Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 7.3e-184 647.1 336 100.0
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 2.5e-144 515.8 337 84.6
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 1.0e-132 477.2 337 79.8
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 3.8e-116 422.2 343 72.0
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 6.5e-116 421.4 343 72.0
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 8.3e-111 404.4 338 69.2
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 2.3e-105 386.3 353 66.6
Peaxi162Scf00003g03742 Petunia axillaris HOM05D007421 ORTHO05D009203 1.4e-73 280.8 337 57.9
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 4.5e-48 196.1 364 41.5
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.1e-46 191.4 363 42.1
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 1.8e-44 184.1 354 41.2
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 6.7e-44 182.2 348 43.1
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 7.4e-43 178.7 348 42.5
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 4.8e-42 176.0 392 37.0
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 1.5e-35 154.5 361 38.2
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 7.4e-35 152.1 244 44.7
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.6e-34 151.0 279 42.7
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 4.8e-34 149.4 289 37.7
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 1.1e-33 148.3 320 36.2
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 5.3e-33 146.0 362 37.0
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 1.5e-32 144.4 340 36.5
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 3.8e-31 139.8 350 33.4
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 5.0e-31 139.4 262 39.7
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 6.1e-29 132.5 357 34.7
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.1e-27 128.3 270 39.6
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 5.7e-27 125.9 303 35.6
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 7.4e-27 125.6 291 37.8
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 1.7e-26 124.4 358 35.8
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 4.8e-26 122.9 342 33.6
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 8.2e-26 122.1 295 38.0
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 6.9e-25 119.0 289 36.7
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.2e-24 118.2 230 38.7
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 2.6e-24 117.1 233 38.2
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 5.9e-24 115.9 284 35.6
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 2.2e-23 114.0 344 30.5
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 2.2e-23 114.0 294 35.4
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 6.5e-23 112.5 318 34.9
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 1.1e-22 111.7 204 40.7
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 1.9e-22 110.9 335 31.6
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 2.5e-22 110.5 322 33.9
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.2e-22 110.2 281 33.8
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 1.2e-21 108.2 327 32.1
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 2.7e-21 107.1 324 34.6
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 3.6e-21 106.7 332 34.3
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 4.7e-21 106.3 282 33.7
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 1.8e-20 104.4 279 34.4
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 2.3e-20 104.0 340 31.2
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 3.0e-20 103.6 306 31.7
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 3.0e-20 103.6 308 31.8
ECA236G4083 Erigeron canadensis HOM05D007421 ORTHO05D009203 2.6e-19 100.5 345 31.9
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 3.3e-19 100.1 292 35.6
SGA_v2.0_scaffold332G48944 Striga asiatica HOM05D007421 ORTHO05D009203 5.7e-19 99.4 386 31.3
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 9.7e-19 98.6 220 35.5
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 2.2e-18 97.4 200 36.5
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 2.8e-18 97.1 190 39.5
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 8.2e-18 95.5 328 31.4
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 1.0e-15 88.6 291 37.1
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 1.7e-15 87.8 291 37.1
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 1.9e-14 84.3 256 33.6
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 3.2e-14 83.6 280 35.0
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 3.2e-14 83.6 236 36.9
MBI07_g32548_MAGBIO Magnolia biondii HOM05D007421 ORTHO05D009203 3.9e-12 76.6 218 36.7
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 1.5e-11 74.7 219 36.5
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 1.5e-11 74.7 164 37.2
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 7.4e-11 72.4 289 33.9
Migut.B00638 Erythranthe guttata HOM05D007421 ORTHO05D009203 9.7e-11 72.0 255 34.1
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 9.7e-11 72.0 156 39.7
Ah.09g232060 Amaranthus hybridus HOM05D007421 ORTHO05D009203 2.2e-10 70.9 307 29.3
CDE02G3538 Ceratophyllum demersum HOM05D007421 ORTHO05D009203 3.7e-10 70.1 157 36.9
HPP92_013365 Vanilla planifolia HOM05D007421 ORTHO05D009203 6.3e-10 69.3 267 30.0
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 1.4e-09 68.2 359 25.9
ATR0753G155 Amborella trichopoda HOM05D007421 ORTHO05D009203 1.8e-09 67.8 85 41.2
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 3.1e-09 67.0 269 30.5
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 1.6e-08 64.7 303 29.4
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 1.0e-07 62.0 59 55.9
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 5.0e-07 59.7 232 31.0
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 8.5e-07 58.9 120 39.2
CBR_g30215 Chara braunii HOM05D002710 ORTHO05D009203 1.9e-06 57.8 37 59.5
arahy.Tifrunner.gnm1.ann1.LE3KL9 Arachis hypogaea HOM05D007421 ORTHO05D009203 2.5e-06 57.4 141 34.0
arahy.Tifrunner.gnm1.ann1.VL1QZD Arachis hypogaea HOM05D007421 ORTHO05D009203 2.5e-06 57.4 141 34.0
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 5.5e-06 56.2 32 62.5
SMO198G0058 Selaginella moellendorffii HOM05D002710 ORTHO05D002905 5.5e-06 56.2 32 62.5


User provided reference genes

Program Settings