Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.9e-283 977.2 534 100.0
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 6.7e-256 887.1 550 86.5
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.4e-165 587.0 568 61.4
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.6e-161 572.4 568 58.6
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.8e-161 572.0 568 59.9
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 8.1e-153 544.7 562 57.3
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 2.6e-127 459.9 539 52.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.9e-80 304.3 537 39.9
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 4.0e-75 286.6 544 36.9
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 5.6e-69 266.2 607 34.9
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 3.4e-66 256.9 543 35.9
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 2.2e-65 254.2 543 35.7
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.1e-64 250.0 553 35.6
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 1.5e-21 108.6 171 40.4
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 3.3e-21 107.5 548 25.4
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 4.3e-21 107.1 122 45.9
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.8e-20 103.6 159 37.7
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 9.0e-19 99.4 97 48.5
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.5e-18 98.6 108 43.5
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 4.5e-18 97.1 114 43.0
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 1.7e-17 95.1 167 34.7
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.2e-17 94.7 178 36.0
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 3.8e-17 94.0 179 36.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 3.8e-17 94.0 149 38.3
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 5.0e-17 93.6 538 29.2
Nitab4.5_0000317g0090 Nicotiana tabacum HOM05D020480 ORTHO05D003486 8.5e-17 92.8 598 23.2
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 1.1e-16 92.4 173 33.5
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.1e-16 92.4 162 34.6
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.1e-16 92.4 96 45.8
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.4e-16 92.0 139 35.3
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 1.4e-16 92.0 112 43.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.9e-16 91.7 178 34.8
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.9e-16 91.7 101 45.5
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 2.5e-16 91.3 158 31.0
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.2e-16 90.9 100 43.0
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 3.2e-16 90.9 150 32.0
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 7.2e-16 89.7 175 32.0
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 9.4e-16 89.4 136 34.6
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 1.2e-15 89.0 105 39.0
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.6e-15 88.6 112 42.0
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.6e-15 88.6 82 50.0
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.6e-15 88.6 112 42.9
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 4.6e-15 87.0 107 39.3
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 4.6e-15 87.0 99 42.4
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 4.6e-15 87.0 99 42.4
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 7.9e-15 86.3 103 39.8
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.0e-14 85.9 107 40.2
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.4e-14 85.5 101 37.6
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.8e-14 85.1 173 31.8
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 2.3e-14 84.7 97 42.3
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 2.3e-14 84.7 153 37.9
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 3.0e-14 84.3 108 43.5
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 3.9e-14 84.0 142 35.2
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 5.1e-14 83.6 172 32.0
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 5.1e-14 83.6 167 33.5
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 5.1e-14 83.6 98 39.8
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 5.1e-14 83.6 168 32.7
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 6.7e-14 83.2 111 35.1
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 8.8e-14 82.8 129 35.7
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.1e-13 82.4 138 34.1
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.5e-13 82.0 155 36.1
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 2.0e-13 81.6 163 30.1
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 2.0e-13 81.6 105 40.0
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.5e-13 81.3 103 35.9
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 2.5e-13 81.3 207 29.0
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 3.3e-13 80.9 104 40.4
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 4.3e-13 80.5 154 34.4
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 4.3e-13 80.5 95 42.1
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 4.3e-13 80.5 101 40.6
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 4.3e-13 80.5 437 24.7
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 5.7e-13 80.1 99 40.4
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.7e-13 80.1 112 35.7
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 7.4e-13 79.7 161 33.5
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 9.7e-13 79.3 159 33.3
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 9.7e-13 79.3 109 33.0
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 9.7e-13 79.3 112 35.7
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 1.3e-12 79.0 128 35.9
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.3e-12 79.0 102 39.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.7e-12 78.6 89 41.6
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 2.2e-12 78.2 120 31.7
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.8e-12 77.8 191 30.9
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 2.8e-12 77.8 206 27.7
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 2.8e-12 77.8 162 32.1
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 2.8e-12 77.8 162 32.7
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 3.7e-12 77.4 113 37.2
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 3.7e-12 77.4 111 36.0
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 4.8e-12 77.0 149 36.2
Nitab4.5_0003485g0040 Nicotiana tabacum HOM05D020480 ORTHO05D003486 4.8e-12 77.0 286 27.6
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 4.8e-12 77.0 91 47.3
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 4.8e-12 77.0 89 40.4
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 6.3e-12 76.6 138 31.9
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 6.3e-12 76.6 171 29.2
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.3e-12 76.6 89 44.9
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 6.3e-12 76.6 148 32.4
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 8.2e-12 76.3 91 42.9
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 8.2e-12 76.3 150 30.7
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 8.2e-12 76.3 193 28.5
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 8.2e-12 76.3 124 34.7
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.1e-11 75.9 167 28.7
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 1.1e-11 75.9 130 32.3
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 1.1e-11 75.9 116 31.9
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 1.4e-11 75.5 171 30.4
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.4e-11 75.5 177 31.1
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 2.4e-11 74.7 131 34.4
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 2.4e-11 74.7 131 34.4
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.4e-11 74.7 96 37.5
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 2.4e-11 74.7 88 44.3
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 3.1e-11 74.3 170 28.8
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.1e-11 74.3 154 29.9
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.1e-11 73.9 109 35.8
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 4.1e-11 73.9 79 46.8
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 5.3e-11 73.6 169 29.0
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 5.3e-11 73.6 163 32.5
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.9e-11 73.2 150 34.7
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 9.1e-11 72.8 176 30.7
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 9.1e-11 72.8 99 38.4
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 1.2e-10 72.4 158 31.6
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 1.2e-10 72.4 113 33.6
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.2e-10 72.4 127 35.4
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.0e-10 71.6 468 23.9
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 2.0e-10 71.6 136 33.1
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 2.0e-10 71.6 444 29.5
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.6e-10 71.2 112 33.9
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 2.6e-10 71.2 496 28.0
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 3.4e-10 70.9 132 35.6
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 3.4e-10 70.9 100 36.0
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 3.4e-10 70.9 97 42.3
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 3.4e-10 70.9 101 33.7
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 5.9e-10 70.1 112 37.5
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.0e-09 69.3 132 34.8
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 1.3e-09 68.9 133 36.1
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 1.3e-09 68.9 327 25.1
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.3e-09 68.9 483 24.8
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.7e-09 68.6 133 35.3
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.2e-09 68.2 129 33.3
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.2e-09 68.2 132 34.1
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 2.2e-09 68.2 132 34.1
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 2.2e-09 68.2 103 39.8
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.2e-09 68.2 107 38.3
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 2.2e-09 68.2 111 32.4
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 2.9e-09 67.8 132 34.1
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 3.8e-09 67.4 111 33.3
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.8e-09 67.4 100 39.0
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.0e-09 67.0 133 35.3
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 5.0e-09 67.0 438 23.5
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 5.0e-09 67.0 174 32.2
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 5.0e-09 67.0 110 32.7
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 8.5e-09 66.2 88 39.8
Aqoxy1G03360 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 8.5e-09 66.2 130 32.3
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 8.5e-09 66.2 93 37.6
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.1e-08 65.9 139 30.2
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 1.1e-08 65.9 202 29.7
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.4e-08 65.5 167 27.5
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 1.4e-08 65.5 116 37.1
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 1.4e-08 65.5 143 30.1
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 1.9e-08 65.1 166 30.7
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.9e-08 65.1 187 28.9
Aqoxy3G01606 Aquilegia oxysepala HOM05D020429 ORTHO05D023582 2.5e-08 64.7 170 30.6
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 2.5e-08 64.7 106 34.0
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 3.2e-08 64.3 125 33.6
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 5.5e-08 63.5 213 26.8
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 7.2e-08 63.2 200 25.0
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.4e-08 62.8 103 38.8
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 2.1e-07 61.6 169 27.2
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.7e-07 61.2 189 25.9
Peaxi162Scf00066g00424 Petunia axillaris HOM05D020480 ORTHO05D003486 4.7e-07 60.5 70 38.6
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 7.9e-07 59.7 104 32.7
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 7.9e-07 59.7 80 42.5
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 7.9e-07 59.7 88 35.2
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 1.0e-06 59.3 463 25.1
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.8e-06 58.5 58 44.8
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 1.8e-06 58.5 58 44.8
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 2.3e-06 58.2 470 23.0
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 5.1e-06 57.0 205 27.8


User provided reference genes

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