Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.0e-78 296.6 143 100.0
Nitab4.5_0001097g0130 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.5e-57 223.8 122 88.5
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.1e-35 153.7 199 46.2
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 1.8e-35 152.9 195 47.7
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 2.7e-34 149.1 152 55.3
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 5.6e-32 141.4 184 46.2
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.2e-31 140.2 185 44.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 2.1e-31 139.4 185 47.6
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.1e-31 139.4 190 45.3
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 2.1e-31 139.4 196 43.4
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 8.0e-31 137.5 183 42.6
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 1.4e-30 136.7 185 43.8
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 2.3e-30 136.0 183 43.7
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 3.0e-30 135.6 190 43.7
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 5.2e-30 134.8 196 43.9
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 8.9e-30 134.0 191 41.4
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 1.2e-29 133.7 190 43.7
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 2.0e-29 132.9 186 45.7
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 2.0e-29 132.9 190 42.1
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 2.0e-29 132.9 180 43.3
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.0e-29 132.9 182 42.3
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 2.6e-29 132.5 193 42.5
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 4.4e-29 131.7 190 41.1
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 4.4e-29 131.7 189 40.7
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 9.8e-29 130.6 182 41.8
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.3e-28 130.2 179 44.1
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 2.2e-28 129.4 181 45.9
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 2.9e-28 129.0 183 42.6
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 2.9e-28 129.0 185 41.6
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 4.9e-28 128.3 188 42.0
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 4.9e-28 128.3 181 45.3
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.9e-28 128.3 185 40.5
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.4e-28 127.9 187 42.2
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 1.1e-27 127.1 182 42.9
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.4e-27 126.7 195 40.5
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 2.4e-27 125.9 183 40.4
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 4.1e-27 125.2 185 41.1
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 9.2e-27 124.0 182 42.9
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 2.7e-26 122.5 181 39.8
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 6.0e-26 121.3 184 41.3
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 6.0e-26 121.3 184 40.8
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.0e-26 121.3 184 40.8
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.0e-26 121.3 184 40.8
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 7.8e-26 120.9 188 39.9
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 1.3e-25 120.2 192 38.5
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 1.7e-25 119.8 193 38.9
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.0e-25 119.0 195 39.5
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 5.0e-25 118.2 192 40.6
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 8.6e-25 117.5 185 39.5
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 8.6e-25 117.5 194 39.2
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 1.1e-24 117.1 181 40.3
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 1.1e-24 117.1 192 39.1
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.5e-24 116.7 179 40.8
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.9e-24 116.3 184 39.1
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.9e-24 116.3 184 39.1
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 3.3e-24 115.5 180 42.8
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 4.3e-24 115.2 184 38.6
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 5.6e-24 114.8 186 38.2
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 7.3e-24 114.4 174 43.7
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 7.3e-24 114.4 168 41.1
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 9.5e-24 114.0 184 40.8
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.6e-23 113.2 186 39.8
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.0e-23 110.9 180 38.9
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 8.0e-23 110.9 179 38.0
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.1e-22 110.5 181 40.9
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 1.8e-22 109.8 186 38.2
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 2.3e-22 109.4 179 38.5
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.3e-22 109.4 178 41.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 6.8e-22 107.8 180 35.6
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.2e-21 107.1 182 38.5
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.5e-21 106.7 183 41.5
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 1.5e-21 106.7 183 36.1
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 2.6e-21 105.9 186 36.0
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 2.6e-21 105.9 189 37.6
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.4e-21 105.5 190 36.8
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 4.4e-21 105.1 192 34.9
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.7e-20 103.2 190 36.3
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 2.9e-20 102.4 186 35.5
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.7e-20 102.1 186 36.0
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 4.9e-20 101.7 182 35.7
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 4.9e-20 101.7 184 37.5
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 8.3e-20 100.9 177 37.3
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 8.3e-20 100.9 177 37.3
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 8.3e-20 100.9 177 37.3
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.1e-19 100.5 182 35.2
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 1.9e-19 99.8 209 34.4
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 4.1e-19 98.6 184 34.2
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 9.2e-19 97.4 189 37.0
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 9.2e-19 97.4 189 37.0
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.2e-18 97.1 188 35.6
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.6e-18 96.7 169 34.9
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 1.6e-18 96.7 181 37.0
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 1.6e-18 96.7 176 38.1
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.6e-18 96.7 191 34.0
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 2.1e-18 96.3 209 35.4
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.7e-18 95.9 181 37.0
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 3.5e-18 95.5 199 35.2
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 4.6e-18 95.1 191 36.1
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 3.9e-17 92.0 190 34.7
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 5.0e-17 91.7 191 35.1
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 5.0e-17 91.7 191 35.1
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.1e-16 90.5 189 37.0
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.5e-16 90.1 189 37.0
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.5e-16 90.1 81 55.6
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 4.3e-16 88.6 188 35.1
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 7.3e-16 87.8 177 33.9
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.1e-15 86.3 204 32.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 2.1e-15 86.3 194 33.5
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 6.2e-15 84.7 187 34.2
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 6.2e-15 84.7 189 33.9
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 1.8e-14 83.2 181 36.5
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 4.0e-14 82.0 206 34.5
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 5.2e-14 81.6 202 31.7
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 6.8e-14 81.3 203 35.5
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.8e-13 78.2 204 32.4
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 7.5e-13 77.8 193 31.6
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 1.3e-12 77.0 197 34.0
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 2.2e-12 76.3 176 31.8
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 2.2e-12 76.3 179 30.7
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 3.7e-12 75.5 195 31.8
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 4.9e-12 75.1 196 33.7
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 8.3e-12 74.3 178 34.8
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 8.3e-12 74.3 178 34.8
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 8.3e-12 74.3 178 34.8
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-11 73.9 177 33.9
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 1.1e-11 73.9 176 33.5
MD13G1165100 Malus domestica HOM05D005099 ORTHO05D006087 1.1e-11 73.9 114 42.1
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 5.4e-11 71.6 177 31.6
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 7.1e-11 71.2 222 30.6
Lalb_Chr15g0086051 Lupinus albus HOM05D005099 ORTHO05D006087 9.2e-11 70.9 77 50.6
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 7.8e-10 67.8 216 29.6
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 7.8e-10 67.8 216 29.6
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 1.3e-09 67.0 203 30.0
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 2.3e-09 66.2 219 29.7
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 8.6e-09 64.3 120 35.0
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.5e-08 63.5 176 31.2
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 2.5e-08 62.8 204 28.9
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 4.3e-08 62.0 204 28.4
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 2.1e-07 59.7 162 29.0
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 4.0e-06 55.5 112 39.3
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.0e-06 55.5 100 34.0
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 4.0e-06 55.5 178 25.3
CDE02G1545 Ceratophyllum demersum HOM05D006941 ORTHO05D008361 5.2e-06 55.1 72 47.2
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 6.8e-06 54.7 107 33.6


User provided reference genes

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