Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011805g0030 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.2e-127 459.1 265 100.0
Nitab4.5_0001925g0260 Nicotiana tabacum HOM05D004023 ORTHO05D004681 2.7e-117 425.6 254 83.5
Sopen12g034560 Solanum pennellii HOM05D004023 ORTHO05D004681 2.1e-109 399.4 254 78.7
Solyc12g099940.2 Solanum lycopersicum HOM05D004023 ORTHO05D004681 6.1e-109 397.9 254 78.0
CAN.G484.8 Capsicum annuum HOM05D004023 ORTHO05D004681 5.2e-108 394.8 254 77.2
PGSC0003DMG400004653 Solanum tuberosum HOM05D004023 ORTHO05D004681 3.3e-107 392.1 254 76.8
MSTRG.18474 Avicennia marina HOM05D004023 ORTHO05D004681 1.5e-91 340.1 254 66.5
DCAR_006328 Daucus carota HOM05D004023 ORTHO05D004681 9.2e-89 330.9 250 65.6
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 4.5e-88 328.6 251 64.9
GSVIVG01037415001 Vitis vinifera HOM05D004023 ORTHO05D004681 4.5e-88 328.6 256 64.8
Peaxi162Scf00062g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 3.9e-87 325.5 322 57.5
Rhsim13G0202100 Rhododendron simsii HOM05D004023 ORTHO05D004681 3.9e-87 325.5 259 62.9
vmacro04098 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 8.6e-87 324.3 259 61.8
Migut.D00690 Erythranthe guttata HOM05D004023 ORTHO05D004681 4.7e-85 318.5 254 61.4
TAR369G0443 Trochodendron aralioides HOM05D004023 ORTHO05D004681 5.2e-84 315.1 250 62.8
Lj2C939G1 Lonicera japonica HOM05D004023 ORTHO05D004681 6.8e-84 314.7 299 56.2
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 2.0e-83 313.2 251 61.8
AUR62003487 Chenopodium quinoa HOM05D004023 ORTHO05D004681 7.5e-83 311.2 253 61.3
Actinidia24483 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.4e-81 307.0 251 62.2
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 5.4e-81 305.1 248 62.1
PGR119G0815 Punica granatum HOM05D004023 ORTHO05D004681 2.7e-80 302.8 261 59.0
Aqoxy1G00042 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 1.0e-79 300.8 252 59.9
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.3e-79 300.4 251 59.8
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 2.5e-78 296.2 263 58.9
Hma1.2p1_1711F.1_g298750 Hydrangea macrophylla HOM05D004023 ORTHO05D004681 9.5e-78 294.3 245 62.0
PSO384G4677 Papaver somniferum HOM05D004023 ORTHO05D004681 1.2e-77 293.9 252 58.3
PSO339G3635 Papaver somniferum HOM05D004023 ORTHO05D004681 2.0e-75 286.6 253 56.9
SGA_v2.0_scaffold29G12111 Striga asiatica HOM05D004023 ORTHO05D004681 2.2e-74 283.1 324 50.3
EL10Ac6g15385 Beta vulgaris HOM05D004023 ORTHO05D004681 2.1e-72 276.6 321 49.2
Hund12723 Selenicereus undatus HOM05D004023 ORTHO05D004681 1.0e-71 274.2 251 57.4
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 8.1e-69 264.6 251 53.8
Actinidia07003 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.2e-67 260.8 236 56.8
Lj2C946G11 Lonicera japonica HOM05D004023 ORTHO05D004681 2.9e-66 256.1 258 53.5
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 6.0e-64 248.4 247 51.0
Nn7g37124 Nelumbo nucifera HOM05D004023 ORTHO05D004681 2.3e-63 246.5 164 71.3
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 5.6e-62 241.9 251 50.6
SalBow6G6388 Salvia bowleyana HOM05D004023 ORTHO05D004681 1.8e-60 236.9 165 66.1
unitig_0.g313 Utricularia gibba HOM05D004023 ORTHO05D004681 6.4e-58 228.4 157 70.7
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 3.9e-55 219.2 243 49.0
unitig_60.g25636 Utricularia gibba HOM05D004023 ORTHO05D004681 1.9e-54 216.9 283 45.6
CDE05G3056 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 4.2e-49 199.1 235 48.1
Atru.chr7.1700 Acer truncatum HOM05D004023 ORTHO05D004681 2.3e-47 193.4 222 46.4
CSS0000978 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 8.7e-47 191.4 249 45.0
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 1.1e-46 191.0 242 42.1
CiPaw.03G206900 Carya illinoinensis HOM05D004023 ORTHO05D004681 1.5e-46 190.7 227 46.7
AT2G06025 Arabidopsis thaliana HOM05D004023 ORTHO05D004681 1.9e-46 190.3 263 41.4
VMungo1309G2832 Vigna mungo HOM05D004023 ORTHO05D004681 3.3e-46 189.5 244 42.6
AL3G43670 Arabidopsis lyrata HOM05D004023 ORTHO05D004681 1.6e-45 187.2 221 46.2
BcaB06g26883 Brassica carinata HOM05D004023 ORTHO05D004681 2.1e-45 186.8 239 44.4
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 2.1e-45 186.8 229 44.5
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 1.1e-44 184.5 231 42.9
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 1.4e-44 184.1 221 45.7
Phvul.009G227400 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 1.4e-44 184.1 244 41.8
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 1.8e-44 183.7 221 45.7
Glyma.15G177500 Glycine max HOM05D004023 ORTHO05D004681 2.4e-44 183.3 226 44.7
Glyma.09G069500 Glycine max HOM05D004023 ORTHO05D004681 3.1e-44 183.0 235 43.0
C07p09330 Brassica napus HOM05D004023 ORTHO05D004681 4.0e-44 182.6 221 45.2
BolC7t41351H Brassica oleracea HOM05D004023 ORTHO05D004681 4.0e-44 182.6 221 45.2
Psat1g134240 Pisum sativum HOM05D004023 ORTHO05D004681 6.9e-44 181.8 214 45.3
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 9.0e-44 181.4 221 45.2
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 9.0e-44 181.4 221 45.2
Carub.0003s2716 Capsella rubella HOM05D004023 ORTHO05D004681 9.0e-44 181.4 214 47.2
Lj6g0013866 Lotus japonicus HOM05D004023 ORTHO05D004681 2.0e-43 180.3 237 41.4
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 2.6e-43 179.9 231 45.0
Hund08779 Selenicereus undatus HOM05D004023 ORTHO05D004681 3.4e-43 179.5 223 44.4
TPR.G28584 Trifolium pratense HOM05D004023 ORTHO05D004681 9.9e-43 177.9 243 39.9
Ciclev10009135m.g Citrus clementina HOM05D004023 ORTHO05D004681 2.2e-42 176.8 210 45.7
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 3.8e-42 176.0 225 40.9
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 4.9e-42 175.6 226 41.6
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 6.4e-42 175.3 243 42.4
Medtr2g041620 Medicago truncatula HOM05D004023 ORTHO05D004681 6.4e-42 175.3 214 43.5
CSS0007502 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.1e-41 174.5 241 42.7
Aqoxy7G01044 Aquilegia oxysepala HOM05D004023 ORTHO05D004681 1.9e-41 173.7 233 41.6
CSS0019806 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 1.9e-41 173.7 241 42.7
Thhalv10002632m.g Eutrema salsugineum HOM05D004023 ORTHO05D004681 2.4e-41 173.3 229 42.8
TAR383G0448 Trochodendron aralioides HOM05D004023 ORTHO05D004681 2.4e-41 173.3 230 46.1
Thecc.09G077600 Theobroma cacao HOM05D004023 ORTHO05D004681 3.2e-41 172.9 243 41.2
Ca_23416_v3 Cicer arietinum L. HOM05D004023 ORTHO05D004681 4.2e-41 172.6 229 41.5
Eucgr.C00816 Eucalyptus grandis HOM05D004023 ORTHO05D004681 9.3e-41 171.4 233 41.6
MD02G1091000 Malus domestica HOM05D004023 ORTHO05D004681 1.2e-40 171.0 224 42.9
Nitab4.5_0005767g0010 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.2e-40 171.0 225 42.7
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 1.2e-40 171.0 229 44.1
Dinv42390 Davidia involucrata HOM05D004023 ORTHO05D004681 1.6e-40 170.6 230 42.2
PGR142G0045 Punica granatum HOM05D004023 ORTHO05D004681 1.6e-40 170.6 226 43.4
QL11p000695 Quercus lobata HOM05D004023 ORTHO05D004681 2.7e-40 169.9 219 43.8
CSS0006992 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 7.9e-40 168.3 215 44.7
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 7.9e-40 168.3 214 43.5
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 1.0e-39 167.9 214 43.5
Prupe.7G199400 Prunus persica HOM05D004023 ORTHO05D004681 1.0e-39 167.9 216 43.1
Sabra06G0111200 Salix brachista HOM05D004023 ORTHO05D004681 2.3e-39 166.8 229 41.5
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 3.9e-39 166.0 225 40.9
CSS0012197 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.9e-39 166.0 240 41.7
MD15G1217100 Malus domestica HOM05D004023 ORTHO05D004681 5.1e-39 165.6 217 42.9
Nitab4.5_0000024g0190 Nicotiana tabacum HOM05D004023 ORTHO05D004681 1.9e-38 163.7 224 41.1
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 2.5e-38 163.3 226 42.5
PGSC0003DMG400027761 Solanum tuberosum HOM05D004023 ORTHO05D004681 2.5e-38 163.3 227 42.3
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 3.3e-38 162.9 215 45.6
AUR62025247 Chenopodium quinoa HOM05D004023 ORTHO05D004681 3.3e-38 162.9 216 41.7
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 4.3e-38 162.5 229 39.7
Gorai.010G088100 Gossypium raimondii HOM05D004023 ORTHO05D004681 4.3e-38 162.5 229 39.7
CsaV3_1G041000 Cucumis sativus L. HOM05D004023 ORTHO05D004681 5.6e-38 162.2 213 42.7
AUR62028938 Chenopodium quinoa HOM05D004023 ORTHO05D004681 7.4e-38 161.8 216 41.2
Potri.006G142100 Populus trichocarpa HOM05D004023 ORTHO05D004681 9.6e-38 161.4 215 42.8
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.3e-37 161.0 217 40.6
Cc06_g12120 Coffea canephora HOM05D004023 ORTHO05D004681 2.8e-37 159.8 216 44.0
Zm00001eb401920 Zea mays HOM05D004023 ORTHO05D004681 6.2e-37 158.7 235 43.4
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.1e-36 157.9 213 43.2
Os03g0177000 Oryza sativa ssp. japonica HOM05D004023 ORTHO05D004681 1.1e-36 157.9 215 45.1
TWI63G1612 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 1.4e-36 157.5 227 40.5
Zm00001eb401960 Zea mays HOM05D004023 ORTHO05D004681 1.4e-36 157.5 234 43.2
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 1.8e-36 157.1 240 40.0
HPP92_013291 Vanilla planifolia HOM05D004023 ORTHO05D004681 1.8e-36 157.1 243 39.5
HanXRQChr09g0237831 Helianthus annuus HOM05D004023 ORTHO05D004681 5.3e-36 155.6 214 43.5
TWI34G0375 Tripterygium wilfordii HOM05D004023 ORTHO05D004681 5.3e-36 155.6 227 40.1
DCAR_024747 Daucus carota HOM05D004023 ORTHO05D004681 1.2e-35 154.5 235 40.0
DCAR_031922 Daucus carota HOM05D004023 ORTHO05D004681 1.2e-35 154.5 235 40.0
CDE05G0867 Ceratophyllum demersum HOM05D004023 ORTHO05D004681 3.4e-35 152.9 177 48.0
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 4.5e-35 152.5 232 39.2
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 4.9e-34 149.1 227 38.8
EL10Ac8g19063 Beta vulgaris HOM05D004023 ORTHO05D004681 1.1e-33 147.9 132 54.5
Sopen05g021320 Solanum pennellii HOM05D004023 ORTHO05D004681 2.5e-33 146.7 226 40.7
Solyc05g025890.3 Solanum lycopersicum HOM05D004023 ORTHO05D004681 7.1e-33 145.2 199 43.2
Gohir.D06G075200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 9.3e-33 144.8 141 51.8
FAN26G1792 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.3e-31 141.0 211 39.8
FvH4_1g08620 Fragaria vesca HOM05D004023 ORTHO05D004681 1.8e-31 140.6 211 40.3
FAN19G1115 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.8e-31 140.6 211 40.3
FAN23G1893 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.8e-31 140.6 211 39.8
Glyma.13G110200 Glycine max HOM05D004023 ORTHO05D004681 1.8e-31 140.6 216 38.4
MELO3C015518.2 Cucumis melo HOM05D004023 ORTHO05D004681 3.0e-31 139.8 140 49.3
FAN28G2268 Fragaria x ananassa HOM05D004023 ORTHO05D004681 8.7e-31 138.3 211 39.3
RcHm_v2.0_Chr2g0094881 Rosa chinensis HOM05D004023 ORTHO05D004681 8.7e-31 138.3 258 36.4
Sc18g0002510 Simmondsia chinensis HOM05D004023 ORTHO05D004681 1.5e-30 137.5 216 38.4
FAN26G3281 Fragaria x ananassa HOM05D004023 ORTHO05D004681 1.9e-30 137.1 211 39.3
CSS0047726 Camellia sinensis var. sinensis HOM05D004023 ORTHO05D004681 3.3e-30 136.3 257 35.8
ClCG03G015110 Citrullus lanatus HOM05D004023 ORTHO05D004681 8.2e-29 131.7 217 36.4
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 2.4e-28 130.2 225 36.0
Gohir.D13G196385 Gossypium hirsutum HOM05D004023 ORTHO05D004681 3.1e-28 129.8 229 37.1
Gorai.013G224500 Gossypium raimondii HOM05D004023 ORTHO05D004681 3.1e-28 129.8 229 37.1
Gohir.A13G191000 Gossypium hirsutum HOM05D004023 ORTHO05D004681 2.6e-27 126.7 229 36.2
Lj4A912T25 Lonicera japonica HOM05D004023 ORTHO05D004681 1.1e-25 121.3 219 35.2
Manes.03G040200 Manihot esculenta HOM05D004023 ORTHO05D004681 7.1e-25 118.6 220 34.5
Glyma.17G049500 Glycine max HOM05D004023 ORTHO05D004681 1.6e-24 117.5 215 34.9
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 2.1e-24 117.1 196 36.2
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 4.6e-24 115.9 217 34.1
Nn8g38657 Nelumbo nucifera HOM05D004023 ORTHO05D004681 1.0e-23 114.8 169 42.6
Phvul.003G131100 Phaseolus vulgaris HOM05D004023 ORTHO05D004681 1.3e-23 114.4 236 33.1
Zm00001eb408770 Zea mays HOM05D004023 ORTHO05D004681 1.8e-23 114.0 107 54.2
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 3.0e-23 113.2 228 33.3
SMO200G0269 Selaginella moellendorffii HOM05D004023 ORTHO05D004681 3.3e-22 109.8 235 32.3
SalBow5G0641 Salvia bowleyana HOM05D004023 ORTHO05D004681 9.7e-22 108.2 193 35.8
Rhsim03G0227800 Rhododendron simsii HOM05D004023 ORTHO05D004681 1.0e-18 98.2 199 35.2
PSO063G3828 Papaver somniferum HOM05D004023 ORTHO05D004681 8.5e-18 95.1 192 31.2
vmacro06339 Vaccinium macrocarpon HOM05D004023 ORTHO05D004681 2.1e-16 90.5 253 30.0
Cpa.g.sc28.45 Carica papaya HOM05D004023 ORTHO05D004681 2.7e-16 90.1 265 28.7
Sed0008804 Sechium edule HOM05D004023 ORTHO05D004681 3.3e-14 83.2 212 30.2
PSO339G4574 Papaver somniferum HOM05D004023 ORTHO05D004681 3.1e-12 76.6 198 29.3
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 1.2e-11 74.7 194 32.5
PSO384G0928 Papaver somniferum HOM05D004023 ORTHO05D004681 6.5e-10 68.9 196 30.6
PSO384G3720 Papaver somniferum HOM05D004023 ORTHO05D004681 6.5e-10 68.9 196 30.6
Lalb_Chr12g0200121 Lupinus albus HOM05D004023 ORTHO05D004681 2.5e-09 67.0 83 43.4
PSO339G2030 Papaver somniferum HOM05D004023 ORTHO05D004681 2.7e-08 63.5 195 27.2
Glyma.08G144367 Glycine max HOM05D004023 ORTHO05D004681 1.1e-06 58.2 50 56.0
CBR_g23678 Chara braunii HOM05D004023 ORTHO05D004681 3.3e-06 56.6 100 33.0
Oeu013106.1 Olea europaea HOM05D004023 ORTHO05D004681 3.3e-06 56.6 46 52.2


User provided reference genes

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