Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 2444.5 1238 100.0
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 2233.4 1169 96.3
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 2087.4 1254 83.9
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1945.6 1263 78.8
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1806.6 1258 74.5
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1749.2 1268 70.9
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1720.7 1252 70.1
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1708.0 1256 70.2
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1703.7 1266 69.4
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1697.2 1253 68.6
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1695.6 1260 68.3
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1693.3 1255 69.3
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1692.2 1256 68.7
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1691.8 1305 67.2
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1686.8 1265 68.6
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1686.4 1252 68.5
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1685.6 1256 69.3
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1685.2 1245 69.6
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1683.3 1260 68.5
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1681.4 1265 68.3
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1681.0 1252 68.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1680.6 1299 67.4
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1680.2 1265 68.3
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1677.9 1257 68.9
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1259 68.3
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1265 67.5
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1673.3 1260 67.4
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1670.2 1264 68.1
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1669.8 1259 67.1
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1668.3 1262 67.1
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1660.6 1260 67.3
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1656.7 1263 67.6
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1655.6 1261 66.8
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1652.1 1261 67.7
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1651.0 1295 66.6
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1649.4 1263 67.5
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1648.3 1249 67.4
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1648.3 1261 66.9
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1646.3 1256 67.0
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1253 66.9
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1261 66.4
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1643.6 1310 65.3
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1642.9 1258 66.0
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1642.9 1256 67.0
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1641.3 1256 66.6
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1640.9 1255 66.3
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1640.2 1265 66.2
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1637.1 1256 66.4
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1634.4 1265 66.4
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1630.2 1268 66.1
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1630.2 1328 64.3
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1627.5 1254 66.3
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1627.1 1328 63.7
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1624.8 1257 66.4
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1620.5 1256 65.7
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1619.0 1263 66.0
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1618.2 1256 65.8
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1616.7 1262 65.1
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1614.7 1258 65.8
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1612.8 1269 65.0
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1610.5 1268 65.3
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1609.0 1263 64.8
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1598.2 1269 65.2
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1597.4 1251 64.5
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1597.0 1260 65.6
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1589.7 1256 65.3
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1580.5 1296 64.5
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1578.9 1258 65.1
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1575.5 1260 65.2
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1575.1 1257 64.6
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1567.4 1256 64.1
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1564.7 1266 63.7
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1562.0 1251 64.6
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1559.3 1183 67.5
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1553.9 1185 66.9
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1551.6 1259 63.8
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1549.6 1259 64.0
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1545.4 1311 61.5
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1533.9 1253 63.4
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1531.2 1253 63.2
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1526.5 1241 64.9
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1524.2 1248 63.2
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1523.5 1249 62.9
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1507.3 1264 62.1
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1502.3 1167 66.2
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1499.2 1257 62.3
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1496.1 1251 62.0
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1490.3 883 84.7
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1463.4 1009 73.3
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1458.7 1187 64.1
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1457.2 1203 63.3
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1405.2 1258 58.9
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1396.7 1264 58.9
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1373.6 1023 67.4
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1367.4 1283 56.8
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1349.0 1264 56.7
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 0.0e+00 1302.0 789 82.8
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 0.0e+00 1281.9 812 80.9
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1241.9 1040 62.6
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1142.1 1252 51.5
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1117.8 1262 48.5
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1092.4 971 58.6
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1086.2 1258 47.0
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 5.4e-309 1064.7 938 61.1
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.1e-298 1030.4 889 60.9
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.0e-291 1007.3 1223 46.3
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 5.6e-290 1001.5 664 75.8
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 4.5e-255 885.6 1199 43.5
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.6e-228 796.2 468 86.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 4.7e-220 769.2 496 80.8
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.2e-209 733.8 539 69.6
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 9.5e-205 718.4 1347 35.8
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 1.1e-200 704.9 675 58.1
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 6.9e-179 632.5 623 54.4
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 9.3e-176 622.1 605 55.0
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 7.4e-173 612.5 1101 38.1
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 9.0e-171 605.5 1261 32.9
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 9.4e-128 462.6 330 68.8
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 4.0e-126 457.2 1189 30.0
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 2.8e-124 451.1 711 42.3
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 3.3e-112 411.0 271 74.9
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.0e-93 348.6 346 53.5
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.9e-91 342.0 239 74.9
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 7.8e-90 336.7 239 73.2
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.9e-81 307.8 267 58.8
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 3.9e-81 307.8 267 58.8
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 3.8e-76 291.2 200 73.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.5e-72 279.3 255 58.4
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.9e-56 225.7 207 58.5
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 4.8e-47 194.5 205 52.2
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.4e-43 183.0 161 58.4
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.0e-41 176.8 161 55.3
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 2.5e-40 172.2 160 56.2
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.3e-40 171.4 104 76.0
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.5e-37 162.9 1307 22.5
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 6.7e-33 147.5 119 67.2
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.9e-28 132.1 118 61.0
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.9e-28 132.1 98 72.4
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 7.9e-26 124.0 120 52.5
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.0e-25 123.6 120 52.5
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 5.0e-20 104.8 132 41.7
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 5.5e-19 101.3 159 40.9
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 3.6e-18 98.6 158 39.9
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 7.5e-16 90.9 123 43.9
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 1.3e-15 90.1 93 48.4
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 4.1e-14 85.1 61 67.2
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 4.5e-13 81.6 53 81.1
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 5.0e-12 78.2 123 38.2
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 7.2e-11 74.3 116 41.4
PGSC0003DMG400046841 Solanum tuberosum HOM05D014102 ORTHO05D022958 9.4e-11 73.9 100 44.0
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 2.7e-10 72.4 256 26.2
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 6.1e-10 71.2 47 70.2
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 2.3e-09 69.3 79 44.3
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 4.0e-09 68.6 157 37.6
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 8.8e-09 67.4 46 67.4
CAN.G494.1 Capsicum annuum HOM05D014102 ORTHO05D016168 1.1e-06 60.5 67 53.7
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 4.1e-06 58.5 94 40.4


User provided reference genes

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