Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 3.6e-81 305.1 176 100.0
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 5.0e-75 284.6 176 94.3
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.1e-58 230.3 178 76.4
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.9e-58 229.6 178 75.3
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 3.3e-58 228.8 178 75.8
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 1.2e-31 140.6 190 58.9
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 3.1e-24 115.9 168 46.4
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 6.9e-24 114.8 175 48.6
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.5e-23 113.6 173 43.9
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.7e-22 110.2 167 55.1
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.9e-21 106.7 174 43.1
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 2.4e-21 106.3 166 54.8
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 2.4e-21 106.3 182 42.3
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 5.4e-21 105.1 174 50.6
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 1.2e-20 104.0 170 42.4
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 1.6e-20 103.6 177 43.5
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.6e-20 103.6 180 43.3
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 1.6e-20 103.6 179 48.0
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 1.6e-20 103.6 172 42.4
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 2.7e-20 102.8 174 42.5
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 2.7e-20 102.8 157 43.9
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 3.5e-20 102.4 138 51.4
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 6.0e-20 101.7 126 49.2
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 7.8e-20 101.3 155 51.0
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 1.7e-19 100.1 181 41.4
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 2.3e-19 99.8 163 41.7
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 3.0e-19 99.4 118 50.8
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.1e-19 98.6 165 41.8
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 6.6e-19 98.2 174 40.8
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 8.7e-19 97.8 171 39.8
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 2.5e-18 96.3 169 41.4
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.3e-18 95.5 168 41.1
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 4.3e-18 95.5 158 43.0
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 7.3e-18 94.7 173 42.2
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 1.1e-16 90.9 138 57.2
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 1.1e-16 90.9 132 47.0
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.1e-16 90.9 174 45.4
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 1.1e-16 90.9 126 46.0
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 1.8e-16 90.1 129 45.7
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 2.4e-16 89.7 164 42.1
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 2.4e-16 89.7 164 36.0
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 4.0e-16 89.0 169 41.4
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 4.0e-16 89.0 162 41.4
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 5.3e-16 88.6 118 49.2
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.2e-15 87.4 120 43.3
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 2.0e-15 86.7 161 40.4
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 2.6e-15 86.3 103 55.3
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 4.5e-15 85.5 79 55.7
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 4.5e-15 85.5 164 42.7
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 5.8e-15 85.1 188 36.7
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 1.7e-14 83.6 109 49.5
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 1.7e-14 83.6 104 50.0
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 3.8e-14 82.4 125 48.0
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 8.4e-14 81.3 126 43.7
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.1e-13 80.9 171 38.6
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 1.4e-13 80.5 72 63.9
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 1.9e-13 80.1 141 42.6
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.9e-13 80.1 78 59.0
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.9e-13 80.1 178 37.1
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 2.4e-13 79.7 115 45.2
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 4.2e-13 79.0 79 62.0
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.4e-13 78.6 139 42.4
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.4e-13 78.6 139 42.4
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 5.4e-13 78.6 119 44.5
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 7.1e-13 78.2 174 39.1
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 7.1e-13 78.2 75 60.0
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 1.2e-12 77.4 119 42.9
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.2e-12 77.4 110 47.3
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.6e-12 77.0 95 57.9
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 1.6e-12 77.0 127 46.5
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 2.1e-12 76.6 121 46.3
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 2.1e-12 76.6 110 46.4
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 2.1e-12 76.6 102 49.0
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 3.5e-12 75.9 81 55.6
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 3.5e-12 75.9 81 55.6
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 6.0e-12 75.1 104 48.1
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 7.9e-12 74.7 179 36.3
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 2.3e-11 73.2 118 42.4
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 3.0e-11 72.8 79 50.6
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 3.0e-11 72.8 78 56.4
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 3.0e-11 72.8 80 56.2
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 3.9e-11 72.4 128 41.4
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 6.7e-11 71.6 96 45.8
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 8.7e-11 71.2 93 51.6
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.5e-10 70.5 136 39.7
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 1.5e-10 70.5 79 49.4
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 1.9e-10 70.1 57 66.7
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 3.3e-10 69.3 123 42.3
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 3.3e-10 69.3 73 49.3
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.3e-10 69.3 73 49.3
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.3e-10 69.3 73 49.3
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 3.3e-10 69.3 71 52.1
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 4.3e-10 68.9 124 45.2
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 5.6e-10 68.6 142 40.8
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 7.4e-10 68.2 124 45.2
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 7.4e-10 68.2 73 47.9
Sabra04G0119900 Salix brachista HOM05D007970 ORTHO05D009943 7.4e-10 68.2 80 52.5
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 7.4e-10 68.2 102 52.0
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 9.6e-10 67.8 87 54.0
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 9.6e-10 67.8 74 44.6
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 9.6e-10 67.8 66 63.6
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 1.3e-09 67.4 128 39.8
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 1.3e-09 67.4 84 54.8
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 1.3e-09 67.4 73 50.7
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 1.6e-09 67.0 130 35.4
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 1.6e-09 67.0 102 40.2
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 1.6e-09 67.0 178 36.5
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 4.8e-09 65.5 93 49.5
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.8e-09 65.5 73 47.9
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 4.8e-09 65.5 73 49.3
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 6.2e-09 65.1 72 47.2
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 6.2e-09 65.1 74 47.3
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 6.2e-09 65.1 102 43.1
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 6.2e-09 65.1 78 50.0
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 8.1e-09 64.7 94 44.7
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 8.1e-09 64.7 73 47.9
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 1.4e-08 63.9 91 40.7
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 1.8e-08 63.5 71 47.9
Rhsim11G0193700 Rhododendron simsii HOM05D007970 ORTHO05D009943 1.8e-08 63.5 70 42.9
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 1.8e-08 63.5 78 55.1
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 2.4e-08 63.2 97 45.4
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 2.4e-08 63.2 68 51.5
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 2.4e-08 63.2 74 44.6
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.1e-08 62.8 79 49.4
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 3.1e-08 62.8 74 45.9
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 4.0e-08 62.4 81 43.2
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 5.3e-08 62.0 119 39.5
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 9.0e-08 61.2 110 40.0
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 9.0e-08 61.2 81 43.2
BcaC06g32348 Brassica carinata HOM05D010494 ORTHO05D006261 1.2e-07 60.8 98 42.9
BcaC06g32361 Brassica carinata HOM05D010494 ORTHO05D006261 1.2e-07 60.8 98 42.9
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 1.2e-07 60.8 98 42.9
Hma1.2p1_0032F.1_g019140 Hydrangea macrophylla HOM05D007970 ORTHO05D009943 1.2e-07 60.8 92 37.0
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 1.5e-07 60.5 80 42.5
Sc18g0006290 Simmondsia chinensis HOM05D007970 ORTHO05D009943 1.5e-07 60.5 74 48.6
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 2.0e-07 60.1 81 42.0
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 2.0e-07 60.1 72 45.8
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.0e-07 60.1 72 51.4
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 2.6e-07 59.7 80 51.2
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 2.6e-07 59.7 80 51.2
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 2.6e-07 59.7 90 46.7
Oeu028958.1 Olea europaea HOM05D007970 ORTHO05D009943 2.6e-07 59.7 118 35.6
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 2.6e-07 59.7 106 40.6
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 2.6e-07 59.7 106 40.6
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 3.4e-07 59.3 79 50.6
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 3.4e-07 59.3 79 50.6
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 3.4e-07 59.3 79 50.6
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 3.4e-07 59.3 69 46.4
ClCG02G012110 Citrullus lanatus HOM05D007970 ORTHO05D009943 3.4e-07 59.3 80 41.2
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 4.5e-07 58.9 102 36.3
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 4.5e-07 58.9 60 51.7
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 5.8e-07 58.5 105 39.0
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.8e-07 58.5 61 52.5
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 7.6e-07 58.2 95 35.8
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 7.6e-07 58.2 74 43.2
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 1.3e-06 57.4 82 48.8
CSS0030284 Camellia sinensis var. sinensis HOM05D007970 ORTHO05D009943 1.3e-06 57.4 75 42.7
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 1.3e-06 57.4 64 53.1
Dinv14128 Davidia involucrata HOM05D007970 ORTHO05D009943 1.7e-06 57.0 65 49.2
Oeu015553.1 Olea europaea HOM05D007970 ORTHO05D009943 1.7e-06 57.0 84 41.7
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 1.7e-06 57.0 82 50.0
Lsat_1_v5_gn_4_72040 Lactuca sativa HOM05D007970 ORTHO05D009943 2.2e-06 56.6 80 45.0
CAN.G588.103 Capsicum annuum HOM05D007970 ORTHO05D009943 3.8e-06 55.8 108 34.3
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 3.8e-06 55.8 80 47.5
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 3.8e-06 55.8 72 43.1
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 4.9e-06 55.5 81 48.1
BcaB02g08564 Brassica carinata HOM05D006872 ORTHO05D006261 6.4e-06 55.1 63 55.6
Oeu045100.1 Olea europaea HOM05D007970 ORTHO05D009943 8.4e-06 54.7 105 35.2
SGA_v2.0_scaffold58G20343 Striga asiatica HOM05D007970 ORTHO05D009943 8.4e-06 54.7 71 43.7


User provided reference genes

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