Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 2.8e-294 1014.6 547 100.0
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.1e-256 889.8 591 84.9
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.9e-221 772.7 596 75.5
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 7.2e-221 770.8 598 75.3
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 1.6e-212 743.0 597 72.9
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 4.1e-192 675.2 475 77.7
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 3.5e-175 619.0 455 75.8
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 3.9e-134 482.6 623 50.2
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.8e-129 466.1 607 52.7
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 4.9e-129 465.7 607 53.0
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 6.4e-129 465.3 593 50.6
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 9.6e-125 451.4 491 56.6
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 4.8e-124 449.1 623 49.3
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.5e-122 444.1 683 46.7
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 4.8e-116 422.5 624 48.1
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.4e-115 421.0 483 54.5
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 1.0e-113 414.8 647 47.4
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 4.9e-113 412.5 477 52.8
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 1.9e-112 410.6 649 48.2
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 4.2e-112 409.5 632 48.7
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 2.7e-111 406.8 648 47.1
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 5.1e-110 402.5 647 47.6
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.5e-109 401.0 647 47.8
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 2.1e-108 397.1 587 49.1
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 2.4e-107 393.7 623 46.2
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.2e-106 391.3 660 45.0
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.5e-106 391.0 628 45.9
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.5e-106 391.0 621 46.4
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.9e-106 389.0 622 46.0
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.3e-105 387.9 627 46.3
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 1.7e-105 387.5 628 47.3
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 2.2e-105 387.1 575 49.6
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 3.8e-105 386.3 627 47.7
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 5.0e-105 386.0 630 45.9
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 8.5e-105 385.2 619 47.3
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.5e-104 383.6 642 46.6
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 4.2e-104 382.9 619 48.0
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 7.2e-104 382.1 614 46.7
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.6e-103 379.8 642 44.7
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 1.0e-102 378.3 607 47.8
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 2.3e-102 377.1 640 45.9
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 6.7e-102 375.6 569 48.0
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 8.7e-102 375.2 593 46.9
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 2.0e-98 364.0 596 43.5
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.6e-98 363.6 691 45.0
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.0e-97 359.4 659 44.3
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 5.0e-97 359.4 649 45.3
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 6.5e-97 359.0 673 43.7
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 8.5e-97 358.6 531 45.8
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 8.5e-97 358.6 614 44.8
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 1.4e-96 357.8 619 42.0
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 5.5e-96 355.9 503 49.9
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 1.6e-95 354.4 569 47.3
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 4.6e-95 352.8 470 49.1
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 6.1e-95 352.4 601 42.1
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 2.3e-94 350.5 507 47.9
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 5.1e-94 349.4 642 44.2
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 7.4e-93 345.5 619 43.8
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.3e-92 344.7 602 45.5
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 1.3e-92 344.7 587 42.6
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 4.8e-92 342.8 626 42.3
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 6.3e-92 342.4 497 49.5
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.4e-91 341.3 609 43.2
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.1e-91 340.1 550 45.6
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.3e-89 334.7 493 47.7
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 6.5e-89 332.4 491 47.0
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.5e-88 330.5 633 44.4
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 2.1e-87 327.4 460 49.8
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.0e-86 325.1 585 41.4
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 8.8e-86 322.0 498 46.2
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 8.8e-86 322.0 479 47.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.1e-85 321.6 667 42.0
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 1.5e-85 321.2 471 47.3
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.0e-85 320.9 359 55.2
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 3.3e-85 320.1 490 47.1
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 3.7e-84 316.6 501 44.3
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 8.2e-84 315.5 464 47.6
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 8.2e-84 315.5 653 37.4
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 1.4e-83 314.7 538 43.5
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 1.4e-83 314.7 538 43.5
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 4.1e-83 313.2 639 39.3
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 4.1e-83 313.2 558 41.4
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 4.5e-82 309.7 463 47.1
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 4.5e-82 309.7 463 47.1
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.0e-81 308.5 482 46.7
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.0e-81 308.5 482 46.7
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.7e-81 307.8 482 46.3
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 5.0e-81 306.2 607 39.5
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 5.0e-81 306.2 349 55.3
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.6e-79 301.2 513 42.1
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.7e-79 299.7 490 44.7
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 1.5e-77 294.7 520 42.5
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 1.6e-74 284.6 533 41.8
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 1.6e-66 258.1 379 47.2
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 2.7e-66 257.3 419 48.7
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.1e-64 251.9 398 48.5
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.5e-64 251.5 397 48.6
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.3e-60 238.4 292 47.9
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 2.9e-52 210.7 615 33.0
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 2.9e-52 210.7 254 50.4
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.7e-49 201.4 295 45.1
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 7.3e-48 196.1 619 31.2
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 9.5e-48 195.7 243 50.2
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.6e-47 194.9 372 50.0
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 2.2e-44 184.5 247 48.2
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.0e-41 175.6 327 37.6
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.4e-35 155.2 221 44.3
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 3.5e-34 150.6 239 47.3
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 1.3e-33 148.7 363 38.6
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.9e-32 144.8 205 49.8
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.6e-31 141.7 350 34.0
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.4e-30 137.9 178 47.2
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.7e-25 121.7 139 51.8
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 3.0e-25 120.9 123 53.7
Peaxi162Scf00991g00335 Petunia axillaris HOM05D006007 ORTHO05D007518 2.6e-21 107.8 124 66.9
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.9e-20 104.4 251 34.3
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 5.4e-19 100.1 176 39.2
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 2.7e-18 97.8 158 39.2
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 6.6e-17 93.2 158 38.6
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 1.5e-13 82.0 65 63.1
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 2.0e-13 81.6 183 34.4
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 3.8e-12 77.4 234 32.9
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 6.0e-10 70.1 372 24.2
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 5.1e-09 67.0 168 39.3
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 8.7e-09 66.2 81 48.1
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.5e-08 65.5 67 53.7
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.5e-08 65.5 139 39.6


User provided reference genes

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