Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.7e-138 495.4 254 100.0
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 4.0e-126 454.9 259 92.7
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 5.9e-85 318.2 257 70.4
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 1.0e-81 307.4 256 67.6
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.5e-80 303.5 262 66.8
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 3.3e-80 302.4 262 66.4
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 9.7e-80 300.8 262 66.4
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.2e-75 285.8 254 64.6
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.1e-74 283.1 254 64.6
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.3e-73 279.6 260 64.2
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.3e-73 279.6 260 64.2
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 5.5e-67 258.5 285 57.9
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.9e-63 245.4 273 57.1
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.1e-62 242.3 276 56.5
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.7e-61 239.6 267 56.9
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.7e-60 236.9 272 55.9
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.5e-59 233.0 265 57.4
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 9.5e-59 231.1 270 56.7
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.8e-58 229.6 265 57.7
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 2.8e-58 229.6 268 54.1
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 4.4e-56 222.2 299 51.8
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.3e-55 220.7 272 52.2
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 4.9e-55 218.8 263 56.7
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.1e-54 217.6 269 53.9
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.4e-54 217.2 316 49.4
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 1.4e-54 217.2 264 52.3
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.4e-54 216.5 264 53.4
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.4e-54 216.5 261 53.3
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.4e-54 216.5 264 54.2
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 3.2e-54 216.1 270 53.7
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.6e-53 213.8 267 53.6
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 2.7e-53 213.0 184 65.2
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 4.6e-53 212.2 264 51.5
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.0e-52 211.1 260 53.8
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.0e-52 209.5 269 51.3
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 6.6e-52 208.4 261 51.3
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 8.6e-52 208.0 266 53.4
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-51 207.2 268 52.6
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 9.5e-51 204.5 272 53.7
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.6e-50 203.8 277 52.3
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 6.2e-50 201.8 210 58.1
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.0e-50 201.4 261 52.9
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.0e-49 201.1 286 49.7
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.8e-49 200.3 271 51.7
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 1.8e-49 200.3 261 52.9
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 2.3e-49 199.9 270 53.3
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 4.0e-49 199.1 267 52.8
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 5.2e-49 198.7 264 51.1
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 8.9e-49 198.0 269 50.9
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 1.5e-48 197.2 263 50.6
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.0e-48 196.8 248 53.6
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.6e-48 196.4 262 52.3
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.6e-48 196.4 265 49.4
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.4e-48 196.1 239 54.4
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 7.5e-48 194.9 316 45.6
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 9.8e-48 194.5 258 51.2
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 9.8e-48 194.5 269 50.6
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 4.9e-47 192.2 263 50.2
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 4.9e-47 192.2 260 50.4
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 8.3e-47 191.4 264 49.6
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 8.3e-47 191.4 253 51.8
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.4e-46 190.7 265 48.7
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.4e-46 190.7 269 49.4
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.9e-46 190.3 285 47.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.4e-46 189.9 267 49.1
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.2e-46 189.5 265 48.7
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.3e-44 184.1 246 50.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 1.7e-44 183.7 269 47.2
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 3.9e-44 182.6 269 48.0
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 5.0e-44 182.2 226 51.8
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.1e-43 181.0 266 47.4
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 3.3e-43 179.5 272 50.0
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.6e-42 177.2 270 47.0
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 2.8e-42 176.4 270 47.0
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 6.2e-42 175.3 268 44.4
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 6.2e-42 175.3 262 48.1
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 4.0e-41 172.6 264 47.7
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 6.8e-41 171.8 260 45.4
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 8.9e-41 171.4 261 46.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.5e-40 170.6 268 48.1
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 2.0e-40 170.2 264 47.3
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.6e-40 169.9 268 45.9
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 5.8e-40 168.7 283 45.9
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 9.8e-40 167.9 266 45.1
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 1.3e-39 167.5 261 46.0
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 2.2e-39 166.8 215 51.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 2.2e-39 166.8 195 53.8
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.4e-39 165.2 271 46.1
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 8.3e-39 164.9 257 45.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 8.3e-39 164.9 279 45.9
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.4e-38 164.1 196 54.1
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.4e-38 163.3 273 44.0
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-38 162.5 260 46.5
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-38 162.5 260 46.5
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-38 162.5 261 46.4
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-38 162.5 261 46.4
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 7.1e-38 161.8 263 43.0
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 9.2e-38 161.4 266 43.2
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.2e-37 161.0 231 47.6
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-37 160.6 271 45.4
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.5e-37 159.5 262 46.2
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.0e-37 158.7 268 45.1
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.0e-37 158.7 266 46.6
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 7.8e-37 158.3 254 46.1
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.0e-36 157.9 269 46.1
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 1.0e-36 157.9 271 44.3
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-36 157.9 271 44.3
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.3e-36 157.5 263 45.6
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.3e-36 156.8 260 45.4
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.3e-36 156.8 265 47.5
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 2.3e-36 156.8 241 46.5
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 3.0e-36 156.4 152 59.9
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 3.0e-36 156.4 152 59.9
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 3.0e-36 156.4 152 59.9
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.9e-35 153.7 202 50.0
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.5e-35 153.3 265 46.4
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 2.5e-35 153.3 162 58.6
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 2.5e-35 153.3 162 58.6
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 4.3e-35 152.5 154 59.7
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 7.3e-35 151.8 254 44.5
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 7.3e-35 151.8 276 44.2
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.5e-35 151.4 256 43.4
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 3.6e-34 149.4 265 41.9
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 4.7e-34 149.1 265 44.5
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 6.2e-34 148.7 275 41.5
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-33 147.9 271 43.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 3.1e-33 146.4 201 49.3
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 3.1e-33 146.4 274 40.5
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 4.0e-33 146.0 268 42.5
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 4.0e-33 146.0 260 43.1
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 5.2e-33 145.6 266 41.7
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.5e-32 144.1 255 41.6
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 4.4e-32 142.5 260 43.1
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 5.8e-32 142.1 262 42.0
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 5.8e-32 142.1 257 42.8
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.3e-31 141.0 202 46.5
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 4.9e-31 139.0 261 44.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 8.4e-31 138.3 262 43.9
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 8.4e-31 138.3 260 41.2
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.1e-30 137.9 223 45.3
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.4e-30 136.7 262 40.8
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 3.2e-30 136.3 192 48.4
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 4.1e-30 136.0 187 45.5
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 9.2e-30 134.8 225 44.9
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.3e-28 131.0 199 44.7
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.3e-28 130.2 206 44.7
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 5.1e-28 129.0 251 39.8
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.6e-28 128.6 122 60.7
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.6e-28 128.3 252 39.3
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 7.3e-27 125.2 202 45.0
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 4.7e-26 122.5 195 46.7
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.1e-25 119.8 259 37.5
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 3.4e-24 116.3 215 42.8
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 9.9e-24 114.8 132 50.8
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 6.4e-23 112.1 256 36.3
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 8.4e-23 111.7 254 37.4
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.7e-21 106.7 173 43.4
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.7e-21 106.7 250 35.6
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.3e-20 104.4 255 35.7
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.7e-20 104.0 172 41.3
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.5e-19 100.9 210 39.0
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 5.6e-19 99.0 258 35.3
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.3e-19 98.6 253 37.5
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 3.6e-18 96.3 173 41.0
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.4e-17 94.4 361 28.5
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.8e-17 94.0 178 38.2
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.2e-16 91.3 100 58.0
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 2.2e-15 87.0 250 35.6
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 1.2e-13 81.3 73 63.0
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 7.9e-13 78.6 72 59.7
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 1.9e-11 73.9 152 44.1
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 7.4e-11 72.0 70 54.3
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.6e-10 70.9 117 41.0
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.6e-10 70.9 102 45.1
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 3.6e-10 69.7 252 29.4
Zm00001eb079910 Zea mays HOM05D003503 ORTHO05D003885 4.8e-10 69.3 217 30.0
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 8.1e-10 68.6 164 32.3
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.8e-09 67.4 195 34.9
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 4.0e-09 66.2 202 34.7
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 3.4e-08 63.2 182 32.4
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 1.7e-07 60.8 210 29.0
Zm00001eb245720 Zea mays HOM05D020767 ORTHO05D003885 1.7e-07 60.8 223 29.1
Phvul.011G101601 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.1e-06 58.2 113 41.6
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.9e-06 57.4 68 52.9


User provided reference genes

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