Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.2e-237 824.3 420 100.0
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 8.4e-137 491.1 442 58.6
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.1e-123 446.0 411 59.9
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.6e-111 406.0 419 59.2
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.7e-87 326.6 410 52.4
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.7e-76 289.7 215 72.6
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 5.9e-74 282.3 412 39.8
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.3e-73 280.4 371 41.0
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.9e-72 277.3 356 43.0
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 2.5e-72 276.9 358 42.7
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 9.5e-72 275.0 355 44.2
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 9.5e-72 275.0 356 43.5
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 9.5e-72 275.0 358 41.3
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.8e-71 273.5 355 42.8
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 2.3e-70 270.4 355 43.1
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 2.3e-70 270.4 355 43.1
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 3.0e-70 270.0 355 42.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 1.2e-69 268.1 358 42.2
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 1.2e-69 268.1 356 41.9
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 2.0e-69 267.3 355 41.7
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.6e-69 266.9 353 42.2
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 3.4e-69 266.5 359 40.1
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 4.4e-69 266.2 365 39.7
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 5.7e-69 265.8 355 42.3
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 5.7e-69 265.8 386 41.2
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 7.5e-69 265.4 359 41.8
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 7.5e-69 265.4 357 41.7
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 9.8e-69 265.0 357 40.6
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.3e-68 264.6 355 39.7
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.3e-68 264.6 355 40.6
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.7e-68 263.1 417 37.6
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 6.3e-68 262.3 377 39.5
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 8.3e-68 261.9 411 38.7
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.1e-67 261.5 355 40.8
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 1.1e-67 261.5 355 39.2
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 1.4e-67 261.2 351 41.9
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.8e-67 260.8 384 40.1
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 3.1e-67 260.0 354 40.7
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 4.1e-67 259.6 353 41.6
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 5.4e-67 259.2 385 39.5
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 5.4e-67 259.2 357 39.2
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 2.0e-66 257.3 353 41.1
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 3.5e-66 256.5 352 38.6
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 5.9e-66 255.8 356 37.6
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 1.7e-65 254.2 358 38.3
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.7e-65 254.2 372 39.8
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 1.7e-65 254.2 356 38.5
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 6.6e-65 252.3 351 39.9
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 8.6e-65 251.9 355 38.3
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 1.1e-64 251.5 409 36.9
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.5e-64 251.1 354 39.0
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.9e-64 250.8 354 38.1
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.9e-64 250.8 375 38.1
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 2.5e-64 250.4 410 36.6
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.3e-64 249.6 402 36.1
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.3e-64 248.8 354 39.8
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 9.5e-64 248.4 354 39.0
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 1.6e-63 247.7 354 38.4
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.1e-63 247.3 358 37.7
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.8e-63 246.9 398 37.9
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.8e-63 246.9 355 38.3
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.8e-63 246.9 412 37.1
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 2.8e-63 246.9 356 39.0
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 3.6e-63 246.5 397 36.3
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 3.6e-63 246.5 360 38.9
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.0e-62 245.0 356 39.0
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 1.4e-62 244.6 414 36.7
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.0e-62 243.4 361 36.6
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 6.8e-62 242.3 358 38.0
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 6.8e-62 242.3 358 38.0
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 6.8e-62 242.3 358 37.2
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.2e-61 241.5 357 37.3
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.2e-61 241.5 367 39.2
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.5e-61 241.1 345 40.6
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 2.0e-61 240.7 352 38.1
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 2.6e-61 240.4 386 37.8
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 3.4e-61 240.0 354 37.3
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 3.4e-61 240.0 361 36.6
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 4.4e-61 239.6 356 37.9
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 5.8e-61 239.2 354 38.7
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 5.8e-61 239.2 350 38.3
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 7.5e-61 238.8 358 36.6
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 7.5e-61 238.8 358 36.6
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.5e-61 238.8 351 36.8
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.9e-60 236.9 358 36.3
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 6.4e-60 235.7 353 37.4
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 6.4e-60 235.7 409 35.2
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 8.3e-60 235.3 357 36.4
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 8.3e-60 235.3 356 38.8
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 1.9e-59 234.2 364 36.0
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.9e-59 234.2 350 37.7
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.4e-59 233.8 356 37.9
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 4.1e-59 233.0 411 33.8
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.2e-58 231.5 364 37.4
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.6e-58 231.1 395 35.7
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.7e-58 230.3 357 37.3
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 6.0e-58 229.2 355 37.5
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 7.8e-58 228.8 355 37.7
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 7.8e-58 228.8 351 37.9
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 3.9e-57 226.5 382 36.1
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 3.9e-57 226.5 382 36.1
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 1.1e-56 224.9 356 34.6
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 2.5e-56 223.8 360 36.9
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 2.8e-55 220.3 349 36.1
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.6e-55 219.9 363 34.4
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 6.2e-55 219.2 349 35.0
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 8.0e-55 218.8 395 35.9
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 3.1e-54 216.9 364 34.9
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.1e-54 216.9 355 35.8
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 8.9e-54 215.3 373 33.5
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.4e-51 208.0 318 35.2
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 1.9e-51 207.6 351 33.0
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 7.0e-51 205.7 410 32.7
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.2e-50 204.9 359 35.9
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 1.6e-50 204.5 355 34.9
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.6e-50 203.0 242 44.6
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.0e-50 202.6 347 34.6
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.3e-49 201.4 214 43.9
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 1.7e-49 201.1 367 35.4
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 1.7e-49 201.1 275 38.2
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.5e-48 198.0 379 34.0
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 4.3e-48 196.4 281 39.9
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 9.5e-48 195.3 353 32.0
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 2.3e-46 190.7 373 32.4
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 1.2e-45 188.3 341 34.6
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 9.9e-45 185.3 391 32.5
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 7.1e-43 179.1 355 33.5
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.2e-42 178.3 361 31.0
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 7.8e-42 175.6 367 32.4
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 7.8e-42 175.6 356 30.1
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.7e-41 174.5 217 41.0
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 3.0e-41 173.7 223 39.9
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 4.3e-40 169.9 217 38.7
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 7.3e-40 169.1 360 31.4
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 7.3e-40 169.1 176 47.7
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.8e-38 164.5 216 37.0
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 2.6e-37 160.6 276 36.2
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 6.6e-33 146.0 238 36.1
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 1.9e-32 144.4 288 34.0
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 3.1e-30 137.1 156 46.2
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 1.4e-27 128.3 189 40.2
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 3.0e-25 120.6 124 48.4
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.3e-20 105.1 116 44.0
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.1e-19 102.1 109 43.1
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 2.7e-18 97.4 119 42.9
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 1.4e-14 85.1 205 29.3
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 9.0e-14 82.4 165 32.1
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.4e-11 75.1 97 42.3
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.2e-11 73.9 83 44.6
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 3.2e-11 73.9 83 44.6
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 4.2e-11 73.6 86 37.2
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 6.0e-10 69.7 210 25.7
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 6.7e-09 66.2 97 39.2
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 8.7e-09 65.9 218 23.9
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 3.3e-08 63.9 219 25.6
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 3.3e-08 63.9 219 25.6
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 7.4e-08 62.8 98 38.8
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 9.6e-08 62.4 137 29.2
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 1.6e-07 61.6 206 25.7
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 1.6e-07 61.6 210 23.8
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 2.8e-07 60.8 211 24.6
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 3.7e-07 60.5 210 23.8
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 8.2e-07 59.3 208 23.1
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.1e-06 58.9 214 23.8
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 1.1e-06 58.9 71 40.8
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 1.4e-06 58.5 210 24.3
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 1.4e-06 58.5 210 23.8
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 1.8e-06 58.2 210 25.2
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.4e-06 57.8 211 23.2
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 3.1e-06 57.4 92 32.6
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 4.0e-06 57.0 210 24.8
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 9.0e-06 55.8 99 29.3


User provided reference genes

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