Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 0.0e+00 1331.2 667 100.0
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 0.0e+00 1115.5 658 85.1
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 0.0e+00 1105.9 635 86.5
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 0.0e+00 1099.7 664 83.1
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 0.0e+00 1096.6 668 82.3
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 0.0e+00 1080.1 672 81.5
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 3.7e-288 994.6 528 95.6
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 1.4e-271 939.5 678 69.0
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 1.6e-262 909.4 663 68.8
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 6.8e-258 894.0 669 68.0
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 2.7e-254 882.1 674 64.2
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 2.3e-253 879.0 666 67.4
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 6.8e-250 867.5 609 70.4
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 1.1e-247 860.1 654 66.1
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 3.0e-245 852.0 668 65.0
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 3.9e-245 851.7 668 65.0
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 5.1e-245 851.3 651 64.5
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 2.5e-244 849.0 648 64.5
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 3.3e-244 848.6 675 63.3
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 3.3e-244 848.6 667 64.6
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 1.6e-243 846.3 647 64.6
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 3.6e-243 845.1 675 62.5
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 4.0e-242 841.6 632 66.6
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 2.6e-241 839.0 671 63.9
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 1.9e-239 832.8 684 63.5
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 2.4e-239 832.4 679 63.5
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 4.6e-238 828.2 683 60.9
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 3.0e-237 825.5 641 64.3
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 3.0e-237 825.5 636 65.9
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 8.7e-237 823.9 675 62.8
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 2.5e-236 822.4 657 62.6
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 3.6e-235 818.5 665 62.4
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 1.1e-234 817.0 667 60.3
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 1.8e-234 816.2 649 62.6
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 6.9e-234 814.3 662 63.3
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 7.6e-233 810.8 662 63.1
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 9.9e-233 810.4 671 62.1
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 1.3e-232 810.1 667 62.5
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.4e-232 807.4 698 58.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 3.2e-231 805.4 640 61.4
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 1.6e-230 803.1 668 61.7
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 1.6e-230 803.1 671 61.7
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 1.0e-229 800.4 663 62.0
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 1.0e-229 800.4 645 64.2
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 1.8e-229 799.7 667 62.4
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 3.3e-228 795.4 647 62.1
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 2.1e-227 792.7 671 62.1
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 2.4e-226 789.3 644 61.6
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 5.3e-226 788.1 748 54.0
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 5.3e-226 788.1 672 61.0
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 9.0e-226 787.3 666 61.1
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 7.6e-225 784.3 657 60.9
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 3.9e-221 771.9 648 60.8
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 7.4e-220 767.7 671 59.6
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 9.6e-220 767.3 693 59.2
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 1.4e-218 763.5 700 57.7
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 9.0e-218 760.8 646 60.1
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 1.2e-217 760.4 667 59.2
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 1.3e-216 756.9 647 60.3
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 1.7e-216 756.5 656 58.7
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 7.1e-215 751.1 709 57.4
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 4.6e-214 748.4 654 59.2
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 1.3e-213 746.9 659 58.1
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.8e-213 746.5 650 58.9
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 3.3e-212 742.3 678 56.2
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 3.3e-212 742.3 668 57.5
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 3.8e-208 728.8 670 56.1
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 1.1e-207 727.2 501 72.9
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 7.2e-207 724.5 676 54.9
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 7.9e-206 721.1 664 55.9
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.8e-205 719.9 666 56.2
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 5.7e-204 714.9 643 58.5
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 1.8e-202 709.9 668 54.9
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 3.1e-202 709.1 667 54.6
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 1.3e-200 703.7 667 54.6
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 6.5e-200 701.4 660 55.9
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.4e-199 700.3 670 54.5
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 1.9e-199 699.9 668 54.5
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 2.5e-199 699.5 674 54.3
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 3.2e-199 699.1 668 54.5
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 5.5e-199 698.4 670 54.3
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 4.7e-198 695.3 668 55.5
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 2.1e-190 669.8 693 54.4
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 3.0e-189 666.0 638 54.4
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 1.1e-188 664.1 652 54.3
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 4.1e-186 655.6 530 63.6
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 1.0e-184 651.0 489 67.7
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 4.4e-180 635.6 666 53.3
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 2.2e-179 633.3 644 52.5
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 4.1e-170 602.4 644 51.1
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 2.6e-164 583.2 538 58.7
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 3.2e-162 576.2 655 47.5
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 7.0e-162 575.1 640 50.0
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 1.7e-147 527.3 536 55.6
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 4.4e-140 502.7 638 45.5
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 5.3e-125 452.6 395 59.2
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 1.5e-116 424.5 645 38.4
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 1.4e-109 401.4 630 38.4
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 4.6e-97 359.8 395 51.4
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 1.7e-86 324.7 236 67.8
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 3.7e-78 297.0 456 40.4
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 8.8e-72 275.8 532 36.1
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 8.0e-65 252.7 470 38.7
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 3.5e-52 210.7 230 44.8
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.3e-50 203.8 174 52.9
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.3e-46 192.2 146 61.6
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.3e-35 155.6 401 31.4
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 4.3e-34 150.6 98 75.5
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 4.3e-34 150.6 228 36.8
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 8.3e-30 136.3 87 77.0
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 2.4e-29 134.8 92 65.2
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 2.4e-21 108.2 113 49.6
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 3.2e-21 107.8 157 40.8
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 5.1e-19 100.5 92 59.8
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 1.4e-16 92.4 76 63.2
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 1.0e-11 76.3 74 52.7
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 1.7e-11 75.5 64 54.7
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 6.6e-11 73.6 73 50.7
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 1.9e-10 72.0 75 50.7


User provided reference genes

Program Settings