Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 9.5e-261 902.9 430 100.0
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.8e-220 768.5 427 86.2
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.4e-218 761.5 436 85.3
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.0e-214 748.4 431 83.5
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 6.7e-214 747.3 431 83.3
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 7.4e-213 743.8 431 83.1
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.1e-208 729.9 433 80.6
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.2e-208 728.4 432 81.2
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 9.0e-203 710.3 426 78.4
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 1.1e-197 693.3 439 74.9
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.7e-197 691.0 429 75.5
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 5.7e-197 691.0 434 77.6
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.7e-196 688.3 426 76.8
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 4.8e-196 688.0 429 76.5
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 8.2e-196 687.2 439 74.0
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 2.0e-194 682.6 435 74.5
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 1.3e-193 679.9 434 74.0
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 1.3e-193 679.9 430 74.9
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.7e-193 679.5 439 73.8
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 2.2e-193 679.1 441 73.7
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 8.5e-193 677.2 433 75.1
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 1.1e-192 676.8 427 77.0
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 1.6e-191 672.9 424 75.0
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 1.6e-191 672.9 424 75.7
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.1e-191 672.5 433 73.9
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 1.8e-190 669.5 433 75.8
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 3.0e-190 668.7 436 75.5
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 6.7e-190 667.5 433 74.6
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 2.0e-189 666.0 520 64.8
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 5.7e-189 664.5 443 72.0
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 1.3e-188 663.3 434 73.0
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 2.8e-188 662.1 420 74.0
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 6.3e-188 661.0 439 72.4
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.1e-187 660.2 434 71.7
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 1.4e-187 659.8 440 72.3
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.4e-187 659.8 445 72.8
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 1.8e-187 659.4 437 73.7
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 1.8e-187 659.4 445 71.5
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 1.8e-187 659.4 437 73.5
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.9e-187 657.5 432 72.9
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 6.9e-187 657.5 439 72.7
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 9.1e-187 657.1 440 71.6
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 1.2e-186 656.8 439 71.5
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 1.5e-186 656.4 442 71.7
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 2.0e-186 656.0 443 72.2
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.5e-186 654.8 440 73.2
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 7.7e-186 654.1 436 72.0
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 1.0e-185 653.7 436 72.2
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 1.7e-185 652.9 444 70.9
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 1.7e-185 652.9 438 72.6
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.5e-185 651.0 446 70.6
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 6.5e-185 651.0 440 72.5
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 1.4e-184 649.8 436 72.0
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.5e-184 649.0 434 72.6
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 3.2e-184 648.7 434 71.4
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 4.2e-184 648.3 430 73.3
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 9.4e-184 647.1 434 71.7
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 2.1e-183 646.0 431 72.9
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 3.6e-183 645.2 400 76.0
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 3.6e-183 645.2 434 71.7
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 6.1e-183 644.4 442 71.3
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 7.9e-183 644.0 434 72.4
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 1.4e-182 643.3 432 72.7
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 1.8e-182 642.9 432 72.0
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.8e-182 642.9 434 70.7
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 2.3e-182 642.5 447 71.4
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 2.3e-182 642.5 440 72.5
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 5.1e-182 641.3 434 71.9
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 5.1e-182 641.3 434 71.2
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 6.7e-182 641.0 440 71.6
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 6.7e-182 641.0 435 72.6
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 2.0e-181 639.4 447 71.1
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.6e-181 639.0 434 71.9
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 2.6e-181 639.0 435 71.5
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.6e-181 639.0 443 70.7
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 2.6e-181 639.0 471 66.7
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 3.3e-181 638.6 433 71.6
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 3.3e-181 638.6 431 72.4
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 5.7e-181 637.9 434 71.0
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 7.4e-181 637.5 434 71.7
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 7.4e-181 637.5 434 71.2
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 7.4e-181 637.5 451 70.5
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 9.7e-181 637.1 429 72.0
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 1.3e-180 636.7 449 69.5
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.7e-180 636.3 451 70.1
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.2e-180 636.0 390 75.9
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 2.8e-180 635.6 438 71.0
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 2.8e-180 635.6 443 71.1
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 6.3e-180 634.4 438 71.5
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 8.2e-180 634.0 434 71.9
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.4e-179 633.3 435 71.7
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 2.4e-179 632.5 435 71.7
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 9.1e-179 630.6 451 69.4
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 1.2e-178 630.2 452 69.0
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.5e-178 629.8 435 70.6
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 2.6e-178 629.0 452 69.7
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.6e-178 629.0 452 69.0
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 4.5e-178 628.2 435 71.5
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.9e-178 627.9 451 69.6
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 5.9e-178 627.9 437 71.9
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 7.7e-178 627.5 414 72.7
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 1.3e-177 626.7 322 87.6
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 1.3e-177 626.7 322 87.6
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 1.3e-177 626.7 431 72.2
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 2.2e-177 625.9 403 75.2
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 5.0e-177 624.8 435 71.5
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 1.1e-176 623.6 430 68.4
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 1.1e-176 623.6 443 69.8
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.5e-176 622.5 425 72.7
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.0e-174 617.1 322 87.0
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 3.0e-174 615.5 430 68.4
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 5.2e-174 614.8 432 68.8
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 6.7e-174 614.4 382 76.2
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 1.5e-173 613.2 430 69.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.7e-172 609.8 430 68.8
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 5.3e-171 604.7 322 85.1
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 5.5e-168 594.7 440 66.8
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 2.1e-167 592.8 452 65.3
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 8.3e-164 580.9 323 83.6
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 1.6e-162 576.6 439 66.5
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 6.3e-156 554.7 288 85.8
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 2.4e-155 552.7 288 85.1
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 4.1e-155 552.0 415 66.3
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 5.4e-155 551.6 288 85.4
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 2.3e-153 546.2 322 75.5
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.5e-144 516.9 285 78.9
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 1.2e-143 513.8 265 87.5
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 2.8e-143 512.7 339 74.6
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.3e-136 489.2 321 67.0
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.4e-133 479.2 391 63.7
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 5.6e-120 435.3 285 67.7
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 1.0e-113 414.5 321 55.8
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 1.7e-113 413.7 304 66.4
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 8.1e-111 404.8 304 68.4
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 2.4e-102 376.7 316 62.0
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.6e-98 364.0 318 49.7
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 2.8e-95 353.2 320 52.2
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 9.3e-83 311.6 267 61.4
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.8e-81 307.4 320 46.2
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 7.2e-67 258.8 136 84.6
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.0e-65 253.4 268 51.9
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.5e-56 224.6 118 86.4
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 4.8e-55 219.5 109 87.2
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.2e-53 214.9 127 78.0
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 8.0e-50 202.2 136 69.1
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 2.0e-48 197.6 127 73.2
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 1.0e-33 148.7 85 80.0
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.0e-33 147.1 85 78.8
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 8.6e-28 129.0 81 69.1
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 1.5e-27 128.3 101 62.4
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 3.2e-14 84.0 52 73.1
Actinidia21694 Actinidia chinensis HOM05D014184 ORTHO05D015797 9.2e-06 55.8 42 71.4
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 9.2e-06 55.8 66 42.4


User provided reference genes

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