Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 0.0e+00 1534.6 837 100.0
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 0.0e+00 1149.0 794 82.5
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-196 690.6 391 90.8
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 8.0e-139 498.8 698 45.3
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 2.3e-138 497.3 716 45.3
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 3.7e-136 490.0 698 44.8
Nitab4.5_0001799g0040 Nicotiana tabacum HOM05D004639 ORTHO05D005201 7.8e-102 375.9 392 66.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 5.3e-82 310.1 657 37.3
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.0e-73 281.6 263 57.0
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 2.6e-73 281.2 623 34.3
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 2.6e-73 281.2 322 49.7
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 1.9e-71 275.0 250 56.8
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.0e-68 265.0 278 52.2
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 7.4e-68 263.1 165 70.9
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.7e-67 261.9 262 54.2
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 2.8e-67 261.2 245 55.1
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 1.5e-65 255.4 385 42.3
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.6e-65 254.6 289 51.6
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.3e-64 252.3 193 64.2
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 2.2e-64 251.5 396 42.9
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 1.9e-63 248.4 245 53.1
PGSC0003DMG400017947 Solanum tuberosum HOM05D004639 ORTHO05D005201 9.4e-63 246.1 369 46.3
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.7e-62 244.6 192 60.4
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.7e-62 244.6 192 60.4
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 3.6e-62 244.2 263 53.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 6.1e-62 243.4 349 46.1
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 7.9e-62 243.0 210 59.0
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 7.9e-62 243.0 310 44.2
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.0e-61 242.7 305 46.6
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.4e-61 242.3 287 46.7
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.8e-61 241.9 240 53.3
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 3.9e-61 240.7 208 60.1
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 3.9e-61 240.7 310 43.9
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 3.9e-61 240.7 247 54.7
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 5.1e-61 240.4 250 51.6
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 5.1e-61 240.4 347 46.1
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 6.7e-61 240.0 197 60.4
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 6.7e-61 240.0 293 48.8
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 8.8e-61 239.6 151 73.5
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 8.8e-61 239.6 151 73.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 1.5e-60 238.8 241 53.9
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 3.3e-60 237.7 246 50.8
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 3.3e-60 237.7 185 61.6
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 4.4e-60 237.3 194 60.8
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 5.7e-60 236.9 175 65.7
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 7.4e-60 236.5 152 72.4
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.3e-59 235.7 269 50.2
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 4.8e-59 233.8 194 60.3
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 6.3e-59 233.4 302 45.7
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 6.3e-59 233.4 302 45.7
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 6.3e-59 233.4 245 49.0
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 8.2e-59 233.0 266 48.9
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 8.2e-59 233.0 266 48.9
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.1e-58 232.6 194 59.8
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.1e-58 232.6 194 59.8
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.4e-58 232.3 387 39.0
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.4e-58 231.5 242 51.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 2.4e-58 231.5 158 62.7
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 3.1e-58 231.1 181 60.8
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.3e-58 230.3 402 40.3
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 2.0e-57 228.4 186 57.0
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 3.5e-57 227.6 469 36.5
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 3.5e-57 227.6 181 60.2
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 7.7e-57 226.5 469 36.5
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 7.7e-57 226.5 159 63.5
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 2.2e-56 224.9 270 48.1
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 6.5e-56 223.4 156 64.7
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.4e-55 222.2 296 43.6
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 3.2e-55 221.1 159 64.2
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 7.2e-55 219.9 327 42.5
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 9.4e-55 219.5 154 66.9
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 2.1e-54 218.4 156 66.0
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 6.1e-54 216.9 233 52.4
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 3.0e-53 214.5 142 64.8
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 3.0e-53 214.5 147 64.6
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.9e-53 214.2 147 64.6
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 5.2e-53 213.8 229 50.2
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.5e-52 212.2 160 60.6
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 2.0e-52 211.8 164 59.8
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.0e-52 211.8 159 61.0
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 3.3e-52 211.1 142 64.1
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.3e-52 211.1 159 61.0
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 3.3e-52 211.1 162 61.7
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 3.3e-52 211.1 162 61.7
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 3.3e-52 211.1 162 61.7
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 3.3e-52 211.1 162 61.7
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 2.8e-51 208.0 378 36.5
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 3.7e-51 207.6 232 47.0
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 4.8e-51 207.2 244 47.5
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 6.3e-51 206.8 316 40.8
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 6.3e-51 206.8 178 56.7
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 6.3e-51 206.8 378 36.5
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 1.8e-50 205.3 166 58.4
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.4e-50 204.9 148 62.2
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 4.1e-50 204.1 267 44.2
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 5.3e-50 203.8 265 45.3
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 7.0e-50 203.4 250 43.6
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 2.2e-48 198.4 385 33.5
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 3.2e-47 194.5 146 61.6
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 4.2e-47 194.1 197 54.8
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.4e-47 193.0 193 48.7
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 4.7e-46 190.7 152 59.9
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 3.0e-45 188.0 165 52.7
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.0e-45 188.0 160 55.6
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 5.2e-45 187.2 147 59.2
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 1.2e-44 186.0 276 43.5
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 5.7e-44 183.7 210 51.0
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.2e-43 181.8 151 56.3
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 9.1e-42 176.4 132 62.1
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-41 175.3 165 53.9
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.3e-40 172.6 276 40.9
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 8.5e-40 169.9 270 41.1
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 5.5e-39 167.2 142 53.5
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 9.4e-39 166.4 144 54.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 1.2e-38 166.0 100 73.0
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.0e-37 162.9 140 52.1
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 2.0e-36 158.7 103 68.0
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 9.8e-36 156.4 152 48.7
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 1.3e-35 156.0 158 48.7
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.7e-35 155.6 95 71.6
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 5.4e-34 150.6 134 47.0
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 9.1e-34 149.8 152 51.3
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 9.1e-34 149.8 152 51.3
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.6e-33 149.1 143 49.7
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 2.3e-32 145.2 211 42.7
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 2.5e-31 141.7 102 55.9
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 1.0e-29 136.3 99 62.6
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 6.8e-29 133.7 97 62.9
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 7.0e-26 123.6 124 52.4
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.7e-25 121.7 99 54.5
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 1.7e-24 119.0 141 40.4
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 5.0e-24 117.5 105 54.3
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 5.0e-24 117.5 80 66.2
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.6e-22 112.5 80 63.8
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.8e-22 111.7 58 79.3
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 6.1e-22 110.5 81 59.3
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-21 109.4 84 64.3
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 2.9e-19 101.7 205 37.1
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 3.2e-18 98.2 147 42.2
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.2e-17 96.3 71 62.0
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 1.7e-16 92.4 86 61.6
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 5.0e-16 90.9 107 51.4
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 1.9e-15 89.0 104 48.1
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.9e-15 89.0 71 57.7
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.8e-14 85.1 94 51.1
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 6.2e-14 84.0 65 60.0
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 4.0e-13 81.3 61 60.7
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 1.6e-09 69.3 65 46.2
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 7.8e-09 67.0 154 37.7
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 1.0e-08 66.6 157 32.5
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 8.6e-08 63.5 39 66.7
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 2.5e-07 62.0 56 53.6
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 7.3e-07 60.5 88 34.1
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 1.6e-06 59.3 39 61.5


User provided reference genes

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