Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 0.0e+00 1289.2 698 100.0
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.9e-287 992.3 733 77.8
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.2e-286 989.6 749 77.7
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 3.3e-279 964.9 733 75.0
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.3e-279 963.8 733 75.0
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 7.3e-279 963.8 733 76.3
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.1e-277 959.9 733 74.5
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 1.0e-272 943.3 733 72.9
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 4.3e-271 937.9 713 73.4
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 5.6e-271 937.6 702 75.8
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 2.0e-268 929.1 729 72.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 7.6e-268 927.2 733 71.2
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.3e-267 926.4 794 68.3
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.7e-267 926.0 794 68.3
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 2.9e-267 925.2 733 71.8
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.5e-266 921.0 733 72.2
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 1.6e-265 919.5 733 70.8
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 7.9e-265 917.1 733 71.5
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 8.7e-264 913.7 700 74.4
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 3.3e-263 911.8 685 76.8
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 7.4e-263 910.6 737 70.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 6.2e-262 907.5 733 70.5
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 6.2e-262 907.5 733 70.4
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 6.2e-262 907.5 729 70.9
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 8.2e-262 907.1 733 71.2
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 8.2e-262 907.1 735 70.6
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.8e-261 906.0 729 70.9
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.8e-261 906.0 729 70.9
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 4.0e-261 904.8 735 71.0
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.3e-261 904.4 733 70.8
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 5.3e-261 904.4 733 70.4
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 1.5e-260 902.9 731 70.9
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 1.0e-259 900.2 714 71.4
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 3.8e-259 898.3 737 69.5
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 3.8e-259 898.3 712 71.1
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 8.4e-259 897.1 733 70.4
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 1.4e-258 896.3 712 71.2
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 1.9e-258 896.0 734 69.5
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 5.5e-258 894.4 736 68.8
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 5.5e-258 894.4 737 68.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 5.5e-258 894.4 734 69.1
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 9.3e-258 893.6 725 70.5
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 2.1e-257 892.5 739 68.7
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 2.1e-257 892.5 727 71.3
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 2.3e-256 889.0 733 69.8
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 2.3e-256 889.0 738 68.7
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 5.1e-256 887.9 733 69.8
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 7.4e-255 884.0 776 66.1
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 7.4e-255 884.0 733 70.3
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 4.8e-254 881.3 731 69.4
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 4.8e-254 881.3 729 70.2
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 8.2e-254 880.6 738 68.3
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 1.1e-253 880.2 776 65.7
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 4.1e-253 878.2 734 68.3
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 5.3e-253 877.9 729 69.7
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.2e-252 876.7 753 69.5
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 1.5e-252 876.3 737 68.4
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 2.6e-252 875.5 739 68.7
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.9e-252 874.4 729 69.7
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.9e-252 874.4 729 69.4
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 2.2e-251 872.5 746 68.0
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 2.9e-251 872.1 713 70.0
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 1.4e-250 869.8 707 70.4
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 4.2e-250 868.2 735 67.8
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 5.5e-250 867.8 734 67.6
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 2.7e-249 865.5 728 68.8
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 4.6e-249 864.8 739 67.8
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 1.4e-248 863.2 733 68.3
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.8e-248 862.8 738 67.3
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 3.9e-248 861.7 733 68.3
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 8.8e-248 860.5 740 66.9
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 1.1e-247 860.1 738 66.9
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 1.5e-247 859.8 739 66.8
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 3.3e-247 858.6 738 66.8
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 7.4e-247 857.4 730 67.3
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 1.3e-246 856.7 736 68.1
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.8e-246 855.5 778 65.3
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.6e-244 849.0 735 68.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 2.6e-244 849.0 724 67.7
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 3.4e-244 848.6 729 67.8
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 2.2e-243 845.9 732 67.1
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.1e-242 843.6 774 66.5
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.5e-242 842.4 739 66.0
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 2.5e-242 842.4 739 66.0
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 3.2e-242 842.0 737 66.2
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 5.5e-242 841.3 720 68.2
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.6e-241 839.7 735 66.1
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 3.9e-240 835.1 724 65.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.1e-239 833.6 736 65.6
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.1e-237 827.0 738 65.2
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 9.1e-237 823.9 733 65.5
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 9.1e-237 823.9 742 66.0
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 1.9e-234 816.2 709 66.7
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 9.4e-234 813.9 737 64.5
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 9.4e-234 813.9 737 64.5
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 9.7e-231 803.9 595 76.6
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.8e-230 802.4 731 64.8
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 9.1e-229 797.3 1070 49.3
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 7.7e-228 794.3 682 67.4
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 1.3e-227 793.5 729 64.7
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 7.2e-226 787.7 733 64.3
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.6e-225 786.6 733 64.3
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 2.6e-223 779.2 733 63.7
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 4.4e-223 778.5 695 65.3
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.8e-221 773.1 733 63.4
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 3.5e-220 768.8 717 63.3
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.0e-219 767.3 735 63.1
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.3e-216 756.1 664 67.0
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.6e-212 743.4 729 60.2
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 2.3e-211 739.6 726 59.9
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 8.6e-211 737.6 727 60.7
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 1.1e-210 737.3 717 61.5
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 2.1e-193 679.9 707 56.9
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 4.9e-190 668.7 713 56.7
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.4e-189 667.2 738 57.3
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 6.6e-187 658.3 711 55.1
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 4.3e-186 655.6 574 67.1
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 1.9e-178 630.2 719 53.4
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 5.3e-168 595.5 436 79.1
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 2.5e-146 523.5 724 45.7
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.6e-143 513.5 414 70.8
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.1e-138 498.0 401 70.1
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 8.2e-121 438.7 373 71.6
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.2e-117 425.6 376 62.2
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 3.8e-110 403.3 608 44.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 1.0e-86 325.5 510 45.5
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 1.0e-83 315.5 515 44.1
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.3e-78 298.5 271 64.9
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 7.3e-69 266.2 725 31.7
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 6.2e-52 209.9 146 77.4
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 5.4e-48 196.8 287 47.4
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.0e-46 192.6 548 32.3
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 3.6e-44 184.1 184 58.7
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 9.9e-42 176.0 158 59.5
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 9.9e-42 176.0 128 71.9
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.5e-39 167.5 94 90.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 4.8e-28 130.6 93 80.6
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 1.3e-25 122.5 607 26.7
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 5.3e-19 100.5 95 64.2
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 6.1e-15 87.0 684 23.0
Psat7g009760 Pisum sativum HOM05D004837 ORTHO05D005741 3.7e-12 77.8 43 83.7
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 3.1e-11 74.7 731 21.3
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.6e-10 71.6 89 57.3
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 5.9e-10 70.5 81 51.9
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 9.4e-08 63.2 89 52.8
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 7.9e-07 60.1 788 18.4
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.0e-06 59.7 89 51.7
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 2.3e-06 58.5 28 96.4
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 3.0e-06 58.2 66 50.0


User provided reference genes

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