Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1475.3 740 100.0
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1402.5 742 94.7
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1396.3 743 94.1
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1390.2 743 93.7
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1389.8 745 93.7
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1388.2 743 93.3
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1309.3 659 98.9
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1298.1 745 85.9
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1294.6 747 85.4
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1293.1 743 86.1
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1282.3 746 84.9
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1276.5 775 83.1
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1276.2 744 84.4
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1273.8 743 85.3
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 743 85.6
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1272.7 747 84.9
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 744 84.9
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1271.1 743 84.0
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1266.9 741 83.8
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1265.8 745 84.6
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1263.1 747 83.9
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1262.7 739 83.5
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 747 82.9
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1260.0 746 83.2
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 746 83.6
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1258.4 746 83.2
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1257.7 746 83.1
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1257.7 746 83.2
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1257.3 747 83.7
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1256.9 744 84.5
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1256.5 745 82.8
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 742 83.8
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1256.1 748 83.2
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1255.7 798 79.4
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 745 83.6
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1255.4 745 83.2
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1255.0 745 83.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1254.6 748 82.6
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1253.4 746 83.1
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1251.9 743 84.3
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1251.5 746 83.0
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1250.7 743 83.4
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1250.3 744 83.1
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1249.2 757 82.8
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 748 82.8
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1248.4 746 82.7
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1248.0 743 83.6
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1248.0 744 82.3
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1246.5 747 83.0
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 742 83.3
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1245.3 748 82.5
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 742 82.3
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1245.0 742 82.7
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 744 82.1
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1243.8 744 83.1
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1243.4 744 83.3
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 741 82.6
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 747 81.8
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1241.1 749 82.5
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 743 82.4
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1239.9 744 82.5
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 744 82.7
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1234.2 740 82.8
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1233.0 755 81.3
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 744 82.7
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1232.6 745 82.1
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1231.5 743 82.9
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1231.1 743 82.0
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1228.8 744 81.2
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 745 82.8
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1227.2 745 81.2
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1226.8 756 80.8
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1224.5 745 80.7
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1223.8 747 80.9
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 747 81.0
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1223.4 712 83.8
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 744 80.9
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1220.3 742 82.2
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 738 80.9
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 744 81.5
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 840 73.9
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1213.4 746 80.8
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1211.8 695 84.0
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 745 79.5
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 742 80.1
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 745 79.6
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 745 79.5
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 745 79.3
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1204.9 746 79.2
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 745 79.2
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 745 79.2
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1201.4 738 80.8
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1199.9 745 79.2
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1198.7 744 78.5
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1194.9 744 78.9
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 743 78.5
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 717 81.9
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1192.6 744 78.4
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 717 81.6
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 744 78.0
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1187.6 750 78.1
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1176.0 656 87.3
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1173.7 737 78.0
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1169.1 744 78.6
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1168.7 777 74.6
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1164.8 734 78.3
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1163.7 743 77.8
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1163.3 747 78.0
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1139.0 741 76.7
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1136.3 745 77.4
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1135.6 656 84.0
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1135.6 656 83.8
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1115.5 770 72.9
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 0.0e+00 1114.8 656 83.7
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 0.0e+00 1106.7 1055 57.9
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1104.0 734 74.5
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 3.5e-311 1071.2 747 74.6
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 1.2e-308 1062.8 623 85.4
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-280 969.1 676 69.8
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.9e-280 969.1 676 69.8
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 9.2e-280 966.8 676 69.7
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 1.0e-278 963.4 678 67.1
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 2.3e-278 962.2 674 69.1
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 6.6e-278 960.7 678 68.3
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 4.0e-275 951.4 676 68.2
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 4.2e-256 888.3 593 75.4
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 2.1e-252 875.9 593 74.9
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 4.9e-249 864.8 678 61.4
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 7.1e-232 807.7 679 58.6
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 7.9e-223 777.7 692 57.7
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.3e-212 743.8 677 57.2
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 2.3e-206 723.0 672 60.4
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.2e-197 694.1 676 52.4
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 3.0e-174 616.3 706 47.2
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 1.0e-161 574.7 361 77.0
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 5.6e-160 568.9 319 90.3
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 2.4e-155 553.5 305 85.9
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 9.0e-142 508.4 298 85.9
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 6.4e-132 475.7 307 76.2
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 8.4e-132 475.3 301 79.4
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.4e-117 426.8 292 70.2
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.9e-107 394.4 237 81.0
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 1.0e-97 362.1 241 74.7
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 8.8e-97 359.0 296 66.2
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.1e-94 350.5 295 64.1
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 2.2e-92 344.4 219 79.0
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 8.8e-89 332.4 221 77.4
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 1.8e-73 281.6 172 76.2
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 7.7e-69 266.2 369 40.4
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 5.5e-67 260.0 391 45.8
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 2.8e-66 257.7 126 96.0
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.3e-63 246.5 150 79.3
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 3.3e-59 234.2 114 95.6
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 3.3e-59 234.2 260 52.3
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 5.6e-51 206.8 138 78.3
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 2.7e-45 188.0 117 77.8
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 3.6e-42 177.6 154 61.0
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 6.4e-39 166.8 102 71.6
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 1.9e-38 165.2 122 70.5
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 1.5e-35 155.6 91 82.4
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 6.2e-34 150.2 141 52.5
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 3.2e-30 137.9 113 68.1
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 4.2e-30 137.5 83 80.7
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 1.0e-28 132.9 136 57.4
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 1.9e-27 128.6 105 61.0
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 4.8e-26 124.0 61 93.4
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.9e-23 114.8 99 61.6
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 4.9e-23 114.0 220 30.9
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 6.4e-23 113.6 136 53.7
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 80.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 7.1e-14 83.6 56 73.2
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.1e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 3.3e-11 74.7 42 85.7
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.1e-10 72.0 38 89.5


User provided reference genes

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