Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 0.0e+00 1162.9 574 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.1e-207 726.1 479 80.2
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.3e-201 706.1 474 79.5
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.3e-200 701.0 472 79.2
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.3e-200 701.0 472 79.2
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 4.7e-199 698.4 475 78.7
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.1e-198 697.2 473 78.6
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.8e-198 696.4 473 79.1
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.8e-197 691.4 472 77.8
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-196 689.9 467 78.6
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-196 689.9 467 78.6
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.9e-195 686.4 460 78.5
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 4.1e-195 685.3 457 79.4
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.8e-194 681.0 469 77.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.8e-194 681.0 469 77.6
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.7e-193 679.9 473 77.2
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.7e-193 679.9 473 77.2
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.1e-191 672.9 463 77.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 3.6e-191 672.2 466 76.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 1.4e-190 670.2 466 76.6
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 4.0e-190 668.7 471 75.8
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 5.4e-187 658.3 472 75.8
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 5.4e-187 658.3 472 75.8
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 5.4e-187 658.3 472 75.8
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 5.4e-187 658.3 472 75.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 4.6e-186 655.2 465 75.3
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.0e-185 654.1 467 75.4
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 5.1e-185 651.7 467 74.9
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 8.7e-185 651.0 476 75.2
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 1.1e-184 650.6 471 75.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 7.3e-184 647.9 472 75.4
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.6e-183 645.6 538 67.7
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 2.5e-176 622.9 452 74.8
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-174 616.7 461 73.3
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.2e-170 604.0 463 72.8
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.2e-170 604.0 463 72.8
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.2e-170 604.0 463 72.8
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.2e-170 604.0 463 72.8
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.2e-170 604.0 463 72.8
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.2e-170 604.0 463 72.8
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 4.3e-168 595.5 383 81.7
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.8e-166 590.1 462 71.0
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.3e-166 588.6 451 71.4
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 2.2e-164 583.2 461 70.1
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 4.6e-162 575.5 383 79.6
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.1e-159 566.6 357 81.2
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.1e-158 562.8 456 68.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 5.3e-142 508.8 315 82.2
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 5.9e-141 505.4 462 64.3
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 3.9e-137 492.7 318 79.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.4e-136 489.2 361 72.9
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 7.0e-126 455.3 403 64.8
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.8e-119 432.6 271 81.9
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.7e-117 426.8 290 77.2
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 4.2e-115 419.5 346 68.5
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 9.5e-115 418.3 286 75.5
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.8e-112 408.3 420 57.9
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.3e-111 407.9 271 77.9
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.3e-111 405.2 285 74.0
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 2.7e-109 400.2 306 70.3
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.0e-108 398.3 257 80.2
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 8.6e-108 395.2 255 80.8
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 8.6e-108 395.2 255 80.8
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-103 380.9 243 80.2
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 9.5e-99 365.2 439 52.6
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 6.2e-98 362.5 276 71.7
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 6.2e-98 362.5 276 71.7
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.2e-96 358.2 276 71.7
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 5.8e-96 355.9 276 71.0
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 5.8e-96 355.9 276 71.0
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.3e-95 354.8 276 70.7
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 3.9e-92 343.2 266 67.3
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 6.6e-92 342.4 239 77.0
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.6e-90 337.8 249 70.3
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 7.5e-88 328.9 194 85.6
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-87 327.8 294 65.3
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 3.7e-87 326.6 208 80.8
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 9.2e-86 322.0 191 85.3
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 9.2e-86 322.0 191 85.3
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 3.5e-85 320.1 191 84.8
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.3e-83 313.2 366 53.3
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 5.6e-83 312.8 380 51.8
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 4.7e-82 309.7 183 85.8
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.0e-81 306.6 183 85.2
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 7.6e-80 302.4 171 87.1
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 4.1e-78 296.6 175 84.0
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 7.3e-75 285.8 175 81.7
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 9.6e-75 285.4 195 77.9
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.4e-73 281.6 353 50.4
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 2.4e-73 280.8 264 58.3
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 9.0e-73 278.9 353 50.1
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.0e-72 277.7 175 79.4
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.3e-71 275.0 263 57.8
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.4e-71 272.3 227 65.2
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 4.2e-70 270.0 264 56.4
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 3.9e-68 263.5 202 71.8
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.3e-66 258.5 144 86.1
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.6e-66 258.1 190 73.7
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 3.1e-65 253.8 360 49.4
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 2.2e-63 247.7 181 75.1
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 9.3e-62 242.3 163 76.7
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 5.1e-60 236.5 171 72.5
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 5.1e-60 236.5 171 72.5
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-59 235.3 242 55.4
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.4e-55 219.5 167 69.5
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.4e-55 219.2 125 88.8
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 5.5e-54 216.5 123 89.4
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.6e-53 213.4 220 56.8
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 7.9e-53 212.6 197 64.5
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.3e-52 211.8 171 69.0
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 1.5e-51 208.4 112 90.2
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-49 202.2 156 71.8
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 6.9e-49 199.5 146 75.3
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 4.5e-48 196.8 112 90.2
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.8e-48 196.4 303 46.2
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.2e-47 194.5 123 84.6
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 3.5e-45 187.2 163 66.9
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 8.7e-44 182.6 249 43.8
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.5e-43 181.8 122 77.9
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.2e-42 177.9 123 75.6
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 2.2e-42 177.9 116 81.9
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-41 175.6 134 72.4
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 3.1e-41 174.1 220 52.3
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 6.5e-39 166.4 122 74.6
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.5e-38 164.5 130 66.9
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.9e-37 159.5 120 71.7
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 5.1e-36 156.8 91 86.8
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 2.2e-34 151.4 91 87.9
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.8e-31 140.6 152 56.6
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 6.5e-31 139.8 138 58.0
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.5e-31 139.8 116 65.5
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 2.7e-29 134.4 77 79.2
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 1.1e-27 129.0 121 62.8
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-27 128.6 86 73.3
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 4.4e-27 127.1 66 92.4
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 1.7e-26 125.2 128 55.5
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 1.4e-25 122.1 65 87.7
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.9e-22 111.7 63 84.1
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.2e-22 110.9 92 67.4
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 3.6e-21 107.5 110 57.3
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 3.6e-21 107.5 110 57.3
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.8e-18 97.8 90 62.2
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 1.8e-17 95.1 57 73.7
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 9.1e-17 92.8 146 40.4
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.5e-16 90.5 115 46.1
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 5.9e-16 90.1 46 91.3
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.7e-16 89.7 58 72.4
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.2e-15 88.2 52 76.9
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.5e-14 85.5 84 54.8
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 4.2e-14 84.0 65 69.2
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 5.7e-11 73.6 52 69.2
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 9.7e-11 72.8 91 47.3
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 1.3e-10 72.4 58 70.7
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 8.2e-10 69.7 49 61.2
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 1.8e-09 68.6 45 60.0
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-09 68.2 40 85.0
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.1e-09 67.8 135 36.3
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 4.1e-09 67.4 63 52.4
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 5.3e-09 67.0 56 64.3
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 9.1e-09 66.2 58 67.2
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.1e-09 66.2 37 78.4
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.1e-09 66.2 40 85.0
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.0e-08 65.1 38 92.1
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-07 62.4 47 70.2
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 2.2e-07 61.6 34 79.4
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.1e-06 59.3 53 60.4


User provided reference genes

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