Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010571g0030 Nicotiana tabacum HOM05D000919 ORTHO05D285713 2.9e-79 298.5 150 100.0
Solyc07g065130.3 Solanum lycopersicum HOM05D000919 ORTHO05D001187 4.8e-10 68.6 97 46.4
Sopen07g033350 Solanum pennellii HOM05D000919 ORTHO05D001187 4.8e-10 68.6 97 46.4
PGSC0003DMG401022195 Solanum tuberosum HOM05D000919 ORTHO05D001187 4.8e-10 68.6 97 46.4
CAN.G337.41 Capsicum annuum HOM05D000919 ORTHO05D001187 1.1e-09 67.4 97 45.4
Nitab4.5_0004362g0010 Nicotiana tabacum HOM05D000919 ORTHO05D001187 1.1e-09 67.4 94 48.9
Peaxi162Scf00285g00933 Petunia axillaris HOM05D000919 ORTHO05D001187 1.1e-09 67.4 100 46.0
Nitab4.5_0001160g0190 Nicotiana tabacum HOM05D000919 ORTHO05D001187 5.3e-09 65.1 94 47.9
Prupe.4G008800 Prunus persica HOM05D000919 ORTHO05D001187 5.3e-09 65.1 109 41.3
DCAR_004906 Daucus carota HOM05D000919 ORTHO05D001187 9.1e-09 64.3 100 43.0
Gohir.A10G008800 Gossypium hirsutum HOM05D000919 ORTHO05D001187 2.0e-08 63.2 110 40.0
Gorai.011G009300 Gossypium raimondii HOM05D000919 ORTHO05D001187 2.0e-08 63.2 110 40.0
Gohir.D10G008500 Gossypium hirsutum HOM05D000919 ORTHO05D001187 2.6e-08 62.8 110 40.0
DCAR_027814 Daucus carota HOM05D000919 ORTHO05D001187 3.4e-08 62.4 97 41.2
Dinv10297 Davidia involucrata HOM05D000919 ORTHO05D001187 3.4e-08 62.4 100 42.0
MD05G1359100 Malus domestica HOM05D000919 ORTHO05D001187 3.4e-08 62.4 97 42.3
MD10G1334800 Malus domestica HOM05D000919 ORTHO05D001187 3.4e-08 62.4 97 42.3
TAR627G0643 Trochodendron aralioides HOM05D000919 ORTHO05D001187 3.4e-08 62.4 97 42.3
CSS0007707 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 5.9e-08 61.6 97 43.3
Duzib160G0201 Durio zibethinus HOM05D000919 ORTHO05D001187 5.9e-08 61.6 97 42.3
COL.COLO4_31900 Corchorus olitorius HOM05D000919 ORTHO05D001187 7.7e-08 61.2 97 41.2
FvH4_3g00790 Fragaria vesca HOM05D000919 ORTHO05D001187 7.7e-08 61.2 97 42.3
FAN21G0953 Fragaria x ananassa HOM05D000919 ORTHO05D001187 7.7e-08 61.2 97 42.3
RcHm_v2.0_Chr5g0001041 Rosa chinensis HOM05D000919 ORTHO05D001187 7.7e-08 61.2 97 42.3
CSS0016248 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 1.0e-07 60.8 95 43.2
CSS0020272 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 1.0e-07 60.8 95 43.2
AUR62040677 Chenopodium quinoa HOM05D000919 ORTHO05D001187 1.0e-07 60.8 97 42.3
Cc09_g00780 Coffea canephora HOM05D000919 ORTHO05D001187 1.0e-07 60.8 95 42.1
Thecc.06G234800 Theobroma cacao HOM05D000919 ORTHO05D001187 1.0e-07 60.8 97 41.2
CSS0037637 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 1.3e-07 60.5 97 43.3
Cc05_g14520 Coffea canephora HOM05D000919 ORTHO05D001187 1.3e-07 60.5 100 40.0
Manes.08G069730 Manihot esculenta HOM05D000919 ORTHO05D001187 1.3e-07 60.5 97 41.2
SalBow8G0650 Salvia bowleyana HOM05D000919 ORTHO05D001187 1.3e-07 60.5 97 41.2
CANSAT56G3054 Cannabis sativa HOM05D000919 ORTHO05D001187 1.7e-07 60.1 104 42.3
Cpa.g.sc75.102 Carica papaya HOM05D000919 ORTHO05D001187 1.7e-07 60.1 97 42.3
Duzib235G0451 Durio zibethinus HOM05D000919 ORTHO05D001187 1.7e-07 60.1 97 41.2
Hma1.2p1_0036F.1_g022870 Hydrangea macrophylla HOM05D000919 ORTHO05D001187 1.7e-07 60.1 100 40.0
Nitab4.5_0003626g0110 Nicotiana tabacum HOM05D000919 ORTHO05D001187 1.7e-07 60.1 97 41.2
Aqoxy1G04035 Aquilegia oxysepala HOM05D000919 ORTHO05D001187 2.2e-07 59.7 106 42.5
EL10Ac4g07631 Beta vulgaris HOM05D000919 ORTHO05D001187 2.2e-07 59.7 105 41.0
MBI19_g06158_MAGBIO Magnolia biondii HOM05D000919 ORTHO05D001187 2.2e-07 59.7 97 42.3
PSO541G2781 Papaver somniferum HOM05D000919 ORTHO05D001187 2.2e-07 59.7 97 44.3
Potri.010G155400 Populus trichocarpa HOM05D000919 ORTHO05D001187 2.2e-07 59.7 100 40.0
Potri.016G011100 Populus trichocarpa HOM05D000919 ORTHO05D001187 2.2e-07 59.7 100 40.0
Solyc05g054130.4 Solanum lycopersicum HOM05D000919 ORTHO05D001187 2.2e-07 59.7 97 41.2
Sopen05g032620 Solanum pennellii HOM05D000919 ORTHO05D001187 2.2e-07 59.7 97 41.2
VMungo0540G0204 Vigna mungo HOM05D000919 ORTHO05D001187 2.2e-07 59.7 95 42.1
Actinidia11889 Actinidia chinensis HOM05D000919 ORTHO05D001187 2.9e-07 59.3 95 42.1
PSO675G1844 Papaver somniferum HOM05D000919 ORTHO05D001187 2.9e-07 59.3 97 41.2
TAR629G0864 Trochodendron aralioides HOM05D000919 ORTHO05D001187 2.9e-07 59.3 94 44.7
ATR0712G048 Amborella trichopoda HOM05D000919 ORTHO05D001187 3.8e-07 58.9 94 44.7
CAN.G449.21 Capsicum annuum HOM05D000919 ORTHO05D001187 3.8e-07 58.9 100 40.0
Phvul.006G142500 Phaseolus vulgaris HOM05D000919 ORTHO05D001187 3.8e-07 58.9 95 41.1
Sed0012657 Sechium edule HOM05D000919 ORTHO05D001187 3.8e-07 58.9 96 41.7
TWI63G1802 Tripterygium wilfordii HOM05D000919 ORTHO05D001187 3.8e-07 58.9 100 40.0
Zm00001eb325830 Zea mays HOM05D000919 ORTHO05D001187 3.8e-07 58.9 100 40.0
Glyma.15G115400 Glycine max HOM05D000919 ORTHO05D001187 5.0e-07 58.5 95 41.1
Gohir.A05G174900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 5.0e-07 58.5 97 40.2
Gohir.D05G177900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 5.0e-07 58.5 97 40.2
Gorai.009G183300 Gossypium raimondii HOM05D000919 ORTHO05D001187 5.0e-07 58.5 97 40.2
Os07g0585100 Oryza sativa ssp. japonica HOM05D000919 ORTHO05D001187 5.0e-07 58.5 100 40.0
Peaxi162Scf01165g00217 Petunia axillaris HOM05D000919 ORTHO05D001187 5.0e-07 58.5 100 40.0
Potri.019G057100 Populus trichocarpa HOM05D000919 ORTHO05D001187 5.0e-07 58.5 109 38.5
Sed0007328 Sechium edule HOM05D000919 ORTHO05D001187 5.0e-07 58.5 96 40.6
PGSC0003DMG400008459 Solanum tuberosum HOM05D000919 ORTHO05D001187 5.0e-07 58.5 97 39.2
GSVIVG01030034001 Vitis vinifera HOM05D000919 ORTHO05D001187 5.0e-07 58.5 96 41.7
Actinidia10763 Actinidia chinensis HOM05D000919 ORTHO05D001187 6.5e-07 58.2 97 41.2
Migut.M01690 Erythranthe guttata HOM05D000919 ORTHO05D001187 6.5e-07 58.2 100 38.0
Lj1C1241T3 Lonicera japonica HOM05D000919 ORTHO05D001187 6.5e-07 58.2 97 39.2
Nitab4.5_0000143g0130 Nicotiana tabacum HOM05D000919 ORTHO05D001187 6.5e-07 58.2 97 40.2
Rhsim04G0015600 Rhododendron simsii HOM05D000919 ORTHO05D001187 6.5e-07 58.2 97 40.2
Solyc11g012400.2 Solanum lycopersicum HOM05D000919 ORTHO05D001187 6.5e-07 58.2 97 39.2
Sopen11g007150 Solanum pennellii HOM05D000919 ORTHO05D001187 6.5e-07 58.2 97 39.2
PGSC0003DMG401013284 Solanum tuberosum HOM05D000919 ORTHO05D001187 6.5e-07 58.2 97 39.2
Gohir.A06G154200 Gossypium hirsutum HOM05D000919 ORTHO05D001187 8.5e-07 57.8 97 40.2
Gohir.D06G160900 Gossypium hirsutum HOM05D000919 ORTHO05D001187 8.5e-07 57.8 97 40.2
Medtr2g026050 Medicago truncatula HOM05D000919 ORTHO05D001187 8.5e-07 57.8 95 40.0
CSS0037254 Camellia sinensis var. sinensis HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 39.2
Cfa000087 Carpinus fangiana HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 41.2
Ca_00731_v3 Cicer arietinum L. HOM05D000919 ORTHO05D001187 1.1e-06 57.4 95 40.0
Ca_21012_v3 Cicer arietinum L. HOM05D000919 ORTHO05D001187 1.1e-06 57.4 100 40.0
Ca_21019_v3 Cicer arietinum L. HOM05D000919 ORTHO05D001187 1.1e-06 57.4 100 40.0
Ciclev10015837m.g Citrus clementina HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 39.2
ECA203G0002 Erigeron canadensis HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 40.2
ECA234G2161 Erigeron canadensis HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 40.2
Glyma.09G011000 Glycine max HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 39.2
Gohir.D08G059600 Gossypium hirsutum HOM05D000919 ORTHO05D001187 1.1e-06 57.4 96 38.5
Gorai.004G061500 Gossypium raimondii HOM05D000919 ORTHO05D001187 1.1e-06 57.4 96 38.5
HanXRQChr05g0129091 Helianthus annuus HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 40.2
Lalb_Chr18g0057051 Lupinus albus HOM05D000919 ORTHO05D001187 1.1e-06 57.4 96 39.6
Lalb_Chr20g0119311 Lupinus albus HOM05D000919 ORTHO05D001187 1.1e-06 57.4 95 40.0
PSO210G6147 Papaver somniferum HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 42.3
PSO302G0199 Papaver somniferum HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 42.3
Hund23167 Selenicereus undatus HOM05D000919 ORTHO05D001187 1.1e-06 57.4 97 39.2
MSTRG.7158 Avicennia marina HOM05D000919 ORTHO05D001187 1.4e-06 57.0 97 40.2
ClCG01G010420 Citrullus lanatus HOM05D000919 ORTHO05D001187 1.4e-06 57.0 96 39.6
MELO3C025555.2 Cucumis melo HOM05D000919 ORTHO05D001187 1.4e-06 57.0 96 39.6
CsaV3_1G017130 Cucumis sativus L. HOM05D000919 ORTHO05D001187 1.4e-06 57.0 96 39.6
Dinv05847 Davidia involucrata HOM05D000919 ORTHO05D001187 1.4e-06 57.0 109 38.5
Lj2C260T12 Lonicera japonica HOM05D000919 ORTHO05D001187 1.4e-06 57.0 97 39.2
Peaxi162Scf00610g00126 Petunia axillaris HOM05D000919 ORTHO05D001187 1.4e-06 57.0 97 39.2
Potri.014G162100 Populus trichocarpa HOM05D000919 ORTHO05D001187 1.4e-06 57.0 97 39.2
Rhsim02G0100800 Rhododendron simsii HOM05D000919 ORTHO05D001187 1.4e-06 57.0 106 39.6
SGA_v2.0_scaffold171G38898 Striga asiatica HOM05D000919 ORTHO05D001187 1.4e-06 57.0 95 38.9
Cpa.g.sc395.5 Carica papaya HOM05D000919 ORTHO05D001187 1.9e-06 56.6 108 37.0
CiPaw.10G078700 Carya illinoinensis HOM05D000919 ORTHO05D001187 1.9e-06 56.6 97 38.1
Cc09_g00750 Coffea canephora HOM05D000919 ORTHO05D001187 1.9e-06 56.6 91 44.0
BcaC06g34242 Brassica carinata HOM05D000919 ORTHO05D001187 2.5e-06 56.2 100 40.0
C07p31190 Brassica napus HOM05D000919 ORTHO05D001187 2.5e-06 56.2 100 40.0
BolC7t43660H Brassica oleracea HOM05D000919 ORTHO05D001187 2.5e-06 56.2 100 40.0
Carub.0007s2412 Capsella rubella HOM05D000919 ORTHO05D001187 2.5e-06 56.2 95 43.2
CAN.G696.23 Capsicum annuum HOM05D000919 ORTHO05D001187 2.5e-06 56.2 97 38.1
Glyma.17G008100 Glycine max HOM05D000919 ORTHO05D001187 2.5e-06 56.2 95 40.0
Gohir.A08G049500 Gossypium hirsutum HOM05D000919 ORTHO05D001187 2.5e-06 56.2 96 37.5
Gorai.010G187800 Gossypium raimondii HOM05D000919 ORTHO05D001187 2.5e-06 56.2 97 39.2
Manes.15G064400 Manihot esculenta HOM05D000919 ORTHO05D001187 2.5e-06 56.2 97 39.2
vmacro09677 Vaccinium macrocarpon HOM05D000919 ORTHO05D001187 2.5e-06 56.2 98 43.9
BcaC03g16969 Brassica carinata HOM05D000919 ORTHO05D001187 3.2e-06 55.8 100 40.0
C02p48750 Brassica napus HOM05D000919 ORTHO05D001187 3.2e-06 55.8 100 40.0
BolC2t10967H Brassica oleracea HOM05D000919 ORTHO05D001187 3.2e-06 55.8 100 40.0
BraA02t08143Z Brassica rapa HOM05D000919 ORTHO05D001187 3.2e-06 55.8 100 40.0
Duzib211G0002 Durio zibethinus HOM05D000919 ORTHO05D001187 3.2e-06 55.8 97 37.1
Lsat_1_v5_gn_7_13780 Lactuca sativa HOM05D000919 ORTHO05D001187 3.2e-06 55.8 97 39.2
Nn1g03276 Nelumbo nucifera HOM05D000919 ORTHO05D001187 3.2e-06 55.8 96 39.6
Oeu016817.1 Olea europaea HOM05D000919 ORTHO05D001187 3.2e-06 55.8 94 40.4
QL05p069195 Quercus lobata HOM05D000919 ORTHO05D001187 3.2e-06 55.8 97 36.1
Sp7g16900 Schrenkiella parvula HOM05D000919 ORTHO05D001187 3.2e-06 55.8 108 38.9
AL8G10430 Arabidopsis lyrata HOM05D000919 ORTHO05D001187 4.2e-06 55.5 100 39.0
AT5G47540 Arabidopsis thaliana HOM05D000919 ORTHO05D001187 4.2e-06 55.5 100 39.0
BcaC06g31375 Brassica carinata HOM05D000919 ORTHO05D001187 4.2e-06 55.5 96 39.6
A02p31410 Brassica napus HOM05D000919 ORTHO05D001187 4.2e-06 55.5 100 40.0
A06p44990 Brassica napus HOM05D000919 ORTHO05D001187 4.2e-06 55.5 96 39.6
BraA06t27370Z Brassica rapa HOM05D000919 ORTHO05D001187 4.2e-06 55.5 96 39.6
Carub.0008s0024 Capsella rubella HOM05D000919 ORTHO05D001187 4.2e-06 55.5 100 39.0
CARHR173810 Cardamine hirsuta HOM05D000919 ORTHO05D001187 4.2e-06 55.5 100 39.0
Lj6g0026420 Lotus japonicus HOM05D000919 ORTHO05D004442 4.2e-06 55.5 95 38.9
Medtr4g133600 Medicago truncatula HOM05D000919 ORTHO05D001187 4.2e-06 55.5 95 40.0
Nn1g07422 Nelumbo nucifera HOM05D000919 ORTHO05D001187 4.2e-06 55.5 97 39.2
Potri.002G222800 Populus trichocarpa HOM05D000919 ORTHO05D001187 4.2e-06 55.5 107 38.3
THA.LOC104812803 Tarenaya hassleriana HOM05D000919 ORTHO05D001187 4.2e-06 55.5 95 42.1
unitig_748.g7916 Utricularia gibba HOM05D000919 ORTHO05D001187 4.2e-06 55.5 96 39.6
arahy.Tifrunner.gnm1.ann1.321WPP Arachis hypogaea HOM05D000919 ORTHO05D001187 5.5e-06 55.1 116 33.6
CDE07G0061 Ceratophyllum demersum HOM05D000919 ORTHO05D001187 5.5e-06 55.1 97 38.1
Ciclev10015760m.g Citrus clementina HOM05D000919 ORTHO05D001187 5.5e-06 55.1 96 41.7
Migut.M01411 Erythranthe guttata HOM05D000919 ORTHO05D001187 5.5e-06 55.1 94 40.4
Lalb_Chr13g0304311 Lupinus albus HOM05D000919 ORTHO05D001187 5.5e-06 55.1 106 37.7
arahy.Tifrunner.gnm1.ann1.6R3P3K Arachis hypogaea HOM05D000919 ORTHO05D001187 7.2e-06 54.7 96 37.5
arahy.Tifrunner.gnm1.ann1.NCUU5J Arachis hypogaea HOM05D000919 ORTHO05D001187 7.2e-06 54.7 96 37.5
MSTRG.16029 Avicennia marina HOM05D000919 ORTHO05D001187 7.2e-06 54.7 97 37.1
EL10Ac8g20216 Beta vulgaris HOM05D000919 ORTHO05D001187 9.4e-06 54.3 110 35.5
A01p20080 Brassica napus HOM05D000919 ORTHO05D001187 9.4e-06 54.3 107 40.2
BolC1t02471H Brassica oleracea HOM05D000919 ORTHO05D001187 9.4e-06 54.3 111 38.7
CiPaw.09G103600 Carya illinoinensis HOM05D000919 ORTHO05D001187 9.4e-06 54.3 97 37.1
CDE04G1618 Ceratophyllum demersum HOM05D000919 ORTHO05D001187 9.4e-06 54.3 97 38.1
Phvul.008G286700 Phaseolus vulgaris HOM05D000919 ORTHO05D001187 9.4e-06 54.3 108 37.0
Psat4g003800 Pisum sativum HOM05D000919 ORTHO05D001187 9.4e-06 54.3 100 39.0


User provided reference genes

Program Settings