Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010629g0030 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.6e-88 330.1 266 100.0
Nitab4.5_0000456g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 4.7e-77 292.0 266 88.7
Nitab4.5_0004323g0040 Nicotiana tabacum HOM05D001765 ORTHO05D005876 1.4e-76 290.4 266 89.8
Nitab4.5_0000276g0120 Nicotiana tabacum HOM05D001765 ORTHO05D005876 2.4e-76 289.7 266 88.0
Peaxi162Scf00065g00002 Petunia axillaris HOM05D001765 ORTHO05D005876 3.8e-74 282.3 195 89.7
CAN.G874.72 Capsicum annuum HOM05D001765 ORTHO05D005876 1.3e-71 273.9 197 88.8
Solyc01g060030.3 Solanum lycopersicum HOM05D001765 ORTHO05D005876 2.3e-71 273.1 196 86.7
Sopen01g026230 Solanum pennellii HOM05D001765 ORTHO05D005876 2.3e-71 273.1 196 86.2
Cc03_g00980 Coffea canephora HOM05D001765 ORTHO05D005876 5.1e-71 271.9 271 87.1
Lj6P689T37 Lonicera japonica HOM05D001765 ORTHO05D005876 1.3e-66 257.3 197 83.8
Dinv44303 Davidia involucrata HOM05D001765 ORTHO05D005876 1.1e-65 254.2 153 86.9
Actinidia40362 Actinidia chinensis HOM05D001765 ORTHO05D005876 4.2e-65 252.3 196 76.0
CSS0034555 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 2.7e-64 249.6 267 75.7
unitig_749.g13366 Utricularia gibba HOM05D001765 ORTHO05D005876 3.0e-63 246.1 148 86.5
CiPaw.02G075900 Carya illinoinensis HOM05D001765 ORTHO05D005876 3.9e-63 245.7 194 83.5
Oeu001465.1 Olea europaea HOM05D001765 ORTHO05D005876 1.1e-62 244.2 149 85.2
Rhsim04G0234200 Rhododendron simsii HOM05D001765 ORTHO05D005876 1.1e-62 244.2 269 78.1
MSTRG.21776 Avicennia marina HOM05D001765 ORTHO05D005876 1.5e-62 243.8 151 85.4
Oeu063485.1 Olea europaea HOM05D001765 ORTHO05D005876 3.3e-62 242.7 190 81.1
CSS0002630 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D005876 5.6e-62 241.9 181 79.6
vmacro08062 Vaccinium macrocarpon HOM05D001765 ORTHO05D005876 5.6e-62 241.9 270 75.6
CDE12G0657 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 9.6e-62 241.1 149 85.9
Hma1.2p1_0013F.1_g008730 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 9.6e-62 241.1 198 79.3
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 3.6e-61 239.2 191 82.2
ECA246G2338 Erigeron canadensis HOM05D001765 ORTHO05D005876 1.4e-60 237.3 150 85.3
Hma1.2p1_0078F.1_g040010 Hydrangea macrophylla HOM05D001765 ORTHO05D005876 1.4e-60 237.3 146 84.2
TAR633G2429 Trochodendron aralioides HOM05D001765 ORTHO05D005876 1.4e-60 237.3 196 74.5
FvH4_4g19461 Fragaria vesca HOM05D001765 ORTHO05D005876 1.8e-60 236.9 196 77.6
Haze_01276 Corylus avellana HOM05D001765 ORTHO05D005876 2.4e-60 236.5 188 83.0
HanXRQChr05g0145931 Helianthus annuus HOM05D001765 ORTHO05D005876 2.4e-60 236.5 151 83.4
TWI09G0718 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 2.4e-60 236.5 190 74.7
DCAR_002506 Daucus carota HOM05D001765 ORTHO05D005876 3.1e-60 236.1 150 84.0
Prupe.1G122100 Prunus persica HOM05D001765 ORTHO05D005876 6.9e-60 235.0 194 75.3
TAR365G0409 Trochodendron aralioides HOM05D001765 ORTHO05D005876 6.9e-60 235.0 196 76.5
SGA_v2.0_scaffold119G32663 Striga asiatica HOM05D001765 ORTHO05D005876 9.0e-60 234.6 150 85.3
FAN07G0091 Fragaria x ananassa HOM05D001765 ORTHO05D005876 1.2e-59 234.2 196 78.6
MD13G1156300 Malus domestica HOM05D001765 ORTHO05D005876 1.2e-59 234.2 194 76.8
TWI73G0761 Tripterygium wilfordii HOM05D001765 ORTHO05D005876 1.2e-59 234.2 190 81.1
Lsat_1_v5_gn_6_116901 Lactuca sativa HOM05D001765 ORTHO05D005876 1.5e-59 233.8 150 82.0
Migut.N00048 Erythranthe guttata HOM05D001765 ORTHO05D005876 2.0e-59 233.4 150 83.3
QL06p011625 Quercus lobata HOM05D001765 ORTHO05D005876 2.6e-59 233.0 148 84.5
MBI19_g07244_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 4.5e-59 232.3 202 72.8
Atru.chr4.3029 Acer truncatum HOM05D001765 ORTHO05D005876 5.8e-59 231.9 195 74.4
CiPaw.01G139800 Carya illinoinensis HOM05D001765 ORTHO05D005876 5.8e-59 231.9 191 70.2
MD16G1157200 Malus domestica HOM05D001765 ORTHO05D005876 5.8e-59 231.9 187 71.7
Prupe.1G073200 Prunus persica HOM05D001765 ORTHO05D005876 7.6e-59 231.5 196 75.5
Thecc.04G297600 Theobroma cacao HOM05D001765 ORTHO05D005876 7.6e-59 231.5 190 82.1
Nn4g25612 Nelumbo nucifera HOM05D001765 ORTHO05D005876 9.9e-59 231.1 148 83.8
Duzib052G0074 Durio zibethinus HOM05D001765 ORTHO05D005876 2.9e-58 229.6 193 79.3
Nn3g21679 Nelumbo nucifera HOM05D001765 ORTHO05D005876 3.8e-58 229.2 151 81.5
Cpa.g.sc9.87 Carica papaya HOM05D001765 ORTHO05D005876 4.9e-58 228.8 193 68.9
Ciclev10005673m.g Citrus clementina HOM05D001765 ORTHO05D005876 6.4e-58 228.4 150 81.3
PGR031G3587 Punica granatum HOM05D001765 ORTHO05D005876 1.1e-57 227.6 147 81.0
Sabra10G0110100 Salix brachista HOM05D001765 ORTHO05D005876 1.9e-57 226.9 192 80.7
ATR0706G059 Amborella trichopoda HOM05D001765 ORTHO05D005876 3.2e-57 226.1 144 83.3
Gohir.A10G171300 Gossypium hirsutum HOM05D001765 ORTHO05D005876 4.2e-57 225.7 193 77.7
Aqoxy1G02157 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 7.1e-57 224.9 150 80.0
Gohir.A09G065500 Gossypium hirsutum HOM05D001765 ORTHO05D005876 9.3e-57 224.6 150 80.7
Gorai.006G079200 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.2e-56 224.2 150 80.7
Gorai.011G199400 Gossypium raimondii HOM05D001765 ORTHO05D005876 1.2e-56 224.2 193 81.3
Potri.010G142400 Populus trichocarpa HOM05D001765 ORTHO05D005876 1.2e-56 224.2 190 77.4
Gohir.D09G064400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 1.6e-56 223.8 149 79.2
Eucgr.A00351 Eucalyptus grandis HOM05D001765 ORTHO05D005876 2.1e-56 223.4 149 78.5
Aqoxy5G01535 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 2.7e-56 223.0 150 80.0
CANSAT78G1829 Cannabis sativa HOM05D001765 ORTHO05D005876 2.7e-56 223.0 149 81.2
Sc13g0006420 Simmondsia chinensis HOM05D001765 ORTHO05D005876 2.7e-56 223.0 150 82.7
Ca_21450_v3 Cicer arietinum L. HOM05D001765 ORTHO05D005876 4.6e-56 222.2 196 66.8
Gohir.D10G178400 Gossypium hirsutum HOM05D001765 ORTHO05D005876 3.0e-55 219.5 193 80.8
SEGI_21194 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.0e-55 219.5 144 81.2
SEGI_31674 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 3.0e-55 219.5 144 81.2
Potri.008G107100 Populus trichocarpa HOM05D001765 ORTHO05D005876 3.9e-55 219.2 190 78.4
COL.COLO4_11257 Corchorus olitorius HOM05D001765 ORTHO05D005876 5.1e-55 218.8 194 67.5
Duzib151G0385 Durio zibethinus HOM05D001765 ORTHO05D005876 6.7e-55 218.4 149 79.9
Sabra08G0081000 Salix brachista HOM05D001765 ORTHO05D005876 6.7e-55 218.4 148 78.4
AUR62037504 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.1e-54 217.6 149 81.2
ClCG06G004640 Citrullus lanatus HOM05D001765 ORTHO05D005876 1.1e-54 217.6 149 79.2
Glyma.07G241300 Glycine max HOM05D001765 ORTHO05D005876 1.1e-54 217.6 151 78.1
COL.COLO4_34649 Corchorus olitorius HOM05D001765 ORTHO05D005123 1.5e-54 217.2 196 67.3
Manes.03G202700 Manihot esculenta HOM05D001765 ORTHO05D005876 1.5e-54 217.2 149 77.2
PSO210G5285 Papaver somniferum HOM05D001765 ORTHO05D005876 1.5e-54 217.2 150 77.3
Glyma.17G032500 Glycine max HOM05D001765 ORTHO05D005876 1.9e-54 216.9 151 77.5
Ah.04g162900 Amaranthus hybridus HOM05D001765 ORTHO05D005876 2.5e-54 216.5 149 80.5
Lalb_Chr13g0298421 Lupinus albus HOM05D001765 ORTHO05D005876 2.5e-54 216.5 152 77.0
VMungo1215G2482 Vigna mungo HOM05D001765 ORTHO05D005876 2.5e-54 216.5 142 81.7
Sed0022335 Sechium edule HOM05D001765 ORTHO05D005876 3.3e-54 216.1 145 80.7
CDE01G0626 Ceratophyllum demersum HOM05D001765 ORTHO05D005876 5.6e-54 215.3 148 78.4
THA.LOC104802705 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 7.4e-54 214.9 152 77.0
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 7.4e-54 214.9 143 79.7
EL10Ac4g08905 Beta vulgaris HOM05D001765 ORTHO05D005876 2.1e-53 213.4 149 78.5
THA.LOC104818892 Tarenaya hassleriana HOM05D001765 ORTHO05D005876 2.1e-53 213.4 154 76.6
TPR.G16856 Trifolium pratense HOM05D001765 ORTHO05D005876 3.7e-53 212.6 142 79.6
PSO761G0153 Papaver somniferum HOM05D001765 ORTHO05D005876 4.8e-53 212.2 150 75.3
Lalb_Chr07g0182091 Lupinus albus HOM05D001765 ORTHO05D005876 6.2e-53 211.8 142 78.9
Phvul.003G112500 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 8.1e-53 211.5 197 76.1
Aqoxy5G02976 Aquilegia oxysepala HOM05D001765 ORTHO05D005876 3.1e-52 209.5 150 76.7
Phvul.008G245800 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.3e-52 208.8 145 77.9
Phvul.009G074533 Phaseolus vulgaris HOM05D001765 ORTHO05D005876 5.3e-52 208.8 145 77.9
Carub.0008s0928 Capsella rubella HOM05D001765 ORTHO05D005876 2.6e-51 206.5 150 76.7
Zm00001eb328920 Zea mays HOM05D001765 ORTHO05D005876 2.6e-51 206.5 139 80.6
A06p38370 Brassica napus HOM05D001765 ORTHO05D005876 3.4e-51 206.1 153 75.8
BraA06t26751Z Brassica rapa HOM05D001765 ORTHO05D005876 3.4e-51 206.1 153 75.8
Aa31LG11G7990 Aethionema arabicum HOM05D001765 ORTHO05D005876 4.5e-51 205.7 183 74.3
AT5G49400 Arabidopsis thaliana HOM05D001765 ORTHO05D005876 4.5e-51 205.7 150 76.7
Nitab4.5_0004323g0070 Nicotiana tabacum HOM05D001765 ORTHO05D005876 4.5e-51 205.7 116 95.7
RcHm_v2.0_Chr4g0424571 Rosa chinensis HOM05D001765 ORTHO05D005876 4.5e-51 205.7 132 86.4
arahy.Tifrunner.gnm1.ann1.03CYAA Arachis hypogaea HOM05D001765 ORTHO05D005876 5.8e-51 205.3 134 81.3
Zm00001eb109890 Zea mays HOM05D001765 ORTHO05D005876 5.8e-51 205.3 138 77.5
Ciclev10016311m.g Citrus clementina HOM05D001765 ORTHO05D005876 9.9e-51 204.5 133 83.5
AUR62004747 Chenopodium quinoa HOM05D001765 ORTHO05D005876 1.7e-50 203.8 138 83.3
CsaV3_2G015100 Cucumis sativus L. HOM05D001765 ORTHO05D005876 1.7e-50 203.8 134 84.3
BolC7t44518H Brassica oleracea HOM05D001765 ORTHO05D005876 2.2e-50 203.4 150 76.0
MELO3C023334.2 Cucumis melo HOM05D001765 ORTHO05D005876 2.2e-50 203.4 133 84.2
BcaC06g30699 Brassica carinata HOM05D001765 ORTHO05D005876 4.9e-50 202.2 150 76.0
AL8G23110 Arabidopsis lyrata HOM05D001765 ORTHO05D005876 8.4e-50 201.4 150 76.0
BcaNung02601 Brassica carinata HOM05D001765 ORTHO05D005876 1.1e-49 201.1 150 75.3
C07p39890 Brassica napus HOM05D001765 ORTHO05D005876 1.1e-49 201.1 150 75.3
Thhalv10004753m.g Eutrema salsugineum HOM05D001765 ORTHO05D005876 1.1e-49 201.1 137 80.3
Sp2g19740 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.4e-49 200.7 150 74.7
SpUn0021_0110 Schrenkiella parvula HOM05D001765 ORTHO05D005876 1.4e-49 200.7 150 74.7
CARHR182130 Cardamine hirsuta HOM05D001765 ORTHO05D005876 5.5e-49 198.7 157 73.2
Psat4g024600 Pisum sativum HOM05D001765 ORTHO05D005876 2.7e-48 196.4 135 78.5
Lj4g0023600 Lotus japonicus HOM05D001765 ORTHO05D005876 6.0e-48 195.3 197 71.6
Sed0021764 Sechium edule HOM05D001765 ORTHO05D005876 6.0e-48 195.3 132 81.8
Os11g0199600 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D005876 7.9e-48 194.9 141 75.9
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 1.0e-47 194.5 150 73.3
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.0e-47 194.5 150 73.3
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.0e-47 194.5 150 73.3
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 3.0e-47 193.0 141 75.9
Mapoly0023s0038 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.5e-46 190.7 141 75.2
Pp3c14_13970 Physcomitrium patens HOM05D001765 ORTHO05D005876 4.3e-46 189.1 138 75.4
AagrBONN_evm.TU.Sc2ySwM_362.810 Anthoceros agrestis HOM05D001765 ORTHO05D005876 3.1e-44 183.0 136 74.3
BraA02t08788Z Brassica rapa HOM05D001765 ORTHO05D005876 9.0e-44 181.4 138 74.6
Manes.15G005450 Manihot esculenta HOM05D001765 ORTHO05D005876 2.9e-42 176.4 127 70.9
Mapoly0171s0012 Marchantia polymorpha HOM05D001765 ORTHO05D005876 1.4e-41 174.1 136 68.4
BcaB07g34154 Brassica carinata HOM05D001765 ORTHO05D005876 4.2e-41 172.6 154 67.5
Pp3c14_17690 Physcomitrium patens HOM05D001765 ORTHO05D005876 2.5e-38 163.3 135 65.2
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.4e-36 157.5 121 74.4
CAN.G201.7 Capsicum annuum HOM05D001765 ORTHO05D005876 3.1e-36 156.4 196 62.8
MBI19_g17409_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D005876 5.0e-34 149.1 202 57.9
CBR_g53494 Chara braunii HOM05D000188 ORTHO05D005876 7.2e-33 145.2 136 62.5
SMO340G0272 Selaginella moellendorffii HOM05D001765 ORTHO05D005876 3.6e-32 142.9 125 63.2
Zm00001eb091100 Zea mays HOM05D001765 ORTHO05D005876 1.4e-31 141.0 118 64.4
Zm00001eb276930 Zea mays HOM05D001765 ORTHO05D005876 4.3e-30 136.0 99 72.7
Lsat_1_v5_gn_6_18261 Lactuca sativa HOM05D001765 ORTHO05D005876 5.0e-26 122.5 137 54.0
GSVIVG01035017001 Vitis vinifera HOM05D001765 ORTHO05D005876 6.5e-26 122.1 86 83.7
SEGI_08255 Sequoiadendron giganteum HOM05D001765 ORTHO05D005876 1.4e-25 120.9 112 60.7
ATR1159G054 Amborella trichopoda HOM05D001765 ORTHO05D005876 9.4e-25 118.2 79 69.6
HanXRQChr13g0395311 Helianthus annuus HOM05D001765 ORTHO05D005876 1.4e-23 114.4 139 49.6
ECA233G0063 Erigeron canadensis HOM05D001765 ORTHO05D005876 5.1e-23 112.5 99 64.6
CAN.G197.3 Capsicum annuum HOM05D001765 ORTHO05D005876 2.8e-21 106.7 75 78.7
Zm00001eb408400 Zea mays HOM05D001765 ORTHO05D005876 2.0e-19 100.5 83 68.7
Medtr1g032030 Medicago truncatula HOM05D001765 ORTHO05D005876 3.8e-18 96.3 69 78.3
Medtr1g032370 Medicago truncatula HOM05D001765 ORTHO05D005876 3.8e-18 96.3 69 78.3
ATR1159G066 Amborella trichopoda HOM05D001765 ORTHO05D005876 4.4e-14 82.8 64 81.2
ATR1159G071 Amborella trichopoda HOM05D001765 ORTHO05D005876 2.8e-13 80.1 66 78.8
Dinv15195 Davidia involucrata HOM05D002174 ORTHO05D005447 6.5e-10 68.9 42 81.0
Cre12.g529200 Chlamydomonas reinhardtii HOM05D001765 ORTHO05D005876 1.5e-06 57.8 40 57.5


User provided reference genes

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