Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 2.2e-277 958.4 487 100.0
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 4.8e-261 904.0 493 94.5
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 9.5e-209 730.3 454 82.2
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 1.4e-204 716.5 454 81.3
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.2e-203 713.4 490 76.9
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 1.0e-202 710.3 454 80.4
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 1.3e-202 709.9 455 80.7
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 6.7e-146 521.5 456 61.6
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 2.6e-145 519.6 469 61.0
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.7e-144 516.9 474 60.3
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 4.8e-144 515.4 470 60.4
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 6.5e-141 505.0 479 58.7
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 5.5e-140 501.9 476 60.1
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.6e-139 500.4 467 58.2
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.0e-138 497.7 455 59.8
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 3.3e-137 492.7 532 54.7
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 3.3e-137 492.7 461 58.6
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 9.7e-137 491.1 488 57.0
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.1e-135 487.6 457 59.1
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.4e-135 487.3 495 55.4
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 2.4e-135 486.5 455 58.9
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 3.1e-135 486.1 471 60.3
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.6e-134 483.8 456 58.1
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.6e-134 483.8 516 54.3
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 3.5e-134 482.6 499 56.3
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 1.7e-133 480.3 457 58.0
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 2.9e-133 479.6 492 55.7
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 2.9e-133 479.6 512 54.5
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 3.8e-133 479.2 454 57.9
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 6.5e-133 478.4 512 54.5
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 3.2e-132 476.1 541 53.2
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.2e-131 474.2 506 54.0
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 2.7e-131 473.0 462 55.0
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 6.1e-131 471.9 486 55.6
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 6.1e-131 471.9 483 56.1
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 5.2e-130 468.8 483 55.5
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 5.2e-130 468.8 455 57.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.5e-129 467.2 465 55.3
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 7.5e-129 464.9 463 56.2
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 7.5e-129 464.9 483 55.1
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 9.8e-129 464.5 472 53.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.2e-128 463.4 453 56.7
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.4e-127 460.7 456 54.8
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 2.4e-127 459.9 488 54.1
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 4.1e-127 459.1 473 54.3
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 5.4e-127 458.8 456 56.4
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 1.2e-126 457.6 453 57.6
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 2.7e-126 456.4 473 54.1
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 2.7e-126 456.4 498 51.6
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 7.7e-126 454.9 445 56.4
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.9e-125 453.0 491 52.5
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 5.0e-125 452.2 451 56.5
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 8.5e-125 451.4 463 57.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 1.6e-123 447.2 464 53.7
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.8e-123 446.4 466 54.5
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 3.6e-123 446.0 469 53.5
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 3.6e-123 446.0 535 49.0
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.4e-122 444.1 478 53.6
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.8e-122 443.7 466 55.4
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 4.0e-122 442.6 563 48.3
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 5.2e-122 442.2 469 54.8
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 5.2e-122 442.2 463 54.2
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 8.8e-122 441.4 475 53.1
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 1.5e-121 440.7 464 54.7
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 2.6e-121 439.9 454 50.4
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.4e-121 439.5 455 53.4
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 4.4e-121 439.1 466 54.3
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.8e-120 436.4 466 54.1
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.7e-120 436.0 507 50.9
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 1.1e-119 434.5 460 53.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 1.8e-119 433.7 458 52.6
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 2.7e-118 429.9 463 52.5
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.7e-118 429.9 459 53.8
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 7.8e-118 428.3 461 53.1
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.9e-117 426.4 533 48.6
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.9e-117 426.4 459 53.2
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.5e-116 424.1 462 51.7
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 3.3e-116 422.9 462 52.2
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 3.3e-116 422.9 463 54.0
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 4.3e-116 422.5 460 52.2
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 2.1e-115 420.2 454 52.4
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.0e-114 417.9 469 48.8
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.4e-114 417.5 453 52.1
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.8e-111 407.1 461 51.0
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 7.0e-111 405.2 280 67.9
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.2e-110 404.4 295 64.7
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 3.9e-109 399.4 482 46.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 5.2e-106 389.0 271 67.9
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 3.4e-105 386.3 267 68.5
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 8.3e-104 381.7 340 58.2
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 3.2e-103 379.8 351 56.1
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.2e-102 377.9 566 44.7
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 2.7e-102 376.7 330 57.0
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 7.8e-102 375.2 284 63.7
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 6.6e-101 372.1 273 64.8
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 4.3e-100 369.4 273 60.1
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 7.3e-100 368.6 266 62.8
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 1.4e-98 364.4 448 47.5
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 2.2e-96 357.1 328 58.2
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 8.3e-96 355.1 299 57.2
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 2.4e-95 353.6 280 63.2
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 1.7e-93 347.4 372 47.8
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 6.8e-90 335.5 242 66.5
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 8.9e-90 335.1 517 43.3
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.0e-89 334.0 494 42.5
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 1.3e-88 331.3 349 48.1
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.9e-84 317.4 247 60.3
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 8.1e-83 312.0 267 56.9
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 9.0e-82 308.5 297 51.5
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 2.0e-81 307.4 194 72.7
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.6e-81 307.0 269 56.9
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.6e-73 280.4 282 51.1
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.7e-72 277.7 177 72.9
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 8.4e-72 275.4 285 50.2
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 7.9e-70 268.9 188 64.4
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.1e-68 265.0 283 49.8
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.4e-58 230.7 275 47.6
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.8e-57 226.1 233 49.4
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.7e-54 217.2 275 44.7
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 3.3e-52 210.3 286 41.3
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 7.4e-52 209.1 178 56.2
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 1.8e-50 204.5 246 52.8
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 3.1e-50 203.8 139 64.7
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.1e-46 191.0 137 65.0
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 1.4e-42 178.3 102 78.4
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 9.1e-42 175.6 136 60.3
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.2e-41 175.3 253 39.5
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.5e-39 167.5 300 34.7
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 9.4e-39 165.6 292 36.6
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 2.7e-38 164.1 274 43.1
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.6e-36 157.5 291 35.7
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.1e-34 150.6 78 89.7
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 1.2e-33 148.7 271 44.3
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.9e-29 133.7 167 44.9
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 4.4e-28 130.2 253 40.7
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.3e-27 128.6 344 28.2
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 1.8e-26 124.8 119 51.3
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 4.1e-26 123.6 98 57.1
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 3.8e-24 117.1 294 30.6
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.4e-10 72.0 55 60.0
TPR.G37060 Trifolium pratense HOM05D004937 ORTHO05D006414 1.4e-10 72.0 146 38.4
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.8e-10 71.6 161 37.3
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 5.4e-10 70.1 115 47.8
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 1.2e-09 68.9 95 48.4
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 1.6e-09 68.6 67 55.2
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.3e-08 64.7 105 36.2
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.3e-08 64.7 65 47.7
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-06 58.5 37 67.6


User provided reference genes

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