Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.0e-31 139.4 70 100.0
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 1.8e-12 75.5 37 100.0
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 1.8e-12 75.5 37 100.0
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.8e-12 75.5 37 100.0
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.8e-12 75.5 37 100.0
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 3.1e-12 74.7 38 97.4
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 3.1e-12 74.7 38 97.4
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 3.1e-12 74.7 38 97.4
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 3.1e-12 74.7 40 90.0
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 4.1e-12 74.3 38 97.4
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 4.1e-12 74.3 37 97.3
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 5.3e-12 73.9 42 88.1
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.2e-11 72.8 37 94.6
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.2e-11 72.8 37 94.6
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.6e-11 72.4 38 94.7
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 2.0e-11 72.0 37 94.6
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 2.0e-11 72.0 37 94.6
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 2.6e-11 71.6 38 92.1
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 2.6e-11 71.6 37 91.9
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 2.6e-11 71.6 37 91.9
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 3.5e-11 71.2 46 80.4
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 3.5e-11 71.2 37 94.6
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 4.5e-11 70.9 37 91.9
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.5e-11 70.9 37 89.2
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 4.5e-11 70.9 37 91.9
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 7.7e-11 70.1 37 91.9
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 7.7e-11 70.1 38 92.1
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.0e-10 69.7 37 91.9
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.0e-10 69.7 37 91.9
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.0e-10 69.7 40 87.5
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 1.0e-10 69.7 40 87.5
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.2e-10 68.6 37 89.2
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 2.2e-10 68.6 37 89.2
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 2.9e-10 68.2 37 91.9
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 2.9e-10 68.2 37 91.9
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 3.8e-10 67.8 38 86.8
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 3.8e-10 67.8 38 86.8
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 5.0e-10 67.4 37 86.5
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 6.5e-10 67.0 38 84.2
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 6.5e-10 67.0 37 89.2
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 8.5e-10 66.6 37 86.5
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 1.1e-09 66.2 38 84.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 1.5e-09 65.9 43 74.4
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 1.5e-09 65.9 38 81.6
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.5e-09 65.9 38 81.6
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.5e-09 65.9 38 81.6
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 1.5e-09 65.9 38 81.6
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 2.5e-09 65.1 35 88.6
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 2.5e-09 65.1 37 83.8
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.5e-09 65.1 37 83.8
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 2.5e-09 65.1 44 72.7
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.5e-09 65.1 37 81.1
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 4.2e-09 64.3 47 70.2
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 4.2e-09 64.3 37 83.8
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 7.2e-09 63.5 37 83.8
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 9.4e-09 63.2 34 88.2
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 9.4e-09 63.2 36 83.3
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 1.2e-08 62.8 38 76.3
Potri.014G100250 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.2e-08 62.8 45 71.1
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 1.6e-08 62.4 38 76.3
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 1.6e-08 62.4 37 81.1
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 2.1e-08 62.0 35 82.9
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 2.7e-08 61.6 37 78.4
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 3.6e-08 61.2 38 78.9
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 6.1e-08 60.5 39 76.9
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 1.0e-07 59.7 31 93.5
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 1.0e-07 59.7 29 100.0
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 1.4e-07 59.3 39 74.4
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.8e-07 58.9 37 75.7
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 1.8e-07 58.9 37 75.7
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 1.8e-07 58.9 38 71.1
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 1.8e-07 58.9 37 75.7
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 2.3e-07 58.5 43 72.1
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 3.0e-07 58.2 32 87.5
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 3.0e-07 58.2 37 75.7
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 5.2e-07 57.4 37 73.0
FAN10G0450 Fragaria x ananassa HOM05D007283 ORTHO05D013080 1.5e-06 55.8 28 92.9
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 2.0e-06 55.5 37 70.3
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 3.3e-06 54.7 30 80.0
Dinv17635 Davidia involucrata HOM05D000187 ORTHO05D000926 3.3e-06 54.7 30 90.0
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 5.7e-06 53.9 29 86.2
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 7.5e-06 53.5 37 67.6
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 7.5e-06 53.5 32 81.2
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 9.7e-06 53.1 58 53.4
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 9.7e-06 53.1 31 77.4


User provided reference genes

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