Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 3.1e-167 591.7 284 100.0
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 3.1e-151 538.5 283 91.2
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 2.5e-140 502.3 281 85.4
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 1.4e-138 496.5 284 84.5
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 2.0e-134 482.6 268 86.2
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 2.2e-120 436.0 282 72.0
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 4.2e-116 421.8 276 71.0
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 3.6e-115 418.7 273 70.7
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 6.1e-115 417.9 276 69.9
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 8.0e-115 417.5 280 68.6
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 3.4e-113 412.1 273 70.3
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 6.3e-112 407.9 227 86.8
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 2.0e-110 402.9 273 69.6
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 2.9e-109 399.1 271 68.6
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 3.8e-109 398.7 271 67.5
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 3.6e-107 392.1 273 65.9
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 3.0e-106 389.0 275 66.9
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 5.2e-106 388.3 271 63.8
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 8.8e-106 387.5 271 66.1
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 2.6e-105 386.0 293 63.1
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 3.4e-105 385.6 273 66.3
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 4.4e-105 385.2 271 64.9
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 9.8e-105 384.0 271 66.1
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 1.3e-104 383.6 271 64.6
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 2.2e-104 382.9 271 64.9
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 2.8e-104 382.5 271 63.8
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 1.8e-103 379.8 271 65.3
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 1.8e-103 379.8 271 64.9
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.1e-103 378.6 271 64.6
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 9.1e-103 377.5 273 63.7
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 3.5e-102 375.6 271 63.5
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 4.5e-102 375.2 270 64.8
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 4.5e-102 375.2 271 60.9
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 7.7e-102 374.4 272 65.1
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.3e-101 373.6 271 63.8
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 1.7e-101 373.2 270 64.1
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 3.8e-101 372.1 271 65.3
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.9e-100 369.8 271 63.8
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 3.3e-100 369.0 271 63.8
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.2e-99 367.1 272 62.1
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 1.6e-99 366.7 267 61.8
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 4.7e-99 365.2 273 61.5
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.0e-98 364.0 269 62.1
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.3e-96 357.1 274 61.3
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.9e-96 355.9 269 59.9
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 3.7e-96 355.5 269 59.9
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 3.7e-96 355.5 271 60.1
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 1.8e-95 353.2 281 58.4
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 1.8e-95 353.2 281 58.4
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 1.8e-95 353.2 281 58.4
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 3.2e-95 352.4 269 59.5
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 5.4e-95 351.7 272 62.1
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 1.2e-94 350.5 281 60.5
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.6e-94 350.1 284 59.9
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 1.3e-93 347.1 271 59.0
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 2.1e-91 339.7 273 57.9
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 8.9e-90 334.3 221 70.1
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 2.0e-89 333.2 237 65.8
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 4.9e-88 328.6 271 56.8
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 6.4e-88 328.2 277 56.0
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 1.4e-87 327.0 302 52.3
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 1.9e-87 326.6 282 55.0
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 7.8e-86 321.2 276 55.1
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.0e-85 319.3 271 55.7
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 3.9e-85 318.9 224 65.6
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.5e-84 316.2 271 56.5
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.4e-82 310.5 274 54.4
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 2.3e-82 309.7 229 61.6
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 1.7e-80 303.5 313 48.9
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 2.4e-79 299.7 274 51.8
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.0e-77 294.3 286 50.7
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.3e-77 293.1 269 50.6
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 1.2e-75 287.3 236 54.2
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 1.6e-75 287.0 269 49.8
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 9.9e-73 277.7 182 72.0
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 1.7e-69 266.9 188 65.4
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 8.6e-69 264.6 273 48.0
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 2.0e-65 253.4 281 45.2
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 3.4e-65 252.7 330 42.4
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 2.9e-64 249.6 168 67.9
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 9.3e-63 244.6 181 60.8
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 4.6e-62 242.3 174 63.8
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 4.6e-62 242.3 164 68.3
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 1.0e-61 241.1 279 43.4
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 2.2e-56 223.4 186 57.0
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 5.4e-55 218.8 273 42.9
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.9e-52 210.3 252 44.0
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 1.3e-48 197.6 270 39.3
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 1.1e-47 194.5 286 36.4
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 4.3e-44 182.6 134 61.2
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 6.2e-43 178.7 135 60.0
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 4.9e-40 169.1 316 34.2
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 1.4e-39 167.5 85 92.9
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 3.2e-39 166.4 149 56.4
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 5.5e-39 165.6 130 60.0
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 8.2e-35 151.8 110 60.0
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 6.9e-26 122.1 143 46.9
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 2.6e-20 103.6 168 35.1
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 3.3e-20 103.2 129 40.3
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.5e-12 77.8 84 45.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.7e-11 74.3 228 26.3
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 4.8e-11 72.8 212 27.8
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 6.3e-11 72.4 255 27.5
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 8.2e-11 72.0 248 27.4
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.4e-10 71.2 243 27.6
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 1.4e-10 71.2 210 28.1
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.8e-10 70.9 221 26.7
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.8e-10 70.9 222 28.4
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.4e-10 70.5 271 25.8
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.1e-10 70.1 228 25.9
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 5.3e-10 69.3 247 26.7
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 5.3e-10 69.3 213 28.6
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 2.0e-09 67.4 218 27.1
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 2.6e-09 67.0 247 26.3
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 2.6e-09 67.0 223 26.9
ClCG05G021770 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.5e-09 66.6 39 71.8
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.5e-09 66.6 202 27.2
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 3.5e-09 66.6 181 29.8
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 4.5e-09 66.2 221 27.1
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 7.7e-09 65.5 172 28.5
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.3e-08 64.7 214 27.6
Lj6g0000477 Lotus japonicus HOM05D007318 ORTHO05D009289 1.3e-08 64.7 79 40.5
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.7e-08 64.3 225 27.6
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.7e-08 64.3 211 26.5
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 2.9e-08 63.5 239 27.6
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 2.9e-08 63.5 180 29.4
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 3.8e-08 63.2 227 27.8
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 3.8e-08 63.2 203 29.6
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 5.0e-08 62.8 207 28.5
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 6.5e-08 62.4 205 26.3
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 6.5e-08 62.4 202 24.3
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 8.5e-08 62.0 165 28.5
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.1e-07 61.6 165 27.9
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.1e-07 61.6 165 27.9
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.1e-07 61.6 194 25.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.1e-07 61.6 202 26.7
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.1e-07 61.6 218 26.6
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 1.5e-07 61.2 214 26.2
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.9e-07 60.8 202 26.7
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.9e-07 60.8 48 56.2
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.5e-07 60.5 204 27.5
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 2.5e-07 60.5 194 24.7
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.5e-07 60.5 214 24.8
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.5e-07 60.5 214 24.8
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.2e-07 60.1 192 27.1
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 3.2e-07 60.1 222 27.0
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.2e-07 60.1 206 27.2
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 3.2e-07 60.1 162 29.6
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 4.2e-07 59.7 222 26.1
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 4.2e-07 59.7 220 27.7
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 4.2e-07 59.7 225 26.7
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 4.2e-07 59.7 206 24.8
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 5.5e-07 59.3 242 23.6
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 7.2e-07 58.9 215 25.1
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 7.2e-07 58.9 204 27.9
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 9.4e-07 58.5 194 27.8
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 9.4e-07 58.5 191 26.2
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.2e-06 58.2 215 25.1
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.2e-06 58.2 204 25.5
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.6e-06 57.8 174 28.2
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.6e-06 56.6 202 25.2
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 3.6e-06 56.6 173 29.5
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.6e-06 56.6 40 57.5
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.6e-06 56.6 151 29.1
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 4.7e-06 56.2 204 26.5
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 4.7e-06 56.2 218 24.8
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.7e-06 56.2 167 29.3
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.1e-06 55.8 142 28.2


User provided reference genes

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