Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 4.2e-111 404.8 221 100.0
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.5e-100 369.0 223 90.6
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 3.1e-74 282.3 233 69.5
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 5.0e-72 275.0 211 71.6
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 1.1e-71 273.9 229 65.5
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 1.4e-71 273.5 211 66.8
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 1.9e-71 273.1 229 65.5
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.2e-70 270.4 215 69.8
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 7.7e-65 251.1 183 70.5
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 9.4e-63 244.2 173 69.4
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 1.8e-61 240.0 171 69.0
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 5.2e-61 238.4 179 67.0
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 8.8e-61 237.7 178 69.7
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 5.7e-60 235.0 172 66.9
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.7e-59 233.4 182 65.4
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 4.8e-59 231.9 183 66.1
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 4.8e-59 231.9 190 63.7
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 6.3e-59 231.5 195 64.6
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.4e-58 230.3 184 64.1
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 1.8e-58 229.9 178 65.2
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 3.5e-57 225.7 180 63.3
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 1.3e-56 223.8 173 64.7
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 8.5e-56 221.1 179 62.6
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 1.5e-55 220.3 200 59.0
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.9e-55 219.9 191 62.3
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 5.5e-55 218.4 157 68.8
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 3.6e-54 215.7 178 61.8
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 3.6e-54 215.7 178 61.8
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 8.0e-54 214.5 181 61.9
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 1.4e-53 213.8 174 62.1
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.8e-53 213.4 184 62.5
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 1.8e-53 213.4 188 57.4
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 2.3e-53 213.0 180 62.2
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 3.0e-53 212.6 180 61.7
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 6.8e-53 211.5 181 59.1
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 8.8e-53 211.1 185 60.5
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.5e-52 210.3 178 60.7
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 2.0e-52 209.9 179 61.5
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 4.4e-52 208.8 176 61.9
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 9.8e-52 207.6 185 60.0
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 1.3e-51 207.2 185 60.0
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.3e-51 207.2 180 62.8
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 2.2e-51 206.5 186 58.1
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 2.8e-51 206.1 147 70.7
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 2.8e-51 206.1 181 57.5
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 3.7e-51 205.7 183 61.7
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 1.4e-50 203.8 179 61.5
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 3.1e-50 202.6 179 58.7
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 5.4e-50 201.8 174 58.6
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 5.4e-50 201.8 184 56.0
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 1.6e-49 200.3 191 59.2
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.0e-49 199.9 180 57.2
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.0e-48 197.6 185 58.4
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 1.3e-48 197.2 177 56.5
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 1.3e-48 197.2 200 52.5
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.7e-48 196.8 172 60.5
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 3.8e-48 195.7 182 59.9
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 3.8e-48 195.7 180 57.8
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 5.0e-48 195.3 186 55.4
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 6.5e-48 194.9 180 56.1
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 6.5e-48 194.9 137 70.1
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 8.5e-48 194.5 178 55.6
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 8.5e-48 194.5 176 54.5
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 1.5e-47 193.7 178 52.8
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 5.5e-47 191.8 177 59.3
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 9.5e-47 191.0 230 50.4
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 9.5e-47 191.0 182 57.7
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 1.2e-46 190.7 187 56.1
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.1e-46 189.9 177 58.2
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 2.1e-46 189.9 178 55.6
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 3.0e-45 186.0 190 51.6
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 3.0e-45 186.0 187 57.2
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.0e-45 186.0 184 56.5
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.2e-44 184.1 188 55.3
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.2e-44 184.1 184 52.7
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 2.6e-44 183.0 131 71.0
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 2.6e-44 183.0 205 53.2
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 3.4e-44 182.6 169 54.4
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 4.4e-44 182.2 184 51.1
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.7e-44 181.8 201 51.2
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 7.5e-44 181.4 187 51.3
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 1.3e-43 180.6 190 50.0
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 1.7e-43 180.3 185 49.7
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 1.7e-43 180.3 105 81.0
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.7e-43 180.3 179 52.0
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 1.7e-43 180.3 171 53.8
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 4.9e-43 178.7 188 50.5
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 6.3e-43 178.3 205 52.2
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 6.3e-43 178.3 179 52.5
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 8.3e-43 177.9 191 53.9
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 1.1e-42 177.6 169 52.7
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 5.4e-42 175.3 190 48.9
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 5.4e-42 175.3 198 47.5
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 7.0e-42 174.9 192 50.5
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 7.0e-42 174.9 192 50.5
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 7.0e-42 174.9 192 50.5
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 1.2e-41 174.1 184 52.7
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.6e-41 173.7 192 50.0
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.6e-41 173.7 192 50.0
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 2.7e-41 172.9 179 52.0
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 7.7e-41 171.4 190 48.9
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 7.7e-41 171.4 178 50.0
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 7.7e-41 171.4 180 53.9
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 2.3e-40 169.9 184 50.5
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 1.9e-39 166.8 140 58.6
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 1.2e-38 164.1 167 47.9
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 2.3e-37 159.8 165 50.9
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 3.0e-37 159.5 93 77.4
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 3.0e-37 159.5 180 48.9
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 4.4e-36 155.6 180 47.8
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 5.7e-36 155.2 210 47.1
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 5.7e-36 155.2 105 69.5
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 6.4e-35 151.8 279 39.1
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 2.4e-34 149.8 169 44.4
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 3.0e-32 142.9 177 41.8
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 3.3e-31 139.4 148 54.7
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 1.2e-30 137.5 139 53.2
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 2.1e-30 136.7 155 45.2
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 3.6e-30 136.0 205 40.5
Ca_19707_v3 Cicer arietinum L. HOM05D001544 ORTHO05D005712 1.4e-29 134.0 147 49.0
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.3e-29 133.3 181 45.9
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 2.3e-29 133.3 101 59.4
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 1.2e-28 131.0 181 45.3
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 3.4e-28 129.4 156 47.4
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 3.4e-28 129.4 190 42.6
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.4e-28 129.0 181 44.8
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 7.5e-28 128.3 174 42.5
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 1.7e-27 127.1 191 46.6
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.9e-27 126.3 174 40.8
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 6.4e-27 125.2 92 60.9
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.4e-27 125.2 174 40.8
MBI14_g19731_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 8.3e-27 124.8 177 45.2
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.9e-26 123.6 147 48.3
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 9.2e-26 121.3 172 43.6
TAR381G0232 Trochodendron aralioides HOM05D001544 ORTHO05D005712 1.0e-24 117.9 103 58.3
Sabra07G0013400 Salix brachista HOM05D001544 ORTHO05D005712 8.6e-24 114.8 266 33.8
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 5.6e-23 112.1 173 39.9
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 9.5e-23 111.3 97 52.6
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.6e-22 110.5 186 37.1
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.6e-22 110.5 187 39.6
MBI14_g19737_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 1.8e-21 107.1 77 64.9
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.1e-21 106.3 183 35.5
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 5.2e-21 105.5 97 56.7
Thecc.01G023500 Theobroma cacao HOM05D001544 ORTHO05D005712 6.8e-21 105.1 133 45.9
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 3.4e-20 102.8 103 50.5
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 5.8e-20 102.1 183 35.5
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 9.2e-18 94.7 190 35.3
Zm00001eb319500 Zea mays HOM05D001544 ORTHO05D005712 1.1e-15 87.8 135 40.7
Actinidia23006 Actinidia chinensis HOM05D001544 ORTHO05D005712 4.7e-14 82.4 64 67.2
PSO675G0307 Papaver somniferum HOM05D001544 ORTHO05D005712 1.2e-12 77.8 127 44.9
CBR_g12214 Chara braunii HOM05D068249 ORTHO05D005712 1.4e-10 70.9 244 28.3
HPP92_028379 Vanilla planifolia HOM05D001544 ORTHO05D005712 2.3e-08 63.5 133 31.6
MBI14_g19736_MAGBIO Magnolia biondii HOM05D001544 ORTHO05D005712 5.1e-08 62.4 57 59.6


User provided reference genes

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