Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 0.0e+00 1544.3 793 100.0
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 0.0e+00 1192.2 756 83.6
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.9e-275 952.6 752 68.1
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 5.6e-275 951.0 753 68.3
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 7.1e-270 934.1 752 68.0
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 7.3e-259 897.5 761 64.7
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 9.9e-256 887.1 759 64.2
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 6.4e-247 857.8 756 61.5
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 1.0e-244 850.5 756 61.0
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.8e-244 849.7 537 84.0
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 3.8e-231 805.4 769 58.9
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.0e-173 611.7 370 84.1
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 1.3e-167 594.3 765 46.5
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 2.5e-158 563.5 776 45.9
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 6.2e-157 558.9 771 45.4
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 8.1e-157 558.5 781 46.0
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 8.1e-157 558.5 781 46.0
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 1.1e-156 558.1 772 45.5
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 2.0e-155 553.9 784 45.7
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 2.8e-149 533.5 796 42.2
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 9.0e-148 528.5 772 43.9
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 3.4e-147 526.6 772 44.7
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.1e-142 511.5 777 43.9
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 3.3e-142 510.0 770 43.5
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 5.6e-142 509.2 774 41.7
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 7.3e-142 508.8 774 41.1
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 1.6e-141 507.7 767 42.2
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 2.6e-139 500.4 770 43.8
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 8.4e-138 495.4 783 41.3
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.4e-137 494.6 771 40.7
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 9.3e-137 491.9 781 42.0
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 2.7e-136 490.3 775 40.5
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 2.7e-136 490.3 777 40.7
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 2.7e-136 490.3 781 42.0
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.1e-133 480.7 781 41.7
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 2.8e-133 480.3 788 40.1
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 3.7e-133 479.9 770 40.4
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 6.2e-133 479.2 742 41.2
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 2.4e-132 477.2 795 41.4
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.9e-132 475.7 787 41.6
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.7e-130 471.1 772 40.7
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 3.8e-130 469.9 793 39.0
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 2.1e-128 464.2 793 40.1
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.7e-128 463.8 596 46.6
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 2.7e-128 463.8 778 39.5
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 1.1e-124 451.8 785 40.1
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 3.4e-123 446.8 703 40.8
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 7.6e-123 445.7 779 38.3
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 5.0e-122 443.0 785 38.0
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 6.5e-122 442.6 769 38.9
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 5.5e-121 439.5 792 38.6
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 7.1e-121 439.1 782 38.7
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 7.1e-121 439.1 762 41.7
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-120 437.6 780 40.3
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 2.1e-120 437.6 794 40.4
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 7.9e-120 435.6 655 42.1
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 3.0e-119 433.7 775 39.1
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 8.7e-119 432.2 782 39.3
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 4.3e-118 429.9 783 36.4
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 1.6e-117 427.9 799 37.9
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 4.8e-117 426.4 782 39.3
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 8.2e-117 425.6 753 38.4
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 1.4e-116 424.9 794 37.2
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.8e-116 424.5 771 37.4
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 4.5e-115 419.9 799 38.2
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 1.0e-114 418.7 797 37.8
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.6e-112 411.4 785 37.8
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 4.6e-112 409.8 769 34.9
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 3.0e-111 407.1 754 38.6
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 1.5e-110 404.8 765 38.4
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 1.5e-110 404.8 767 37.2
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 1.3e-109 401.7 678 39.2
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 1.7e-109 401.4 620 41.8
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 2.0e-107 394.4 747 37.6
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.4e-107 393.7 772 36.0
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.5e-105 387.5 662 39.4
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 4.7e-104 383.3 784 37.6
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 7.9e-104 382.5 784 37.6
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.4e-103 381.7 779 37.5
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 1.4e-103 381.7 783 37.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 1.7e-101 374.8 777 36.6
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 4.8e-101 373.2 765 37.0
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 1.4e-100 371.7 776 37.0
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 1.4e-100 371.7 702 37.5
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.1e-100 370.5 747 37.1
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 3.1e-100 370.5 709 36.2
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 4.1e-100 370.2 654 37.5
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 2.2e-98 364.4 787 35.6
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 3.8e-98 363.6 722 37.0
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.1e-97 362.1 701 37.1
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 1.9e-97 361.3 787 34.7
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 9.4e-97 359.0 767 34.8
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.6e-96 358.2 671 36.1
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 8.0e-96 355.9 777 35.4
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 2.2e-90 337.8 693 36.4
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 5.7e-86 323.2 202 76.7
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 1.7e-85 321.6 587 37.1
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 3.8e-82 310.5 511 40.5
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 5.7e-78 296.6 738 31.8
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 7.5e-78 296.2 532 37.0
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 4.9e-77 293.5 491 39.1
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 8.3e-77 292.7 734 32.6
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 3.1e-76 290.8 716 32.0
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 7.0e-76 289.7 808 31.6
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.3e-73 279.6 759 30.3
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 6.1e-72 276.6 553 36.9
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 8.0e-72 276.2 809 30.8
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 5.2e-71 273.5 693 31.2
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 8.3e-69 266.2 513 34.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 3.2e-68 264.2 620 33.7
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 9.2e-68 262.7 564 36.3
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 7.8e-67 259.6 663 31.7
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 1.0e-66 259.2 402 41.0
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.1e-65 255.8 546 35.0
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 1.9e-65 255.0 724 30.2
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 3.6e-64 250.8 506 36.4
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 4.0e-63 247.3 407 39.1
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.2e-62 245.7 736 31.0
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.6e-62 244.6 464 36.0
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 2.6e-62 244.6 742 30.9
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.7e-61 241.9 757 30.3
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 4.4e-54 217.2 386 37.0
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 1.0e-50 206.1 458 33.4
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 6.2e-40 170.2 425 32.5
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 3.4e-38 164.5 374 31.6
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 9.9e-38 162.9 238 47.9
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-35 156.0 246 37.8
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 3.5e-35 154.5 212 40.6
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 6.0e-35 153.7 192 47.9
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.5e-33 148.3 472 30.7
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 2.8e-32 144.8 250 36.4
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 3.6e-32 144.4 249 36.9
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 6.9e-31 140.2 306 33.3
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 9.9e-30 136.3 378 32.3
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 3.8e-29 134.4 231 42.0
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.8e-29 134.4 223 41.3
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 4.9e-29 134.0 286 36.0
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.1e-28 132.9 168 42.9
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 7.1e-28 130.2 514 28.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 2.1e-27 128.6 245 39.2
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 1.7e-26 125.6 141 49.6
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.1e-23 116.3 692 25.0
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.8e-22 110.5 346 31.2
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 7.6e-22 110.2 306 29.4
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 2.3e-18 98.6 395 26.1
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 3.0e-18 98.2 101 51.5
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.9e-17 95.5 82 53.7
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 4.8e-16 90.9 249 31.3
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.1e-15 89.7 81 50.6
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 1.4e-15 89.4 122 42.6
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 1.0e-13 83.2 123 39.0
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 1.0e-13 83.2 109 43.1
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 2.2e-13 82.0 102 46.1
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.4e-12 79.3 87 49.4
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 2.7e-11 75.1 62 51.6
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 1.3e-10 72.8 152 34.9
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 1.8e-10 72.4 162 34.0
Nitab4.5_0002206g0060 Nicotiana tabacum HOM05D000805 ORTHO05D000624 3.9e-10 71.2 35 100.0
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 8.7e-10 70.1 83 45.8
CAN.G62.16 Capsicum annuum HOM05D000805 ORTHO05D000624 3.3e-09 68.2 35 94.3
Solyc06g060840.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 4.3e-09 67.8 35 91.4
Sopen06g020990 Solanum pennellii HOM05D000805 ORTHO05D000624 4.3e-09 67.8 35 91.4
PGSC0003DMG400024152 Solanum tuberosum HOM05D000805 ORTHO05D000624 7.4e-09 67.0 35 91.4
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.8e-07 62.4 137 31.4
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 5.3e-07 60.8 75 40.0
SGA_v2.0_scaffold104G30202 Striga asiatica HOM05D000805 ORTHO05D000624 6.9e-07 60.5 35 80.0
Peaxi162Scf00102g00813 Petunia axillaris HOM05D000805 ORTHO05D000624 1.2e-06 59.7 35 77.1
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 1.2e-06 59.7 149 28.9
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.0e-06 58.9 68 51.5
Oeu006820.1 Olea europaea HOM05D000805 ORTHO05D000624 2.6e-06 58.5 35 80.0
Oeu006822.1 Olea europaea HOM05D000805 ORTHO05D000624 2.6e-06 58.5 35 80.0
Nitab4.5_0009301g0010 Nicotiana tabacum HOM05D000805 ORTHO05D000624 3.4e-06 58.2 35 77.1
Peaxi162Scf00260g00056 Petunia axillaris HOM05D000805 ORTHO05D000624 3.4e-06 58.2 35 77.1
HanXRQChr17g0549281 Helianthus annuus HOM05D000805 ORTHO05D000624 1.0e-05 56.6 35 77.1


User provided reference genes

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