Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 0.0e+00 1295.8 676 100.0
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 0.0e+00 1087.4 635 92.8
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 8.1e-283 976.9 668 81.6
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 2.6e-281 971.8 668 81.3
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 6.4e-280 967.2 668 81.0
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 7.8e-201 704.5 670 60.9
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 1.7e-187 660.2 682 56.6
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.9e-186 656.8 669 57.8
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.9e-186 656.8 669 57.8
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 1.8e-181 640.2 670 56.1
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 8.9e-181 637.9 670 56.3
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 4.4e-180 635.6 670 56.0
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 2.4e-178 629.8 672 55.5
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.7e-177 626.3 644 57.6
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 7.8e-177 624.8 665 56.2
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.0e-176 624.4 675 55.4
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 8.7e-176 621.3 669 55.8
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 4.9e-171 605.5 666 53.9
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 2.4e-170 603.2 656 54.3
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.1e-169 600.1 668 54.9
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 2.1e-169 600.1 669 53.7
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 3.9e-168 595.9 670 54.8
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.1e-167 594.3 689 53.0
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 6.2e-166 588.6 672 53.4
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 4.0e-165 585.9 670 51.3
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 9.0e-165 584.7 672 53.1
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 2.2e-163 580.1 694 51.2
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 2.2e-163 580.1 694 51.2
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 3.8e-163 579.3 670 52.7
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 8.4e-163 578.2 670 52.4
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 8.4e-163 578.2 671 52.2
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.4e-162 577.4 617 56.7
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 2.4e-162 576.6 696 51.7
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 1.3e-160 570.9 669 52.3
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 4.0e-157 559.3 706 49.6
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 2.6e-156 556.6 671 51.3
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 1.3e-155 554.3 662 52.9
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 3.2e-154 549.7 697 50.4
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 9.3e-154 548.1 637 52.3
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 2.3e-152 543.5 664 51.1
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 3.9e-152 542.7 662 50.9
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 1.1e-151 541.2 673 52.6
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 1.9e-151 540.4 662 51.7
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 4.3e-151 539.3 666 50.3
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 1.3e-150 537.7 668 50.7
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 1.3e-150 537.7 650 51.7
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.6e-150 537.3 711 47.5
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 2.8e-150 536.6 650 51.2
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 6.2e-150 535.4 659 50.4
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 2.0e-148 530.4 669 49.8
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 1.0e-147 528.1 689 48.5
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 2.9e-147 526.6 669 49.2
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 1.9e-146 523.9 665 49.5
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 4.2e-146 522.7 658 50.0
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 4.6e-145 519.2 663 49.2
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 7.9e-145 518.5 658 49.5
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 1.8e-144 517.3 670 49.6
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 6.7e-144 515.4 678 48.8
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.5e-143 513.5 795 43.8
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 2.8e-142 510.0 680 46.6
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 2.2e-139 500.4 679 48.0
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 3.8e-139 499.6 554 52.5
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 3.8e-139 499.6 779 43.3
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 8.5e-139 498.4 645 49.8
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 8.2e-134 481.9 665 47.7
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 2.4e-133 480.3 665 46.9
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 4.1e-133 479.6 667 47.4
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 7.7e-132 475.3 662 46.8
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 5.0e-131 472.6 667 46.5
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 3.6e-129 466.5 699 44.8
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 1.0e-128 464.9 619 49.1
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 1.8e-128 464.2 693 44.7
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 2.3e-128 463.8 662 46.7
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 8.8e-128 461.8 693 44.4
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 2.6e-127 460.3 666 44.9
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 3.3e-127 459.9 677 43.6
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 7.4e-127 458.8 717 44.1
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 8.2e-126 455.3 541 52.1
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.1e-125 454.9 518 54.8
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 2.0e-124 450.7 693 44.0
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 8.5e-123 445.3 630 46.8
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 1.1e-122 444.9 451 58.8
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 9.4e-122 441.8 717 43.4
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 1.3e-118 431.4 556 48.2
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 2.2e-118 430.6 480 54.2
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.4e-112 411.4 678 42.0
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 5.2e-112 409.5 669 42.5
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 3.4e-111 406.8 479 53.0
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 9.1e-109 398.7 680 41.2
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 2.7e-105 387.1 667 41.8
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 6.1e-105 386.0 483 49.1
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 3.0e-104 383.6 507 48.7
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.4e-101 374.8 728 37.8
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 6.6e-99 365.9 680 37.6
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 2.4e-93 347.4 661 37.8
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 1.7e-91 341.3 668 37.1
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 4.3e-90 336.7 412 51.2
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 5.6e-90 336.3 476 46.8
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 2.1e-89 334.3 659 37.3
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 3.6e-89 333.6 668 37.4
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 6.4e-86 322.8 519 43.0
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 5.2e-72 276.6 187 81.3
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 3.7e-70 270.4 859 30.7
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 6.2e-65 253.1 370 49.2
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 7.6e-63 246.1 159 83.0
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 1.7e-62 245.0 215 60.9
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 1.4e-61 241.9 540 33.9
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 4.2e-61 240.4 326 51.2
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 9.0e-56 222.6 261 54.4
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 5.8e-47 193.4 165 65.5
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 6.7e-43 179.9 823 28.1
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 2.5e-42 177.9 205 50.2
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 9.0e-40 169.5 754 28.8
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.0e-38 166.0 203 47.3
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 1.9e-37 161.8 150 62.7
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 1.5e-26 125.6 310 34.5
SEGI_17957 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 3.3e-26 124.4 197 39.6
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 1.1e-21 109.4 93 63.4
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 1.8e-19 102.1 78 67.9
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.5e-13 81.6 77 62.3
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 9.4e-13 79.7 78 60.3
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.1e-12 78.6 80 57.5
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.7e-11 73.6 100 45.0
Sc18g0007380 Simmondsia chinensis HOM05D006229 ORTHO05D007190 6.3e-09 67.0 87 49.4
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 5.3e-08 63.9 88 43.2
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 7.0e-08 63.5 50 70.0
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.6e-07 62.4 47 57.4
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 3.5e-07 61.2 34 88.2
SHI04983 Sapria himalayana HOM05D000023 ORTHO05D000014 2.9e-06 58.2 114 40.4


User provided reference genes

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