Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 6.1e-277 956.8 477 100.0
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.5e-251 872.5 528 85.6
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 8.7e-239 830.1 528 80.9
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.3e-238 827.8 528 80.7
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 2.1e-221 772.3 528 75.2
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.8e-221 771.9 525 75.4
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 1.5e-214 749.6 528 73.1
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 1.9e-214 749.2 528 75.6
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 7.2e-209 730.7 528 72.3
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 4.3e-206 721.5 528 68.9
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.6e-205 719.5 528 69.1
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 5.3e-204 714.5 528 69.1
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 3.9e-199 698.4 526 68.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.9e-194 682.2 528 67.8
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 1.1e-193 680.2 526 66.5
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 1.1e-193 680.2 525 66.1
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.4e-193 679.9 548 64.4
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 1.4e-193 679.9 526 66.7
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 3.2e-193 678.7 528 66.9
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 5.5e-193 677.9 528 66.9
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 7.2e-193 677.6 525 65.9
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 7.2e-193 677.6 528 68.6
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 9.4e-193 677.2 525 65.5
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.7e-192 675.6 528 66.7
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 2.3e-191 672.5 528 66.7
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.0e-191 672.2 526 65.8
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.1e-191 671.4 528 68.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 6.7e-191 671.0 526 65.8
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 8.8e-191 670.6 526 65.8
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 2.0e-190 669.5 526 66.0
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.6e-190 669.1 525 66.9
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 3.3e-190 668.7 528 66.1
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 5.7e-190 667.9 528 65.3
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 1.8e-188 662.9 528 64.8
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.9e-186 655.6 526 65.2
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 2.9e-186 655.6 528 65.2
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.9e-186 655.6 530 64.7
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 3.8e-186 655.2 528 65.2
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.8e-186 655.2 518 65.3
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.5e-186 654.1 518 65.4
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.1e-185 653.7 528 63.8
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 9.4e-185 650.6 525 64.8
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 9.4e-185 650.6 521 63.9
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.2e-184 650.2 528 63.4
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.6e-184 649.8 528 63.8
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 2.7e-184 649.0 528 63.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 3.6e-184 648.7 488 69.5
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 6.1e-184 647.9 528 63.3
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 8.0e-184 647.5 526 63.1
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.8e-183 646.4 528 64.0
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 3.0e-183 645.6 529 65.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 4.0e-183 645.2 525 62.7
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 5.2e-183 644.8 525 64.6
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 5.2e-183 644.8 528 62.3
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 2.0e-182 642.9 526 64.1
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 2.0e-182 642.9 525 64.6
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.0e-182 642.9 416 76.7
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.0e-182 642.9 601 57.6
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 4.4e-182 641.7 404 81.2
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 5.7e-182 641.3 527 63.6
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.7e-182 641.3 503 66.0
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 7.5e-182 641.0 525 64.0
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 2.2e-181 639.4 523 64.2
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 2.2e-181 639.4 525 64.2
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-180 637.1 528 63.4
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.1e-180 637.1 524 63.0
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 3.1e-180 635.6 528 63.6
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 3.1e-180 635.6 528 63.3
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 4.1e-180 635.2 526 63.5
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 5.3e-180 634.8 529 63.5
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 5.3e-180 634.8 529 63.5
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 5.3e-180 634.8 526 62.4
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 7.0e-180 634.4 527 61.7
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.6e-179 633.3 520 62.1
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 2.7e-179 632.5 531 63.3
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.5e-179 632.1 528 63.6
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 3.5e-179 632.1 526 62.0
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 4.5e-179 631.7 529 63.5
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 5.9e-179 631.3 529 63.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.9e-179 631.3 529 62.4
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.7e-179 630.9 529 63.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.0e-178 630.6 481 67.6
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 1.0e-178 630.6 528 62.7
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-178 630.2 528 63.3
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.3e-178 630.2 529 63.3
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 1.7e-178 629.8 528 63.3
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.9e-178 629.0 529 63.3
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.9e-178 629.0 527 62.0
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 5.0e-178 628.2 526 63.5
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.5e-177 625.9 527 61.9
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.6e-176 623.2 510 64.5
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.7e-176 622.5 528 62.5
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.6e-176 622.1 510 64.3
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.6e-176 622.1 526 62.5
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 6.1e-176 621.3 527 61.7
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 8.0e-176 620.9 520 61.9
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.8e-175 619.8 529 60.7
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 4.0e-175 618.6 566 58.7
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.0e-175 618.6 526 62.4
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 4.0e-175 618.6 500 65.0
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 5.2e-175 618.2 509 64.0
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 6.8e-175 617.8 566 58.5
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 8.8e-175 617.5 527 61.1
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 7.5e-174 614.4 479 65.3
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 1.4e-172 610.1 478 64.6
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.8e-172 609.8 525 60.4
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 7.2e-169 597.8 567 57.3
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 3.6e-168 595.5 545 60.4
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 8.0e-168 594.3 510 61.0
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 6.8e-167 591.3 526 59.3
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.5e-166 590.1 524 59.9
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 2.2e-165 586.3 518 59.5
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.3e-165 584.7 513 59.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 4.5e-163 578.6 598 53.3
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 4.5e-163 578.6 551 57.5
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 2.9e-162 575.9 465 63.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 5.0e-162 575.1 528 57.8
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.6e-162 574.7 525 58.1
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 7.3e-161 571.2 473 63.0
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 7.3e-161 571.2 417 70.5
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 9.8e-158 560.8 525 56.8
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-156 556.2 456 64.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.0e-154 550.8 530 57.2
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.8e-151 540.0 404 67.6
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.6e-137 491.9 273 87.5
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 3.8e-133 479.2 664 44.0
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.1e-132 477.6 546 48.4
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.6e-131 473.8 427 57.6
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 3.5e-131 472.6 555 48.1
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 9.9e-126 454.5 488 52.9
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 2.1e-123 446.8 421 57.0
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.3e-114 416.8 506 48.8
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.4e-110 402.9 289 73.0
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 1.5e-102 377.5 293 66.2
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.3e-98 364.4 342 57.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 5.1e-90 335.9 253 69.2
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 8.2e-80 302.0 256 58.6
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 7.2e-76 288.9 277 56.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 3.5e-62 243.4 505 36.4
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 9.4e-60 235.3 212 57.5
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 1.0e-58 231.9 434 35.0
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 1.8e-55 221.1 353 37.4
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 5.2e-50 203.0 243 49.4
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.2e-40 171.0 189 50.3
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.6e-38 163.3 121 66.9
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 5.9e-38 162.9 151 55.6
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 7.8e-38 162.5 110 75.5
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 4.9e-32 143.3 172 43.0
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.1e-31 140.2 259 37.8
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.2e-30 138.7 259 37.5
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 5.6e-28 129.8 68 86.8
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.2e-25 122.1 63 92.1
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 1.4e-23 115.2 76 75.0
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 7.3e-20 102.8 117 56.4
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.6e-14 85.1 145 29.7
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 1.6e-11 75.1 127 39.4
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 5.8e-09 66.6 141 34.0
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 7.6e-09 66.2 134 29.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 1.3e-08 65.5 86 43.0
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.3e-08 65.5 36 86.1
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.4e-07 61.2 109 41.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 4.2e-07 60.5 36 75.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 3.5e-06 57.4 74 40.5
PRCOL_00005868 Prasinoderma coloniale HOM05D000740 ORTHO05D007141 4.6e-06 57.0 140 28.6


User provided reference genes

Program Settings