Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.8e-190 669.1 333 100.0
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.5e-184 649.4 331 96.4
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 5.6e-176 620.9 333 91.6
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 3.6e-175 618.2 333 91.6
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.7e-169 599.4 333 89.2
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.3e-145 520.0 329 73.6
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 2.5e-144 515.8 324 76.2
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.8e-143 512.3 333 72.4
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 8.1e-143 510.8 327 72.5
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.0e-141 506.1 331 70.1
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 1.7e-140 503.1 333 72.7
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 4.9e-140 501.5 349 68.2
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 2.4e-139 499.2 326 72.1
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 5.4e-139 498.0 324 74.4
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 1.2e-138 496.9 333 70.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.6e-138 496.5 329 69.6
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 3.5e-138 495.4 333 69.7
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.5e-136 490.0 331 69.8
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 4.3e-136 488.4 333 68.2
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 5.6e-136 488.0 327 70.3
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.1e-134 483.8 330 68.2
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.5e-133 479.9 366 63.4
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 2.0e-133 479.6 327 70.6
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 3.8e-132 475.3 333 68.2
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 8.4e-132 474.2 330 67.0
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 8.4e-132 474.2 332 67.5
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 1.4e-131 473.4 330 67.3
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 3.2e-131 472.2 302 72.8
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 4.2e-131 471.9 323 67.8
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 4.2e-131 471.9 258 92.6
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 5.5e-131 471.5 330 67.0
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.5e-131 471.5 332 67.5
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 5.5e-131 471.5 332 68.1
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 7.1e-131 471.1 332 66.9
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.6e-130 469.9 330 66.7
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 1.6e-130 469.9 332 67.2
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.7e-130 469.2 330 66.1
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 2.7e-130 469.2 332 66.0
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 3.5e-130 468.8 330 66.7
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 7.9e-130 467.6 330 66.1
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.0e-129 467.2 323 67.5
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.3e-129 466.8 332 66.9
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.8e-129 466.5 330 66.7
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 2.3e-129 466.1 330 66.7
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 5.1e-129 464.9 330 66.4
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 5.1e-129 464.9 330 65.5
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 5.1e-129 464.9 330 66.4
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.1e-129 464.9 331 68.3
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 6.7e-129 464.5 323 67.2
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 8.7e-129 464.2 330 66.4
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 8.7e-129 464.2 337 65.3
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.5e-128 462.6 295 81.4
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 4.3e-128 461.8 325 66.8
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 9.6e-128 460.7 333 64.6
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.3e-127 460.3 330 65.2
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.3e-127 460.3 330 64.2
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.1e-127 459.5 327 65.4
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 3.7e-127 458.8 321 66.0
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 4.8e-127 458.4 333 65.5
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 6.2e-127 458.0 327 64.8
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 8.2e-127 457.6 330 64.5
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.4e-126 456.8 384 60.4
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.8e-126 456.4 327 64.5
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 5.3e-126 454.9 333 63.7
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 5.3e-126 454.9 327 66.4
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 9.0e-126 454.1 363 59.5
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.2e-125 453.8 333 63.7
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 1.5e-125 453.4 321 66.0
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 4.5e-125 451.8 333 64.0
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 5.8e-125 451.4 317 68.5
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 5.8e-125 451.4 328 65.2
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 5.8e-125 451.4 363 59.5
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 7.6e-125 451.1 327 65.4
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 1.3e-124 450.3 380 59.7
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.3e-124 450.3 321 67.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 6.5e-124 448.0 326 64.7
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 8.4e-124 447.6 330 63.6
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.4e-123 446.8 347 64.8
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.2e-122 443.7 327 64.5
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.2e-122 443.7 347 64.3
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 2.1e-122 443.0 330 64.8
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 6.0e-122 441.4 327 64.2
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 6.3e-119 431.4 327 64.5
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.2e-117 427.2 293 67.2
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 3.8e-116 422.2 326 64.4
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 5.0e-116 421.8 355 58.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 2.5e-115 419.5 331 61.9
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 2.1e-114 416.4 322 62.1
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 2.3e-113 412.9 333 62.5
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 8.8e-113 411.0 326 61.7
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.3e-111 407.1 326 62.9
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 1.8e-110 403.3 292 68.5
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 9.1e-110 401.0 323 61.0
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.5e-109 400.2 330 58.5
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.4e-105 387.1 333 57.7
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 5.7e-104 381.7 252 69.0
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.4e-102 377.1 279 65.6
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 7.2e-99 364.8 325 56.6
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 2.1e-98 363.2 245 73.5
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 5.7e-96 355.1 236 71.2
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 1.6e-93 347.1 264 64.0
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 2.6e-93 346.3 328 54.0
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 1.4e-89 334.0 335 52.5
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.2e-82 310.8 182 75.8
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 9.8e-80 301.2 330 48.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 3.1e-78 296.2 188 71.8
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.0e-77 293.5 228 61.0
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 2.7e-77 293.1 228 62.3
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 1.6e-74 283.9 329 45.3
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 6.1e-74 282.0 165 78.2
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 2.3e-73 280.0 331 44.4
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.1e-70 271.2 330 43.3
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.8e-70 270.4 329 43.8
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.1e-67 261.2 332 45.2
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 5.4e-54 215.7 170 61.8
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.1e-52 209.1 156 62.2
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.5e-51 206.8 169 63.3
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 3.6e-50 203.0 123 69.9
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.6e-42 177.6 200 55.5
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 3.1e-41 173.3 367 32.2
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 2.9e-39 166.8 192 43.2
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 2.7e-37 160.2 350 31.7
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 3.5e-37 159.8 315 35.2
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 2.3e-36 157.1 154 50.6
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.6e-34 149.8 144 54.2
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 4.4e-32 142.9 245 39.6
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.4e-30 137.1 120 57.5
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.6e-29 134.4 353 30.6
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.5e-19 101.3 78 61.5
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 4.0e-17 93.2 60 75.0
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.7e-15 87.8 77 50.6
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 2.5e-14 84.0 65 63.1
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 9.6e-11 72.0 60 55.0
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 1.6e-10 71.2 67 44.8
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 5.8e-08 62.8 66 45.5
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 1.1e-06 58.5 85 38.8


User provided reference genes

Program Settings