Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-228 796.2 408 100.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 3.8e-195 684.9 517 72.1
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.0e-192 676.8 517 71.4
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 3.4e-191 671.8 516 71.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 5.6e-186 654.4 517 68.3
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 5.6e-186 654.4 517 68.5
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-185 652.1 517 68.3
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 2.0e-183 646.0 517 68.1
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.4e-183 644.8 517 68.3
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 7.5e-183 644.0 517 67.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 6.4e-182 641.0 517 67.9
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 2.4e-181 639.0 517 66.9
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 3.2e-181 638.6 495 71.3
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 4.1e-181 638.3 517 66.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 4.1e-181 638.3 517 67.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 7.0e-181 637.5 517 67.1
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 2.1e-180 636.0 517 66.2
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 4.6e-180 634.8 517 66.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 6.0e-180 634.4 517 66.0
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 7.8e-180 634.0 517 66.0
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.7e-179 632.9 517 66.9
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 2.3e-179 632.5 517 66.0
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 3.9e-179 631.7 519 65.7
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 5.1e-179 631.3 517 66.5
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 6.6e-179 630.9 517 66.7
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 6.6e-179 630.9 517 66.5
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 8.6e-179 630.6 517 66.5
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.1e-178 630.2 517 66.2
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.5e-178 629.0 517 65.6
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 3.3e-178 628.6 517 65.6
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 3.3e-178 628.6 517 66.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.3e-178 628.6 517 66.2
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 4.3e-178 628.2 517 66.0
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 5.6e-178 627.9 517 66.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 7.3e-178 627.5 517 66.2
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 9.5e-178 627.1 512 65.6
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 2.8e-177 625.5 517 66.2
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 3.6e-177 625.2 518 65.6
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 3.6e-177 625.2 517 66.3
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.1e-176 623.6 517 65.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 1.8e-176 622.9 517 64.4
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 1.8e-176 622.9 517 65.2
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.8e-176 622.9 517 66.2
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 5.2e-176 621.3 517 65.4
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 5.2e-176 621.3 517 65.6
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 6.8e-176 620.9 517 65.2
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 8.9e-176 620.5 517 64.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.2e-175 620.2 517 65.4
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 1.5e-175 619.8 517 65.8
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 2.0e-175 619.4 517 65.6
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 7.5e-175 617.5 517 65.6
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 7.5e-175 617.5 517 65.6
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.2e-174 615.9 517 64.0
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.9e-174 615.5 517 64.2
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 3.7e-174 615.1 517 64.8
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 8.3e-174 614.0 517 63.6
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 8.3e-174 614.0 517 64.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.4e-173 612.5 517 65.6
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 6.0e-172 607.8 517 65.2
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.8e-172 607.4 465 72.9
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 8.6e-171 604.0 517 63.8
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 3.6e-169 598.6 517 63.1
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 6.8e-168 594.3 517 62.1
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 2.0e-167 592.8 517 61.9
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.4e-167 591.7 495 65.7
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.3e-166 590.1 517 62.1
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-166 589.7 517 62.5
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 2.2e-166 589.3 517 61.3
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 3.8e-166 588.6 514 61.3
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 6.4e-166 587.8 517 63.1
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.9e-165 586.3 517 60.9
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 3.2e-165 585.5 517 63.1
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.7e-164 582.4 518 63.5
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.3e-163 580.1 495 64.4
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-163 579.7 519 62.8
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-163 579.3 517 63.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.9e-162 576.2 517 60.7
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.2e-161 573.5 483 64.4
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 1.1e-160 570.5 521 59.9
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 1.8e-160 569.7 521 59.9
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 1.8e-160 569.7 521 60.7
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.8e-160 569.7 522 60.5
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 2.4e-160 569.3 520 60.8
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 4.0e-160 568.5 521 60.8
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 4.0e-160 568.5 521 60.8
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 4.0e-160 568.5 521 60.8
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 4.0e-160 568.5 521 60.8
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 5.3e-160 568.2 496 62.1
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 6.9e-160 567.8 521 60.8
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 6.9e-160 567.8 521 60.8
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 5.8e-159 564.7 482 65.4
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 5.8e-159 564.7 518 60.4
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 9.9e-159 563.9 521 59.7
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 9.9e-159 563.9 521 59.7
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 9.9e-159 563.9 521 59.7
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 2.9e-158 562.4 521 59.7
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 4.9e-158 561.6 522 59.4
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 6.4e-158 561.2 519 59.5
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.1e-157 560.5 503 60.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 3.2e-157 558.9 497 62.4
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 5.4e-157 558.1 521 59.3
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.2e-156 557.0 517 58.4
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.2e-153 544.7 517 58.4
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 6.2e-153 544.7 518 58.5
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 6.2e-153 544.7 517 58.0
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.1e-152 543.9 518 58.3
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 4.0e-152 542.0 517 58.2
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.9e-152 541.2 517 58.4
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 7.6e-143 511.1 461 63.3
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.8e-142 508.8 473 59.4
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.4e-136 489.6 454 60.8
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.9e-134 481.9 471 59.4
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 8.2e-129 464.5 535 52.5
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.9e-126 456.1 306 80.4
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 5.1e-115 418.7 448 54.2
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 4.4e-114 415.6 523 45.1
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.7e-110 403.7 481 49.5
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 8.8e-107 391.3 404 57.2
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.3e-105 387.5 397 59.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 5.7e-98 362.1 530 41.3
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.3e-96 355.5 263 73.4
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.2e-95 354.4 268 71.6
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.4e-93 344.7 262 73.3
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.4e-91 340.9 518 40.2
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 3.8e-86 322.8 520 38.5
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.9e-85 320.5 519 38.5
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.8e-75 285.4 314 57.0
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 4.7e-68 262.7 138 90.6
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.7e-65 254.2 499 33.3
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.4e-65 252.3 254 54.3
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.1e-62 242.7 504 33.5
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 5.6e-61 239.2 407 38.6
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.5e-61 238.4 508 32.9
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.1e-56 223.0 502 32.5
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.8e-52 210.3 276 44.9
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.3e-48 195.3 162 67.3
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.9e-25 119.8 86 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 8.2e-20 102.4 85 62.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.4e-19 101.7 74 74.3
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 1.4e-16 91.7 56 76.8
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-10 72.0 38 89.5


User provided reference genes

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