Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 0.0e+00 1181.0 629 100.0
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.3e-295 1019.2 633 85.0
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 7.3e-294 1013.4 642 83.3
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 1.8e-292 1008.8 642 82.9
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 1.1e-289 999.6 547 96.3
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.1e-225 786.9 628 69.6
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 9.1e-220 767.3 629 65.7
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 3.5e-219 765.4 632 66.6
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.5e-217 760.0 631 66.2
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.1e-212 743.8 652 63.8
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.2e-208 730.3 649 63.5
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.2e-208 730.3 639 63.8
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 1.2e-208 730.3 639 64.3
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 8.0e-208 727.6 651 63.0
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.4e-207 726.9 630 64.1
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 5.2e-207 724.9 630 64.3
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 3.4e-206 722.2 649 62.7
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.2e-205 719.5 635 62.8
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.3e-205 717.6 599 65.3
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.4e-204 716.8 635 61.9
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 4.1e-204 715.3 634 62.8
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 4.1e-204 715.3 634 62.8
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 2.7e-203 712.6 634 62.1
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.2e-202 709.5 634 61.7
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 2.9e-202 709.1 629 63.4
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 2.9e-202 709.1 642 61.4
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.8e-202 708.8 635 61.9
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 5.5e-201 704.9 635 61.3
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.6e-200 703.4 639 59.9
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.4e-199 700.3 644 62.0
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.0e-198 696.4 642 62.1
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.1e-196 690.6 644 61.3
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 1.4e-196 690.3 642 60.9
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 2.0e-195 686.4 413 87.9
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 3.5e-195 685.6 630 61.4
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 5.9e-195 684.9 651 59.0
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.3e-194 683.7 631 60.7
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 2.3e-194 682.9 632 60.6
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.5e-193 680.2 639 58.2
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.2e-192 677.2 627 60.9
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 4.7e-192 675.2 639 58.1
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.0e-191 674.1 636 60.4
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 3.4e-190 669.1 635 59.8
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 5.7e-190 668.3 642 60.4
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.4e-189 664.8 651 57.1
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 8.3e-189 664.5 651 57.1
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.1e-188 662.1 654 56.7
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.1e-188 662.1 651 57.1
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 7.0e-188 661.4 637 60.1
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.2e-188 661.0 651 57.1
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.3e-186 657.1 635 59.2
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-186 656.8 651 56.7
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-186 656.8 651 56.7
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.5e-185 652.9 628 58.3
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 7.3e-185 651.4 651 56.4
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 7.3e-185 651.4 638 58.0
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 7.5e-182 641.3 640 58.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.3e-181 640.6 641 57.4
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.1e-180 637.5 634 56.3
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.1e-180 637.5 639 56.8
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 4.6e-179 632.1 631 56.1
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 7.8e-179 631.3 628 58.9
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 7.8e-179 631.3 639 56.0
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 6.6e-178 628.2 632 57.0
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.2e-176 624.0 639 55.9
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 4.7e-176 622.1 627 56.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 1.5e-174 617.1 636 55.8
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 3.4e-174 615.9 637 54.9
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 5.8e-174 615.1 634 55.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 7.5e-174 614.8 634 55.0
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 2.2e-173 613.2 638 55.8
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.9e-173 612.1 632 55.2
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.1e-172 610.9 634 56.9
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 4.1e-172 609.0 630 55.6
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 7.1e-172 608.2 634 54.9
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 2.7e-171 606.3 639 54.5
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.5e-169 599.7 638 55.5
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 5.6e-169 598.6 649 54.5
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 7.3e-169 598.2 629 56.0
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 1.1e-167 594.3 641 54.3
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 3.1e-167 592.8 597 57.3
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 5.4e-164 582.0 652 52.1
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.7e-162 577.0 646 52.2
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.5e-161 573.9 628 53.2
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 3.3e-161 572.8 642 51.1
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 5.6e-161 572.0 655 50.7
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 8.1e-160 568.2 637 52.9
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 3.1e-159 566.2 639 51.6
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 5.8e-158 562.0 644 50.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 9.9e-158 561.2 652 50.3
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 2.4e-151 540.0 622 51.6
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 5.3e-151 538.9 625 52.3
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 6.9e-151 538.5 590 53.6
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 9.9e-150 534.6 626 51.8
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 1.7e-149 533.9 641 48.8
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.0e-146 524.6 430 66.5
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 2.5e-145 520.0 625 49.0
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 1.8e-143 513.8 645 47.8
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.2e-142 511.1 430 65.8
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 6.4e-141 505.4 581 52.0
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 2.4e-140 503.4 624 49.4
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 2.3e-138 496.9 655 48.2
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 3.1e-135 486.5 666 44.1
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 9.0e-135 485.0 664 45.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.0e-134 483.8 426 64.1
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 4.1e-127 459.5 634 46.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 3.4e-126 456.4 633 45.3
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.5e-125 452.2 633 44.9
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 2.1e-123 447.2 502 52.6
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.7e-123 446.8 674 42.3
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 4.3e-121 439.5 638 44.7
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 6.1e-115 419.1 402 58.2
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 1.1e-113 414.8 339 67.8
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.4e-108 397.9 626 42.8
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.9e-108 397.5 628 41.9
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 2.7e-107 393.7 628 41.4
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.6e-107 393.3 631 41.5
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 5.2e-106 389.4 632 41.9
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 6.7e-106 389.0 626 41.7
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 9.7e-105 385.2 629 41.3
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 1.8e-103 380.9 330 64.2
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-102 376.7 637 40.0
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 6.5e-93 345.9 608 40.0
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 1.5e-92 344.7 405 50.1
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 2.0e-86 324.3 609 38.4
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 2.3e-85 320.9 397 48.9
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.8e-79 301.2 605 38.2
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.1e-79 300.1 605 37.7
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-77 294.7 605 36.9
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 2.5e-76 290.8 596 37.8
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 8.9e-74 282.3 661 32.8
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-64 251.9 554 35.0
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 8.1e-59 232.6 544 34.9
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 4.7e-51 206.8 169 67.5
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.2e-49 202.2 316 43.7
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 5.4e-47 193.4 671 29.1
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.2e-46 192.2 118 84.7
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.3e-45 188.7 301 44.2
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 1.5e-44 185.3 119 80.7
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 5.6e-44 183.3 191 58.1
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 1.1e-36 159.1 119 73.1
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.9e-36 158.3 97 84.5
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 6.2e-35 153.3 155 53.5
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 7.6e-33 146.4 94 79.8
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 2.9e-32 144.4 116 66.4
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-31 142.1 371 34.0
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-28 132.5 106 64.2
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.8e-27 127.9 87 72.4
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 4.8e-27 127.1 158 51.9
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 7.6e-25 119.8 86 66.3
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.7e-24 118.6 71 78.9
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 2.2e-24 118.2 134 53.7
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-23 115.5 90 63.3
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 1.9e-23 115.2 131 54.2
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 2.7e-22 111.3 339 27.1
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 7.9e-22 109.8 185 39.5
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-21 109.4 90 61.1
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.9e-20 105.1 109 55.0
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 3.3e-20 104.4 76 69.7
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 1.5e-17 95.5 89 55.1
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 6.5e-16 90.1 223 34.5
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 5.5e-15 87.0 223 34.1
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 5.5e-15 87.0 223 34.1
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 2.7e-14 84.7 144 45.8
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 3.9e-13 80.9 51 74.5
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 6.3e-11 73.6 99 41.4
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-10 72.0 80 51.2
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-09 68.9 61 54.1
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 7.7e-09 66.6 69 52.2
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.0e-08 66.2 84 44.0
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 5.0e-08 63.9 65 52.3
Hund00190 Selenicereus undatus HOM05D001997 ORTHO05D004620 2.7e-06 58.2 117 35.9
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 7.9e-06 56.6 86 41.9


User provided reference genes

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