Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.3e-65 251.5 125 100.0
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.3e-50 202.2 122 87.7
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 4.5e-38 161.4 127 69.3
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 2.2e-32 142.5 126 68.3
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.6e-27 125.2 120 59.2
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.4e-26 123.2 113 63.7
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 4.4e-25 118.2 115 59.1
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 3.2e-23 112.1 127 59.1
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.0e-22 109.4 125 55.2
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.0e-22 107.8 115 53.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 1.3e-21 106.7 120 55.0
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 1.3e-21 106.7 91 63.7
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 3.0e-21 105.5 86 64.0
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 3.9e-21 105.1 126 54.0
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 6.6e-21 104.4 82 65.9
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.1e-20 103.6 124 50.8
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.5e-20 103.2 125 54.4
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 1.9e-20 102.8 109 52.3
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 1.9e-20 102.8 81 65.4
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 9.5e-20 100.5 125 50.4
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.2e-19 100.1 125 55.2
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 2.8e-19 99.0 125 52.0
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.8e-18 96.3 69 68.1
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.3e-18 95.9 124 50.0
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 5.2e-18 94.7 109 50.5
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 5.2e-18 94.7 130 45.4
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.0e-17 92.8 125 48.8
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.0e-17 92.8 109 47.7
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 5.8e-17 91.3 109 49.5
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.5e-17 90.9 121 45.5
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.5e-17 90.9 121 45.5
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 7.5e-17 90.9 124 50.0
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.2e-16 89.4 116 50.0
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 2.2e-16 89.4 136 45.6
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.7e-16 88.6 120 47.5
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 8.3e-16 87.4 109 47.7
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.1e-15 87.0 109 46.8
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.1e-15 87.0 107 48.6
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.4e-15 86.7 86 55.8
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.4e-15 85.9 138 45.7
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.2e-15 85.5 109 45.9
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 3.2e-15 85.5 109 45.9
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 5.4e-15 84.7 118 47.5
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 7.0e-15 84.3 107 47.7
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 7.0e-15 84.3 122 42.6
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.2e-15 84.0 110 46.4
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.2e-15 84.0 107 47.7
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 9.2e-15 84.0 120 42.5
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 9.2e-15 84.0 118 44.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.2e-14 83.6 118 47.5
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.2e-14 83.6 122 44.3
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.6e-14 83.2 109 45.0
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.6e-14 83.2 120 44.2
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.1e-14 82.8 90 54.4
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.7e-14 82.4 82 53.7
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 3.5e-14 82.0 94 45.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.5e-14 82.0 63 63.5
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.0e-14 81.3 79 51.9
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 6.0e-14 81.3 73 58.9
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 6.0e-14 81.3 126 46.8
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 7.8e-14 80.9 119 49.6
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 7.8e-14 80.9 110 43.6
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.0e-13 80.5 117 43.6
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 1.0e-13 80.5 121 42.1
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 2.3e-13 79.3 116 41.4
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 3.9e-13 78.6 81 51.9
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.9e-13 78.6 118 41.5
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 1.1e-12 77.0 81 48.1
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.5e-12 76.6 120 44.2
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 1.9e-12 76.3 125 44.8
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 1.9e-12 76.3 80 46.2
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.5e-12 75.9 81 49.4
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 3.3e-12 75.5 117 45.3
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 5.6e-12 74.7 108 40.7
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 7.3e-12 74.3 84 51.2
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 7.3e-12 74.3 54 68.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 7.3e-12 74.3 121 42.1
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 9.5e-12 73.9 79 49.4
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 9.5e-12 73.9 113 41.6
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.2e-11 73.6 60 65.0
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.2e-11 73.6 112 38.4
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 1.6e-11 73.2 77 54.5
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 2.1e-11 72.8 117 47.0
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.1e-11 72.8 42 73.8
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.1e-11 72.8 118 39.0
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 2.1e-11 72.8 73 46.6
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.6e-11 72.0 77 50.6
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 3.6e-11 72.0 107 41.1
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 3.6e-11 72.0 112 42.0
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 8.1e-11 70.9 58 56.9
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 8.1e-11 70.9 40 80.0
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 1.1e-10 70.5 42 69.0
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.1e-10 70.5 49 63.3
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-10 70.5 50 66.0
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 1.1e-10 70.5 58 62.1
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 1.4e-10 70.1 43 74.4
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 1.8e-10 69.7 66 53.0
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.8e-10 69.7 50 66.0
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.8e-10 69.7 54 61.1
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 2.3e-10 69.3 54 63.0
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.3e-10 69.3 54 63.0
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 3.1e-10 68.9 115 39.1
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 5.2e-10 68.2 42 66.7
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 5.2e-10 68.2 118 41.5
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 5.2e-10 68.2 43 67.4
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 8.9e-10 67.4 53 64.2
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 8.9e-10 67.4 59 55.9
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.2e-09 67.0 117 46.2
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.2e-09 67.0 117 46.2
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 1.2e-09 67.0 42 66.7
CDE04G1463 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 1.5e-09 66.6 70 50.0
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 1.5e-09 66.6 86 47.7
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.5e-09 66.6 80 48.8
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 2.6e-09 65.9 53 50.9
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 2.6e-09 65.9 64 51.6
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 3.4e-09 65.5 48 64.6
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 3.4e-09 65.5 106 35.8
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 3.4e-09 65.5 50 62.0
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 3.4e-09 65.5 113 38.9
DCAR_020077 Daucus carota HOM05D004288 ORTHO05D004997 4.4e-09 65.1 65 50.8
CDE06G1799 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 5.8e-09 64.7 58 55.2
AL6G11150 Arabidopsis lyrata HOM05D004288 ORTHO05D004997 2.9e-08 62.4 40 65.0
ECA246G3669 Erigeron canadensis HOM05D002841 ORTHO05D003158 3.7e-08 62.0 42 64.3
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 3.7e-08 62.0 67 47.8
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 4.9e-08 61.6 114 41.2
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 4.9e-08 61.6 111 36.0
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 4.9e-08 61.6 109 33.9
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 4.9e-08 61.6 52 53.8
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 6.4e-08 61.2 46 63.0
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 6.4e-08 61.2 70 48.6
Sp6g40470 Schrenkiella parvula HOM05D004288 ORTHO05D004997 8.3e-08 60.8 40 65.0
SGA_v2.0_scaffold238G43969 Striga asiatica HOM05D004288 ORTHO05D004997 8.3e-08 60.8 115 38.3
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.1e-07 60.5 65 53.8
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.1e-07 60.5 65 46.2
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 1.4e-07 60.1 55 56.4
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.4e-07 60.1 73 46.6
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.4e-07 59.3 64 53.1
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.2e-07 58.9 71 49.3
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 3.2e-07 58.9 45 62.2
BcaNung02758 Brassica carinata HOM05D004288 ORTHO05D004997 7.1e-07 57.8 41 63.4
BolC9t60183H Brassica oleracea HOM05D004288 ORTHO05D004997 7.1e-07 57.8 41 63.4
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 9.2e-07 57.4 64 48.4
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 9.2e-07 57.4 66 47.0
C09p74500 Brassica napus HOM05D004288 ORTHO05D004997 2.1e-06 56.2 48 56.2
BcaNung06280 Brassica carinata HOM05D004288 ORTHO05D004997 2.7e-06 55.8 42 61.9
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 3.5e-06 55.5 119 38.7
HPP92_013399 Vanilla planifolia HOM05D059585 ORTHO05D004997 6.0e-06 54.7 116 35.3
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 6.0e-06 54.7 111 36.0
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 7.8e-06 54.3 45 60.0
BcaNung04465 Brassica carinata HOM05D004288 ORTHO05D004997 7.8e-06 54.3 41 61.0
A10p33580 Brassica napus HOM05D004288 ORTHO05D004997 7.8e-06 54.3 41 61.0
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 7.8e-06 54.3 45 60.0
BraA10t45389Z Brassica rapa HOM05D004288 ORTHO05D004997 7.8e-06 54.3 41 61.0
CDE04G1843 Ceratophyllum demersum HOM05D004288 ORTHO05D004997 7.8e-06 54.3 46 50.0
PGR083G0410 Punica granatum HOM05D004288 ORTHO05D004997 7.8e-06 54.3 59 49.2


User provided reference genes

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