Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011763g0010 Nicotiana tabacum HOM05D002548 ORTHO05D015821 5.7e-37 157.1 83 100.0
Nitab4.5_0001699g0040 Nicotiana tabacum HOM05D002548 ORTHO05D015821 1.3e-28 129.4 83 83.1
Nitab4.5_0003312g0090 Nicotiana tabacum HOM05D002548 ORTHO05D015821 4.5e-26 120.9 83 78.3
Nitab4.5_0009460g0010 Nicotiana tabacum HOM05D002548 ORTHO05D015821 4.2e-24 114.4 70 84.3
Nitab4.5_0002612g0100 Nicotiana tabacum HOM05D002548 ORTHO05D003031 1.5e-21 105.9 65 86.2
Solyc01g100020.4 Solanum lycopersicum HOM05D002548 ORTHO05D003031 2.8e-20 101.7 65 81.5
Sopen01g043540 Solanum pennellii HOM05D002548 ORTHO05D003031 3.7e-20 101.3 64 82.8
Peaxi162Scf00037g01718 Petunia axillaris HOM05D002548 ORTHO05D003031 1.1e-19 99.8 65 78.5
CAN.G1273.30 Capsicum annuum HOM05D002548 ORTHO05D015821 3.1e-19 98.2 65 80.0
Nitab4.5_0008552g0050 Nicotiana tabacum HOM05D002548 ORTHO05D015821 5.5e-16 87.4 56 78.6
Oeu043326.3 Olea europaea HOM05D002548 ORTHO05D003031 1.4e-11 72.8 67 56.7
MSTRG.27968 Avicennia marina HOM05D002548 ORTHO05D003031 1.0e-09 66.6 67 56.7
ATR0693G075 Amborella trichopoda HOM05D002548 ORTHO05D015821 2.9e-09 65.1 53 62.3
ClCG02G015220 Citrullus lanatus HOM05D002548 ORTHO05D003031 2.9e-09 65.1 72 51.4
CDE05G0041 Ceratophyllum demersum HOM05D002548 ORTHO05D003031 3.8e-09 64.7 58 62.1
Cc02_g34510 Coffea canephora HOM05D002548 ORTHO05D003031 5.0e-09 64.3 68 60.3
CiPaw.07G025000 Carya illinoinensis HOM05D002548 ORTHO05D003031 6.5e-09 63.9 71 53.5
SalBow3G2202 Salvia bowleyana HOM05D002548 ORTHO05D003031 8.5e-09 63.5 68 52.9
CDE11G0396 Ceratophyllum demersum HOM05D002548 ORTHO05D003031 1.1e-08 63.2 58 60.3
Dinv24404 Davidia involucrata HOM05D002548 ORTHO05D003031 3.2e-08 61.6 40 75.0
ECA234G4518 Erigeron canadensis HOM05D002608 ORTHO05D003031 4.2e-08 61.2 65 52.3
MBI18_g25081_MAGBIO Magnolia biondii HOM05D002548 ORTHO05D003031 4.2e-08 61.2 59 54.2
HPP92_001312 Vanilla planifolia HOM05D002548 ORTHO05D003031 4.2e-08 61.2 58 53.4
MELO3C021299.2 Cucumis melo HOM05D002548 ORTHO05D003031 5.5e-08 60.8 56 60.7
QL03p019133 Quercus lobata HOM05D002548 ORTHO05D003031 5.5e-08 60.8 68 51.5
unitig_0.g2321 Utricularia gibba HOM05D002548 ORTHO05D003031 7.2e-08 60.5 69 52.2
Nn3g21569 Nelumbo nucifera HOM05D002548 ORTHO05D003031 9.4e-08 60.1 53 58.5
PGR004G1545 Punica granatum HOM05D002548 ORTHO05D003031 9.4e-08 60.1 53 66.0
Sc19g0005510 Simmondsia chinensis HOM05D002548 ORTHO05D003031 1.2e-07 59.7 62 51.6
CANSAT54G2362 Cannabis sativa HOM05D002548 ORTHO05D003031 2.1e-07 58.9 66 51.5
Ca_01908_v3 Cicer arietinum L. HOM05D002548 ORTHO05D003031 2.1e-07 58.9 80 43.8
ClCG06G004910 Citrullus lanatus HOM05D002548 ORTHO05D003031 2.1e-07 58.9 56 57.1
TAR633G0318 Trochodendron aralioides HOM05D002548 ORTHO05D003031 2.1e-07 58.9 53 56.6
MELO3C004211.2 Cucumis melo HOM05D002548 ORTHO05D003031 2.7e-07 58.5 72 45.8
Phvul.007G198600 Phaseolus vulgaris HOM05D002548 ORTHO05D003031 2.7e-07 58.5 65 49.2
Ciclev10004210m.g Citrus clementina HOM05D002548 ORTHO05D003031 3.6e-07 58.2 40 70.0
CSS0001894 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 4.7e-07 57.8 58 51.7
CSS0029965 Camellia sinensis var. sinensis HOM05D002548 ORTHO05D003031 4.7e-07 57.8 58 51.7
CsaV3_2G006790 Cucumis sativus L. HOM05D002548 ORTHO05D003031 4.7e-07 57.8 73 45.2
SGA_v2.0_scaffold81G26109 Striga asiatica HOM05D002548 ORTHO05D003031 4.7e-07 57.8 67 47.8
Duzib177G0244 Durio zibethinus HOM05D002548 ORTHO05D003031 6.1e-07 57.4 65 44.6
Sed0007898 Sechium edule HOM05D002548 ORTHO05D003031 6.1e-07 57.4 59 52.5
FvH4_6g06940 Fragaria vesca HOM05D002548 ORTHO05D003031 8.0e-07 57.0 65 52.3
Lj9C201T6 Lonicera japonica HOM05D002548 ORTHO05D015821 8.0e-07 57.0 51 58.8
Medtr1g083620 Medicago truncatula HOM05D002548 ORTHO05D003031 8.0e-07 57.0 65 47.7
Sc01g0005280 Simmondsia chinensis HOM05D002548 ORTHO05D003031 8.0e-07 57.0 46 67.4
arahy.Tifrunner.gnm1.ann1.Y1617F Arachis hypogaea HOM05D002548 ORTHO05D003031 1.0e-06 56.6 68 50.0
Haze_01147 Corylus avellana HOM05D002548 ORTHO05D003031 1.0e-06 56.6 57 56.1
FvH4_4g18810 Fragaria vesca HOM05D002548 ORTHO05D003031 1.0e-06 56.6 67 52.2
FAN17G0016 Fragaria x ananassa HOM05D002548 ORTHO05D003031 1.0e-06 56.6 67 52.2
Thecc.05G317000 Theobroma cacao HOM05D002548 ORTHO05D003031 1.4e-06 56.2 66 47.0
DCAR_002487 Daucus carota HOM05D002548 ORTHO05D003031 1.8e-06 55.8 56 60.7
TWI73G1219 Tripterygium wilfordii HOM05D002548 ORTHO05D003031 1.8e-06 55.8 61 50.8
Cfa015437 Carpinus fangiana HOM05D002548 ORTHO05D003031 2.3e-06 55.5 54 59.3
Lj6g0012924 Lotus japonicus HOM05D002548 ORTHO05D003031 2.3e-06 55.5 41 65.9
MD13G1162600 Malus domestica HOM05D002548 ORTHO05D003031 2.3e-06 55.5 55 61.8
MD16G1162400 Malus domestica HOM05D002548 ORTHO05D003031 2.3e-06 55.5 40 67.5
Prupe.1G130000 Prunus persica HOM05D002548 ORTHO05D003031 3.0e-06 55.1 40 65.0
Prupe.6G317900 Prunus persica HOM05D002548 ORTHO05D003031 3.0e-06 55.1 66 51.5
SHI12819 Sapria himalayana HOM05D002548 ORTHO05D003031 3.0e-06 55.1 38 68.4
Hund24880 Selenicereus undatus HOM05D002548 ORTHO05D003031 3.0e-06 55.1 61 50.8
CANSAT78G1895 Cannabis sativa HOM05D002548 ORTHO05D003031 4.0e-06 54.7 64 50.0
Cpa.g.sc50.149 Carica papaya HOM05D002548 ORTHO05D003031 4.0e-06 54.7 58 51.7
Dinv29713 Davidia involucrata HOM05D002548 ORTHO05D003031 4.0e-06 54.7 50 56.0
HanXRQChr10g0293451 Helianthus annuus HOM05D002548 ORTHO05D003031 4.0e-06 54.7 68 45.6
Nn4g25730 Nelumbo nucifera HOM05D002548 ORTHO05D003031 4.0e-06 54.7 53 52.8
RcHm_v2.0_Chr4g0423621 Rosa chinensis HOM05D002548 ORTHO05D003031 4.0e-06 54.7 65 50.8
Sed0006408 Sechium edule HOM05D002548 ORTHO05D003031 4.0e-06 54.7 66 48.5
Cc03_g01430 Coffea canephora HOM05D002548 ORTHO05D003031 5.2e-06 54.3 41 65.9
Dinv44341 Davidia involucrata HOM05D002548 ORTHO05D003031 5.2e-06 54.3 67 49.3
Oeu031987.1 Olea europaea HOM05D002548 ORTHO05D003031 5.2e-06 54.3 77 46.8
Psat6g151640 Pisum sativum HOM05D002548 ORTHO05D003031 5.2e-06 54.3 65 49.2
Thecc.04G290500 Theobroma cacao HOM05D002548 ORTHO05D003031 5.2e-06 54.3 55 56.4
Ciclev10000089m.g Citrus clementina HOM05D002548 ORTHO05D003031 6.8e-06 53.9 41 63.4
COL.COLO4_13805 Corchorus olitorius HOM05D002548 ORTHO05D015821 6.8e-06 53.9 55 56.4
Glyma.15G152100 Glycine max HOM05D002548 ORTHO05D003031 6.8e-06 53.9 52 57.7
DCAR_014258 Daucus carota HOM05D002548 ORTHO05D003031 8.8e-06 53.5 66 42.4
Solyc01g065720.4 Solanum lycopersicum HOM05D002548 ORTHO05D003031 8.8e-06 53.5 54 55.6
GSVIVG01035095001 Vitis vinifera HOM05D002548 ORTHO05D003031 8.8e-06 53.5 53 54.7


User provided reference genes

Program Settings