Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.8e-138 495.4 261 100.0
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.1e-90 336.3 211 84.4
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 3.1e-89 332.4 211 83.9
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 2.0e-88 329.7 211 83.4
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 3.5e-85 318.9 211 79.1
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 7.9e-77 291.2 205 75.6
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.0e-71 274.2 201 71.1
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.5e-70 269.6 210 68.6
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 3.3e-67 259.2 212 66.5
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 7.4e-67 258.1 213 66.7
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 6.3e-66 255.0 212 63.2
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.4e-65 253.1 211 63.0
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.4e-65 253.1 211 63.0
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 4.5e-64 248.8 210 61.9
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 5.9e-64 248.4 211 61.1
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 7.7e-64 248.1 211 61.1
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 2.9e-63 246.1 209 61.7
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.1e-62 244.2 211 59.7
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.5e-62 243.8 210 60.0
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 7.2e-62 241.5 216 59.3
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 6.7e-60 235.0 214 59.3
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 6.7e-60 235.0 209 60.8
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.6e-59 233.0 213 58.7
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 3.3e-59 232.6 210 59.5
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.2e-58 229.9 201 63.2
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 3.7e-58 229.2 210 57.6
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.4e-57 227.3 213 58.7
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 7.0e-57 224.9 211 56.9
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.6e-56 223.8 208 59.1
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.0e-56 223.4 211 55.0
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 3.5e-56 222.6 212 55.2
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 2.2e-55 219.9 214 55.1
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 6.5e-55 218.4 219 54.8
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 9.4e-54 214.5 211 54.5
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 1.6e-53 213.8 210 55.7
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.6e-53 213.8 208 55.3
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.6e-53 212.6 211 54.5
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 1.4e-52 210.7 212 55.2
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.4e-52 210.7 213 54.0
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 1.8e-52 210.3 211 54.5
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.3e-52 209.9 210 55.7
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 3.0e-52 209.5 213 53.5
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.0e-52 209.1 211 54.5
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 5.2e-52 208.8 211 54.5
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.2e-51 207.6 213 55.4
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 2.0e-51 206.8 211 52.6
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.0e-51 206.8 212 54.2
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.6e-51 206.5 211 54.5
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.4e-51 206.1 211 53.6
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 3.4e-51 206.1 214 51.9
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 7.5e-51 204.9 213 54.0
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 7.5e-51 204.9 214 54.7
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 7.5e-51 204.9 213 54.0
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.3e-50 204.1 212 54.2
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.2e-50 203.4 207 55.1
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 2.8e-50 203.0 211 53.1
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 4.8e-50 202.2 210 51.9
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 6.3e-50 201.8 205 53.2
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.3e-50 201.4 212 53.3
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.1e-49 201.1 215 54.0
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 1.8e-49 200.3 211 53.1
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 2.4e-49 199.9 211 53.1
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.4e-49 199.9 217 51.6
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 2.4e-49 199.9 211 53.6
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.4e-49 198.7 215 53.5
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 1.6e-48 197.2 211 52.6
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.6e-48 197.2 209 53.6
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.3e-47 194.1 211 52.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 2.2e-47 193.4 208 51.0
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 2.2e-47 193.4 208 51.9
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 2.9e-47 193.0 215 49.3
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 2.9e-47 193.0 213 52.1
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 5.0e-47 192.2 206 53.4
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 6.5e-47 191.8 219 52.1
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 3.2e-46 189.5 214 48.1
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 7.2e-46 188.3 210 49.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 9.4e-46 188.0 211 51.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.7e-45 186.4 215 52.1
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 4.7e-45 185.7 210 50.5
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 4.7e-45 185.7 214 50.5
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 8.0e-45 184.9 213 51.2
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.0e-44 184.5 209 51.7
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 1.4e-44 184.1 215 48.4
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 2.3e-44 183.3 202 53.0
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 2.3e-44 183.3 209 49.3
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 6.8e-44 181.8 201 49.8
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 8.8e-44 181.4 212 48.1
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 8.8e-44 181.4 215 48.4
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.2e-43 181.0 222 47.3
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.2e-43 181.0 174 55.7
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 2.6e-43 179.9 215 46.5
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 2.6e-43 179.9 215 45.6
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 3.4e-43 179.5 212 48.1
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 3.4e-43 179.5 229 43.7
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 4.4e-43 179.1 200 50.0
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 4.4e-43 179.1 207 48.8
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 5.7e-43 178.7 202 51.0
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.7e-42 177.2 211 47.9
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 2.8e-42 176.4 211 48.8
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 2.8e-42 176.4 209 51.2
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 4.9e-42 175.6 196 52.6
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 4.9e-42 175.6 196 52.6
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.1e-41 174.5 198 49.0
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 1.4e-41 174.1 196 52.6
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 1.8e-41 173.7 196 52.6
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 3.1e-41 172.9 207 48.8
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 3.1e-41 172.9 212 46.2
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 4.1e-41 172.6 208 51.4
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 4.1e-41 172.6 212 47.2
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 9.2e-41 171.4 211 47.4
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 2.0e-40 170.2 198 49.0
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 2.0e-40 170.2 138 63.8
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 2.0e-40 170.2 212 47.2
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 2.0e-40 170.2 211 46.9
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 3.5e-40 169.5 229 42.4
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 4.5e-40 169.1 214 44.9
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 1.0e-39 167.9 204 47.1
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.3e-39 166.8 218 46.3
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 8.6e-39 164.9 193 49.7
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.9e-38 163.7 214 45.3
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 3.3e-38 162.9 214 45.3
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 4.3e-38 162.5 212 46.2
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 7.3e-38 161.8 217 45.2
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 9.5e-38 161.4 196 48.5
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 2.8e-37 159.8 212 44.3
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.0e-36 157.9 222 44.1
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.0e-36 157.9 208 44.7
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 3.0e-36 156.4 207 45.9
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 2.0e-35 153.7 210 42.9
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 4.4e-35 152.5 216 43.1
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 9.8e-35 151.4 215 45.6
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.2e-34 150.2 210 43.3
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 2.9e-34 149.8 185 46.5
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.4e-33 146.7 209 43.5
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.2e-32 144.4 193 45.6
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.3e-31 141.0 209 41.6
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 3.9e-31 139.4 162 47.5
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.1e-30 137.9 207 44.0
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 3.3e-30 136.3 143 53.1
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 5.6e-30 135.6 215 39.5
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 9.5e-30 134.8 186 43.5
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.6e-29 134.0 214 39.7
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 8.0e-29 131.7 138 49.3
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.4e-28 131.0 218 39.4
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 3.5e-24 116.3 204 35.8
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.0e-23 114.8 217 35.9
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.9e-22 110.5 122 49.2
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 3.3e-22 109.8 172 39.5
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.3e-22 109.8 137 47.4
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 8.1e-21 105.1 116 50.9
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.8e-20 104.0 136 45.6
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 1.7e-07 60.8 80 43.8
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 1.1e-06 58.2 56 55.4


User provided reference genes

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