Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 0.0e+00 1713.7 948 100.0
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 0.0e+00 1599.3 949 94.1
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 0.0e+00 1471.4 951 86.8
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 0.0e+00 1468.0 951 87.2
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 0.0e+00 1458.0 951 86.6
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 0.0e+00 1417.1 945 84.4
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 0.0e+00 1241.5 937 76.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 1.1e-306 1056.6 928 66.7
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 3.4e-287 991.9 977 60.0
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 7.6e-287 990.7 946 64.3
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 6.7e-283 977.6 936 60.4
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 8.2e-281 970.7 966 62.1
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.5e-277 959.1 966 60.5
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.5e-277 958.0 963 61.1
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 7.4e-274 947.6 975 58.8
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 2.6e-271 939.1 978 59.9
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 1.4e-269 933.3 942 59.9
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 3.2e-269 932.2 1045 56.3
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 7.2e-269 931.0 942 60.1
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 4.6e-268 928.3 953 58.7
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 7.9e-268 927.5 942 59.2
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 4.3e-266 921.8 978 57.0
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 2.8e-265 919.1 936 60.6
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 8.2e-265 917.5 1004 57.4
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 3.1e-264 915.6 966 58.6
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 3.1e-264 915.6 956 59.7
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 5.3e-264 914.8 968 58.3
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.5e-263 913.3 977 59.9
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 3.4e-263 912.1 939 58.7
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 5.0e-262 908.3 946 57.8
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 3.9e-259 898.7 934 58.5
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.7e-257 893.3 983 56.8
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 7.7e-255 884.4 952 57.6
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 5.0e-254 881.7 951 57.8
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 5.5e-253 878.2 984 55.8
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 7.2e-253 877.9 978 55.0
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 2.7e-252 875.9 1030 55.5
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 1.4e-251 873.6 978 56.0
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 1.8e-251 873.2 970 55.9
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 5.2e-251 871.7 955 55.8
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 8.2e-249 864.4 973 56.5
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 1.8e-248 863.2 943 57.3
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 2.4e-248 862.8 978 57.1
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 7.7e-247 857.8 981 56.6
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.9e-245 853.2 865 59.1
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 3.2e-245 852.4 987 54.4
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 4.2e-245 852.0 898 60.1
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.2e-244 850.5 985 55.5
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 2.7e-244 849.4 942 55.3
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 4.0e-243 845.5 960 54.0
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 5.2e-243 845.1 855 59.6
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 1.5e-242 843.6 975 56.0
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 1.3e-241 840.5 947 56.2
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 6.3e-241 838.2 956 54.6
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 9.1e-240 834.3 983 54.8
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 1.6e-239 833.6 942 55.4
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 3.5e-239 832.4 956 54.2
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 1.6e-236 823.5 970 53.6
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 2.1e-236 823.2 988 53.2
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 2.7e-236 822.8 948 54.4
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 1.0e-235 820.8 614 77.7
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 1.4e-235 820.5 965 53.9
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 2.3e-235 819.7 949 54.2
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 4.4e-234 815.5 939 54.6
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 9.8e-234 814.3 966 53.6
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 1.8e-232 810.1 921 53.4
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 5.9e-231 805.1 925 55.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 2.9e-230 802.7 947 53.9
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 5.6e-229 798.5 953 52.7
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 1.2e-228 797.3 966 52.7
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 8.0e-228 794.7 963 51.2
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.8e-227 793.5 965 52.1
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 2.3e-227 793.1 955 53.9
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 2.3e-227 793.1 961 50.5
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.4e-226 789.3 925 54.8
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 9.8e-226 787.7 996 51.6
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 3.7e-225 785.8 937 53.9
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 6.4e-225 785.0 1003 50.6
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.1e-224 782.3 971 50.9
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 5.4e-224 781.9 926 54.3
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 9.2e-224 781.2 966 51.4
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 3.5e-223 779.2 937 52.9
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.3e-222 777.3 954 51.9
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 1.7e-222 776.9 941 52.4
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 2.5e-221 773.1 953 49.9
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 2.1e-220 770.0 930 53.1
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 2.1e-220 770.0 965 51.7
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 3.1e-219 766.1 938 52.3
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 6.8e-219 765.0 953 51.0
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.5e-213 746.5 946 50.4
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 9.5e-213 744.6 890 51.3
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 1.5e-210 737.3 970 50.4
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.5e-202 710.7 972 49.5
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 2.8e-180 636.7 955 45.3
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 8.4e-177 625.2 703 57.9
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 3.2e-176 623.2 964 43.9
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 1.3e-172 611.3 960 44.4
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.6e-172 610.9 834 47.6
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 4.6e-167 592.8 931 44.1
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 7.7e-154 548.9 443 64.1
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 3.8e-145 520.0 530 62.3
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 8.2e-140 502.3 394 66.8
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.6e-138 497.3 652 54.3
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 1.2e-125 455.3 596 50.3
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 7.2e-120 436.0 896 40.3
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 9.5e-104 382.5 617 44.9
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.2e-98 365.5 500 52.2
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.3e-81 308.9 267 62.9
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 4.8e-71 273.9 311 54.3
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.8e-70 271.9 328 54.9
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.4e-67 262.3 324 53.4
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.9e-66 256.5 412 49.5
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.5e-64 251.5 332 54.8
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 1.5e-61 242.3 265 49.8
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.6e-61 241.5 271 48.7
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 8.4e-60 236.5 986 28.2
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.7e-55 221.1 192 62.5
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 1.5e-53 215.7 233 57.1
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 3.9e-49 201.1 360 43.1
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 4.3e-48 197.6 1122 25.8
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 6.1e-34 150.6 352 40.6
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 2.8e-31 141.7 758 25.9
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.5e-29 136.0 364 38.5
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 4.5e-29 134.4 132 53.8
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 6.5e-28 130.6 696 25.7
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-27 129.8 84 79.8
CAN.G1021.25 Capsicum annuum HOM05D004844 ORTHO05D006036 1.1e-27 129.8 206 44.2
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-27 128.6 82 80.5
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.5e-27 128.6 95 71.6
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 5.5e-27 127.5 146 52.7
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.1e-26 125.6 132 54.5
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 7.9e-26 123.6 117 55.6
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 3.0e-25 121.7 111 58.6
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 2.6e-24 118.6 221 42.5
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 4.1e-22 111.3 92 65.2
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 3.5e-21 108.2 92 64.1
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.6e-18 99.4 116 51.7
Rhsim10G0117900 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.1e-14 86.7 83 62.7
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 2.7e-13 82.0 72 70.8
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 3.8e-12 78.2 51 80.4
Rhsim04G0143200 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.8e-12 78.2 67 65.7
Actinidia31976 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.2e-10 73.2 46 80.4
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 2.1e-10 72.4 51 78.4
Rhsim04G0142900 Rhododendron simsii HOM05D004844 ORTHO05D006036 3.6e-10 71.6 56 67.9
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 4.0e-09 68.2 58 65.5
TAR629G1217 Trochodendron aralioides HOM05D004844 ORTHO05D006036 5.2e-09 67.8 96 47.9
ATR0735G001 Amborella trichopoda HOM05D004844 ORTHO05D006036 3.7e-07 61.6 46 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4285 Anthoceros agrestis HOM05D004844 ORTHO05D074214 1.4e-06 59.7 89 47.2


User provided reference genes

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