Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.6e-184 647.1 348 100.0
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 2.2e-146 522.7 345 84.3
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 2.8e-146 522.3 348 82.8
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.8e-145 519.6 348 82.2
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 3.3e-131 472.2 343 75.2
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.0e-129 464.5 425 66.8
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 7.2e-126 454.5 346 71.7
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 2.3e-124 449.5 345 70.1
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 2.2e-122 443.0 345 69.6
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 8.3e-122 441.0 346 70.2
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 7.0e-121 438.0 348 70.4
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 2.0e-120 436.4 347 70.0
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 4.5e-120 435.3 341 71.6
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 2.2e-119 433.0 346 69.4
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 3.8e-119 432.2 345 71.0
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 2.5e-118 429.5 348 73.0
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 8.8e-116 421.0 347 67.4
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 1.5e-115 420.2 345 68.7
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 2.6e-115 419.5 341 67.4
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 3.4e-115 419.1 345 67.0
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 4.4e-115 418.7 348 66.7
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 4.4e-115 418.7 346 67.1
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 9.8e-115 417.5 346 65.6
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 1.7e-114 416.8 346 66.2
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 2.2e-114 416.4 346 65.0
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 1.1e-113 414.1 345 66.4
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 1.4e-113 413.7 345 66.1
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 1.4e-113 413.7 347 65.7
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.8e-113 413.3 345 67.5
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.8e-113 413.3 348 66.7
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 1.2e-112 410.6 376 62.5
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 2.0e-112 409.8 348 64.9
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 2.7e-112 409.5 348 64.7
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 2.7e-112 409.5 341 65.7
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 3.5e-112 409.1 346 65.0
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 5.9e-112 408.3 343 66.5
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 8.6e-111 404.4 341 66.0
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.1e-110 404.1 344 63.7
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 2.5e-110 402.9 346 65.9
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 3.3e-110 402.5 365 65.2
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 4.3e-110 402.1 338 66.6
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 4.3e-110 402.1 344 65.7
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 9.5e-110 401.0 339 65.8
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 9.5e-110 401.0 339 65.5
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 1.6e-109 400.2 339 66.1
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 4.7e-109 398.7 346 64.2
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 8.0e-109 397.9 339 65.2
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 8.0e-109 397.9 339 65.2
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 8.0e-109 397.9 339 65.2
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 1.0e-108 397.5 346 64.7
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 1.0e-108 397.5 346 64.7
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 2.3e-108 396.4 322 69.6
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 3.0e-108 396.0 370 63.0
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 4.0e-108 395.6 324 67.6
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 6.8e-108 394.8 346 66.2
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 1.5e-107 393.7 347 64.6
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 3.4e-107 392.5 347 64.0
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 4.4e-107 392.1 348 65.2
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.7e-106 390.2 355 62.5
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 4.9e-106 388.7 425 55.1
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 8.3e-106 387.9 345 61.7
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 1.4e-105 387.1 345 60.9
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 2.4e-105 386.3 348 63.2
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 2.4e-105 386.3 346 63.0
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 2.4e-105 386.3 347 62.8
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 1.6e-104 383.6 345 62.6
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 2.0e-104 383.3 344 63.1
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 4.6e-104 382.1 364 63.2
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 5.9e-104 381.7 346 61.8
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 7.8e-104 381.3 345 61.2
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.0e-103 380.9 345 61.2
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 1.0e-103 380.9 345 61.2
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 3.9e-103 379.0 345 61.4
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 5.0e-103 378.6 345 60.9
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 1.1e-102 377.5 341 63.0
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.3e-102 375.9 345 60.9
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 3.3e-102 375.9 345 62.0
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 7.3e-102 374.8 346 63.0
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 9.5e-102 374.4 346 59.2
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.8e-101 372.9 345 61.2
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 6.2e-101 371.7 319 64.6
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 8.0e-101 371.3 339 62.8
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 1.0e-100 370.9 339 62.8
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 1.4e-100 370.5 354 61.0
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 6.8e-100 368.2 347 61.1
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 2.6e-99 366.3 345 61.4
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 2.6e-99 366.3 347 60.5
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 5.8e-99 365.2 345 61.2
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 2.2e-98 363.2 339 62.5
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 3.7e-98 362.5 346 59.0
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 6.4e-98 361.7 343 59.2
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 3.9e-95 352.4 321 62.6
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 6.6e-95 351.7 358 60.1
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 4.3e-94 349.0 320 61.2
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.6e-93 347.1 318 62.3
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.6e-91 339.7 347 58.2
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 9.8e-91 337.8 336 61.0
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 1.3e-90 337.4 283 65.0
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.7e-90 337.0 417 50.6
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 2.9e-90 336.3 295 69.2
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.1e-89 334.3 347 57.1
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 5.4e-89 332.0 385 54.8
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 9.2e-89 331.3 246 72.4
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 5.1e-87 325.5 334 59.9
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 4.0e-84 315.8 350 51.1
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 2.0e-83 313.5 306 61.1
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 4.4e-83 312.4 241 71.4
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 5.8e-83 312.0 222 73.9
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 7.6e-83 311.6 259 67.6
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 2.7e-80 303.1 220 72.7
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 6.0e-80 302.0 321 58.9
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.5e-78 297.4 346 50.9
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 3.1e-76 289.7 340 52.1
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 2.1e-72 276.9 227 67.8
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 6.0e-72 275.4 262 59.2
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 7.8e-72 275.0 396 49.7
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 2.1e-69 266.9 229 66.4
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 2.6e-67 260.0 197 71.6
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 9.3e-65 251.5 344 46.8
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 1.7e-63 247.3 338 44.7
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 2.1e-56 223.8 345 40.6
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 5.5e-49 199.1 136 77.9
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 5.5e-49 199.1 196 57.7
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 6.0e-48 195.7 206 53.4
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 5.7e-46 189.1 223 49.8
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 1.3e-45 188.0 258 45.7
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 5.0e-42 176.0 161 62.7
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 2.5e-38 163.7 149 63.1
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 4.1e-36 156.4 129 69.8
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.4e-35 153.3 151 57.6
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 1.0e-34 151.8 105 77.1
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 3.9e-31 139.8 122 69.7
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 5.1e-31 139.4 232 38.4
Solyc07g041890.1 Solanum lycopersicum HOM05D002335 ORTHO05D006282 6.7e-31 139.0 208 45.7
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 2.2e-26 124.0 148 48.6
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.4e-23 114.8 80 75.0
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 2.3e-23 114.0 217 36.4
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 7.7e-19 99.0 99 58.6
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 6.1e-16 89.4 59 79.7
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 6.7e-15 85.9 52 84.6
Oeu011491.2 Olea europaea HOM05D002335 ORTHO05D006282 5.7e-14 82.8 61 67.2
Oeu031390.1 Olea europaea HOM05D002335 ORTHO05D006282 7.5e-14 82.4 50 78.0
CAN.G2458.1 Capsicum annuum HOM05D002335 ORTHO05D006282 1.1e-12 78.6 74 66.2
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 1.8e-12 77.8 53 75.5
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 7.0e-12 75.9 68 57.4
arahy.Tifrunner.gnm1.ann1.HK8DFN Arachis hypogaea HOM05D002335 ORTHO05D006282 2.2e-10 70.9 65 52.3
arahy.Tifrunner.gnm1.ann1.S4WZ34 Arachis hypogaea HOM05D000237 ORTHO05D017465 1.5e-09 68.2 73 47.9
arahy.Tifrunner.gnm1.ann1.WCUD5S Arachis hypogaea HOM05D000237 ORTHO05D017465 1.2e-08 65.1 55 56.4
arahy.Tifrunner.gnm1.ann1.9B3XF4 Arachis hypogaea HOM05D000237 ORTHO05D017465 6.8e-07 59.3 44 56.8
arahy.Tifrunner.gnm1.ann1.Y6L4BT Arachis hypogaea HOM05D000237 ORTHO05D017465 2.0e-06 57.8 84 41.7


User provided reference genes

Program Settings