Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011473g0010 Nicotiana tabacum HOM05D007438 ORTHO05D009395 6.9e-119 430.6 216 100.0
Nitab4.5_0005259g0040 Nicotiana tabacum HOM05D007438 ORTHO05D009395 1.7e-88 329.7 188 87.8
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 2.5e-76 289.3 194 79.4
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 5.6e-68 261.5 200 69.5
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 1.5e-60 236.9 200 66.0
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 2.2e-56 223.0 187 64.2
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 1.4e-55 220.3 200 62.0
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 5.4e-55 218.4 200 61.5
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 8.9e-42 174.5 201 48.8
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 1.4e-39 167.2 202 46.5
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 1.9e-39 166.8 206 48.1
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 1.9e-39 166.8 203 46.3
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 7.8e-38 161.4 209 46.4
Prupe.3G108500 Prunus persica HOM05D007438 ORTHO05D009395 5.1e-37 158.7 191 47.6
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 1.1e-36 157.5 185 46.5
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 2.5e-36 156.4 221 43.9
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 9.6e-36 154.5 200 44.5
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 9.6e-36 154.5 210 44.3
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 9.6e-36 154.5 209 43.5
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 1.3e-35 154.1 204 44.1
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 1.6e-35 153.7 207 40.6
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 2.8e-35 152.9 207 42.0
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 3.6e-35 152.5 195 46.7
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 4.8e-35 152.1 190 46.8
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 6.2e-35 151.8 195 46.2
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 6.2e-35 151.8 188 43.6
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 8.1e-35 151.4 204 42.2
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 1.4e-34 150.6 193 47.2
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 4.0e-34 149.1 191 46.1
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 1.2e-33 147.5 184 46.7
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 1.5e-33 147.1 210 40.5
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 4.9e-32 142.1 209 43.1
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 8.4e-32 141.4 204 42.6
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 1.1e-31 141.0 195 42.1
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 3.2e-31 139.4 186 43.0
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 3.2e-31 139.4 200 41.0
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 1.6e-30 137.1 193 41.5
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 2.1e-30 136.7 187 39.6
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 2.7e-30 136.3 179 41.9
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 2.7e-30 136.3 160 47.5
Hund07732 Selenicereus undatus HOM05D007438 ORTHO05D009395 1.3e-29 134.0 198 38.9
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 2.3e-29 133.3 195 40.5
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 3.0e-29 132.9 200 40.0
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 5.1e-29 132.1 203 39.4
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 1.1e-28 131.0 188 40.4
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 1.1e-28 131.0 208 37.5
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 1.1e-28 131.0 182 45.1
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 1.9e-28 130.2 202 39.1
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 2.5e-28 129.8 197 38.6
Sc21g0004330 Simmondsia chinensis HOM05D007438 ORTHO05D009395 2.5e-28 129.8 124 51.6
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 3.3e-28 129.4 204 37.7
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 7.4e-28 128.3 204 36.3
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 7.4e-28 128.3 194 43.3
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 1.6e-27 127.1 211 38.9
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 8.1e-27 124.8 154 44.8
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 8.1e-27 124.8 154 44.8
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 1.4e-26 124.0 190 38.9
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 1.8e-26 123.6 202 38.6
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 4.0e-26 122.5 193 37.3
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 9.0e-26 121.3 166 42.8
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 9.0e-26 121.3 186 38.7
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 1.2e-25 120.9 180 38.9
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 1.5e-25 120.6 197 38.1
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 2.0e-25 120.2 215 39.5
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 3.4e-25 119.4 171 39.2
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 5.8e-25 118.6 154 42.9
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 1.3e-24 117.5 190 38.9
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 1.7e-24 117.1 180 39.4
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 2.9e-24 116.3 186 38.2
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 3.8e-24 115.9 183 36.1
Thhalv10008353m.g Eutrema salsugineum HOM05D007438 ORTHO05D009395 4.9e-24 115.5 197 38.1
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 6.4e-24 115.2 154 42.2
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 1.4e-23 114.0 184 35.9
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 2.4e-23 113.2 162 40.1
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 4.2e-23 112.5 128 43.8
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 9.3e-23 111.3 186 38.2
HPP92_021771 Vanilla planifolia HOM05D007438 ORTHO05D009395 9.3e-23 111.3 127 47.2
ECA234G1517 Erigeron canadensis HOM05D007438 ORTHO05D009395 1.2e-22 110.9 209 35.9
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 1.6e-22 110.5 221 32.6
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 1.6e-22 110.5 128 42.2
ATR0127G021 Amborella trichopoda HOM05D007438 ORTHO05D009395 3.5e-22 109.4 181 37.6
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 6.0e-22 108.6 203 35.5
Mapoly0109s0048 Marchantia polymorpha HOM05D007438 ORTHO05D009395 2.3e-21 106.7 124 42.7
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 3.9e-21 105.9 216 35.6
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 6.7e-21 105.1 190 36.3
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 6.7e-21 105.1 109 52.3
SMO111G0151 Selaginella moellendorffii HOM05D007438 ORTHO05D009395 5.6e-20 102.1 183 36.1
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 2.8e-19 99.8 117 43.6
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 2.8e-19 99.8 112 42.0
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 3.7e-19 99.4 112 44.6
arahy.Tifrunner.gnm1.ann1.28WURV Arachis hypogaea HOM05D007438 ORTHO05D009395 1.4e-18 97.4 104 48.1
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 4.0e-18 95.9 116 41.4
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 4.0e-18 95.9 180 33.3
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 3.4e-17 92.8 159 35.2
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 1.3e-16 90.9 204 32.8
TAR626G1821 Trochodendron aralioides HOM05D007438 ORTHO05D009395 1.6e-14 84.0 145 38.6
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 9.0e-10 68.2 151 29.8
Lj2g0002550 Lotus japonicus HOM05D007438 ORTHO05D009395 1.7e-08 63.9 57 54.4
Eucgr.G00061 Eucalyptus grandis HOM05D000136 ORTHO05D000080 5.5e-07 58.9 117 28.2
CiPaw.15G087800 Carya illinoinensis HOM05D000136 ORTHO05D000080 9.3e-07 58.2 115 30.4
CiPaw.15G088500 Carya illinoinensis HOM05D000136 ORTHO05D000080 1.2e-06 57.8 115 31.3
Nitab4.5_0000286g0050 Nicotiana tabacum HOM05D000136 ORTHO05D000080 1.2e-06 57.8 115 32.2
CBR_g67427 Chara braunii HOM05D000136 ORTHO05D000080 1.6e-06 57.4 116 28.4
Sed0005212 Sechium edule HOM05D000136 ORTHO05D000080 1.6e-06 57.4 115 28.7
CiPaw.15G088100 Carya illinoinensis HOM05D000136 ORTHO05D000080 2.1e-06 57.0 115 30.4
Nitab4.5_0000286g0040 Nicotiana tabacum HOM05D000136 ORTHO05D000080 2.1e-06 57.0 115 31.3
Peaxi162Scf00565g00812 Petunia axillaris HOM05D000136 ORTHO05D000080 2.1e-06 57.0 115 32.2
Psat6g022160 Pisum sativum HOM05D000136 ORTHO05D000080 2.1e-06 57.0 115 31.3
Psat6g022240 Pisum sativum HOM05D000136 ORTHO05D000080 2.1e-06 57.0 115 31.3
TAR624G0976 Trochodendron aralioides HOM05D000136 ORTHO05D000080 2.1e-06 57.0 115 31.3
VMungo0647G2315 Vigna mungo HOM05D000136 ORTHO05D000080 2.1e-06 57.0 115 31.3
Lj5g0025088 Lotus japonicus HOM05D000136 ORTHO05D000080 2.7e-06 56.6 115 30.4
Lalb_Chr08g0244901 Lupinus albus HOM05D000136 ORTHO05D000080 2.7e-06 56.6 115 31.3
MBI05_g23631_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 2.7e-06 56.6 115 28.7
MBI05_g23632_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 2.7e-06 56.6 115 28.7
TWI63G1578 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 2.7e-06 56.6 115 31.3
Aqoxy4G02523 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 3.6e-06 56.2 114 29.8
CiPaw.15G088300 Carya illinoinensis HOM05D000136 ORTHO05D000080 3.6e-06 56.2 115 31.3
Dinv27025 Davidia involucrata HOM05D000136 ORTHO05D000080 3.6e-06 56.2 114 30.7
Lalb_Chr23g0267941 Lupinus albus HOM05D000136 ORTHO05D000080 3.6e-06 56.2 115 31.3
Oeu045056.1 Olea europaea HOM05D000136 ORTHO05D000080 3.6e-06 56.2 117 29.1
CiPaw.15G088000 Carya illinoinensis HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 29.6
CBR_g48468 Chara braunii HOM05D000136 ORTHO05D000080 4.6e-06 55.8 116 27.6
ClCG05G018130 Citrullus lanatus HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 29.6
Duzib168G0689 Durio zibethinus HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 27.8
Lj7C239T6 Lonicera japonica HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 30.4
Lj7C245T5 Lonicera japonica HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 30.4
Lj5g0004770 Lotus japonicus HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 30.4
MD08G1068200 Malus domestica HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 29.6
RcHm_v2.0_Chr6g0311451 Rosa chinensis HOM05D000136 ORTHO05D000080 4.6e-06 55.8 115 30.4
Atru.chr7.1909 Acer truncatum HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 31.3
COL.COLO4_21109 Corchorus olitorius HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 28.7
Dinv27031 Davidia involucrata HOM05D000118 ORTHO05D000080 6.1e-06 55.5 114 30.7
Glyma.04G054400 Glycine max HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 30.4
Lj7C239T7 Lonicera japonica HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 30.4
Lj5g0020031 Lotus japonicus HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 30.4
Lalb_Chr11g0069001 Lupinus albus HOM05D000136 ORTHO05D000080 6.1e-06 55.5 116 30.2
MBI05_g23630_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 30.4
Medtr1g015165 Medicago truncatula HOM05D000136 ORTHO05D000080 6.1e-06 55.5 140 27.9
Nitab4.5_0003244g0020 Nicotiana tabacum HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 31.3
Peaxi162Scf01253g00002 Petunia axillaris HOM05D000136 ORTHO05D000080 6.1e-06 55.5 144 27.1
Psat6g021840 Pisum sativum HOM05D000136 ORTHO05D000080 6.1e-06 55.5 141 28.4
Thecc.09G059600 Theobroma cacao HOM05D000136 ORTHO05D000080 6.1e-06 55.5 115 28.7
Aqoxy5G00809 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 7.9e-06 55.1 117 27.4
COL.COLO4_21111 Corchorus olitorius HOM05D000136 ORTHO05D000080 7.9e-06 55.1 115 28.7
Lj5g0008929 Lotus japonicus HOM05D000136 ORTHO05D000080 7.9e-06 55.1 115 29.6
Manes.16G083600 Manihot esculenta HOM05D000136 ORTHO05D000080 7.9e-06 55.1 115 29.6
VMungo1309G2119 Vigna mungo HOM05D000136 ORTHO05D000080 7.9e-06 55.1 115 31.3


User provided reference genes

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