Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.5e-298 1028.9 554 100.0
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.7e-286 988.8 554 95.7
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.5e-282 974.9 554 94.8
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.6e-273 945.7 501 95.2
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 2.1e-268 928.7 557 87.6
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 7.9e-268 926.8 564 87.2
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 3.9e-259 897.9 557 87.1
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.3e-257 892.9 501 89.0
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.2e-226 790.0 503 78.3
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.0e-222 776.9 503 77.3
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 3.8e-222 775.0 502 77.7
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 4.2e-221 771.5 503 77.7
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.2e-220 770.0 500 77.6
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.3e-219 765.8 503 76.1
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 2.2e-217 759.2 504 76.0
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 4.9e-217 758.1 503 75.5
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 3.1e-216 755.4 501 75.8
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 8.6e-214 747.3 504 74.4
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 7.3e-213 744.2 504 75.4
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 9.5e-213 743.8 503 73.2
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 3.6e-212 741.9 503 74.0
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.0e-211 740.3 491 75.8
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 1.4e-211 740.0 504 73.6
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.4e-211 740.0 504 73.6
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.8e-211 739.6 503 74.4
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 4.0e-211 738.4 503 74.0
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 4.0e-211 738.4 504 73.4
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.2e-210 736.9 501 73.1
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 2.2e-209 732.6 504 73.8
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 3.7e-209 731.9 506 73.3
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 3.7e-209 731.9 505 73.7
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.9e-209 731.5 504 73.0
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 6.4e-209 731.1 508 73.8
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 8.3e-209 730.7 504 73.0
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 1.1e-208 730.3 504 74.0
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 1.9e-208 729.6 505 73.3
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.9e-208 729.6 504 72.8
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-208 729.2 504 72.8
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 3.2e-208 728.8 503 73.0
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 9.2e-208 727.2 504 73.8
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 1.6e-207 726.5 499 73.5
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 2.7e-207 725.7 505 73.9
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.5e-207 725.3 504 73.2
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 6.0e-207 724.5 504 72.4
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 7.8e-207 724.2 503 71.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.3e-206 722.6 496 73.2
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 8.6e-206 720.7 504 72.6
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.1e-205 720.3 504 72.6
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 2.5e-205 719.2 504 73.4
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.5e-205 719.2 504 72.6
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.5e-205 719.2 504 72.6
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.3e-205 718.8 505 73.1
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 9.5e-205 717.2 555 68.1
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 9.5e-205 717.2 557 66.8
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.6e-204 716.5 505 72.5
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.1e-204 716.1 505 73.1
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 2.8e-204 715.7 502 72.7
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 6.2e-204 714.5 505 72.5
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.8e-203 713.0 507 71.4
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 2.3e-203 712.6 505 71.7
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 6.8e-203 711.1 506 71.7
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.2e-202 710.3 504 72.6
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 9.8e-202 707.2 501 71.5
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.3e-201 706.8 505 71.5
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 1.3e-201 706.8 502 70.9
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.3e-201 706.8 492 73.8
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.2e-201 706.1 506 71.7
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.2e-201 706.1 505 71.1
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 2.9e-201 705.7 506 71.9
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 4.9e-201 704.9 490 71.2
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 6.4e-201 704.5 567 67.4
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 3.2e-200 702.2 504 71.4
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 4.1e-200 701.8 504 72.0
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 5.4e-200 701.4 491 71.9
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 5.4e-200 701.4 556 66.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.3e-198 696.8 514 69.3
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 3.0e-198 695.7 505 70.5
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.1e-197 693.7 502 70.7
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 5.6e-197 691.4 505 69.9
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 9.5e-197 690.6 505 68.7
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 6.2e-196 688.0 505 70.3
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.3e-195 686.0 503 70.0
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.5e-194 683.3 503 68.8
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 1.7e-193 679.9 491 70.3
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 8.3e-193 677.6 504 70.0
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.1e-192 677.2 503 69.4
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.4e-192 676.8 505 68.9
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.1e-192 675.2 508 69.1
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 4.6e-191 671.8 506 67.6
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.0e-190 670.6 509 68.4
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 3.0e-190 669.1 506 67.6
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.9e-189 666.4 506 69.4
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 1.9e-189 666.4 564 64.0
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 3.3e-189 665.6 508 67.9
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 5.6e-189 664.8 510 67.6
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 7.3e-189 664.5 503 68.6
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.8e-187 659.8 429 77.4
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 1.8e-187 659.8 508 66.7
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 2.4e-187 659.4 504 66.3
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 5.2e-187 658.3 505 67.9
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 1.3e-185 653.7 509 66.6
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 4.2e-184 648.7 503 66.2
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.6e-183 645.2 435 74.0
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 2.5e-181 639.4 503 65.6
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 4.7e-180 635.2 503 65.4
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 2.4e-179 632.9 501 65.5
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 4.0e-179 632.1 503 62.4
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.0e-178 629.8 457 69.6
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 2.9e-177 625.9 502 64.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 5.4e-176 621.7 506 65.8
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.5e-173 612.8 505 62.2
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 7.3e-173 611.3 505 60.0
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 9.6e-173 610.9 506 62.1
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 4.5e-170 602.1 423 72.6
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 6.0e-167 591.7 509 59.5
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 8.1e-164 581.3 348 81.9
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.4e-163 579.7 500 63.6
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 2.2e-161 573.2 507 58.8
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 6.7e-158 561.6 438 65.1
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 2.0e-154 550.1 383 70.2
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 5.7e-141 505.4 446 56.3
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 9.1e-139 498.0 506 51.0
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 4.2e-136 489.2 409 62.3
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.0e-129 468.0 507 48.9
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.1e-123 448.0 503 52.1
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.7e-119 433.3 516 44.4
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.4e-117 426.0 258 78.7
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 9.1e-115 418.3 451 55.4
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 5.5e-112 409.1 454 46.9
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 7.2e-104 382.1 501 46.5
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 6.8e-102 375.6 470 47.7
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 5.8e-93 345.9 308 55.8
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 7.0e-91 339.0 326 58.3
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.4e-86 324.7 469 39.0
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 1.8e-78 297.7 380 48.2
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 8.6e-73 278.9 461 37.3
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 8.4e-68 262.3 326 41.1
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 2.4e-67 260.8 265 56.2
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 5.1e-57 226.5 505 35.0
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 2.1e-39 167.9 242 44.2
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 6.5e-36 156.4 585 23.9
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 9.7e-32 142.5 187 47.1
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 2.3e-17 94.7 92 62.0
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 8.5e-12 76.3 75 57.3
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.3e-07 62.4 53 64.2


User provided reference genes

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