Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 4.1e-215 751.1 386 100.0
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.8e-203 711.8 370 98.6
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 4.2e-159 565.1 340 84.1
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 4.1e-154 548.5 340 82.6
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 6.1e-150 534.6 341 82.4
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 6.1e-150 534.6 340 80.3
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 1.4e-149 533.5 340 80.3
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 2.3e-133 479.6 353 73.1
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 8.3e-131 471.1 354 71.5
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.1e-127 460.7 350 69.7
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.6e-126 456.8 384 64.6
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 2.8e-126 456.1 352 68.5
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 5.7e-124 448.4 348 69.0
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 2.2e-123 446.4 349 68.5
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 1.1e-122 444.1 349 69.1
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.4e-122 443.7 349 69.1
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.4e-122 443.7 343 68.8
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.1e-122 442.2 351 68.7
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 7.0e-122 441.4 360 70.0
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 7.0e-122 441.4 348 70.1
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.6e-121 440.3 343 69.4
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 2.0e-121 439.9 350 70.6
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.0e-120 437.6 371 66.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 5.0e-120 435.3 350 70.0
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 1.1e-119 434.1 344 68.3
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.9e-119 433.3 344 68.0
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.3e-119 432.6 344 68.0
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 3.6e-118 429.1 361 64.5
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.6e-118 429.1 344 67.7
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 2.3e-117 426.4 345 66.1
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.0e-117 426.0 347 68.3
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 4.0e-117 425.6 352 65.6
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 8.9e-117 424.5 350 64.6
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.6e-116 422.9 353 64.9
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 2.2e-115 419.9 352 64.2
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 2.9e-115 419.5 358 62.8
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 4.9e-115 418.7 354 64.7
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 6.4e-115 418.3 360 65.0
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.4e-114 417.2 352 64.2
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.4e-114 417.2 357 63.6
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 3.2e-114 416.0 351 63.2
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 3.2e-114 416.0 355 65.1
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 4.1e-114 415.6 350 65.4
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 4.1e-114 415.6 351 68.4
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 7.0e-114 414.8 353 63.5
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.7e-113 412.9 353 63.2
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 4.6e-113 412.1 348 67.5
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 1.3e-112 410.6 366 63.1
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 2.3e-112 409.8 350 64.9
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 5.0e-112 408.7 350 64.6
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 6.6e-112 408.3 352 66.8
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.5e-111 407.1 350 64.6
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 1.9e-111 406.8 349 62.8
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 3.3e-111 406.0 347 63.7
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 4.3e-111 405.6 351 67.2
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.8e-110 402.9 344 64.8
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 3.6e-110 402.5 352 67.3
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.8e-109 400.2 352 67.0
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 4.0e-109 399.1 351 61.0
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 4.0e-109 399.1 353 65.4
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 8.9e-109 397.9 352 63.1
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 8.9e-109 397.9 359 61.3
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.4e-108 395.6 366 60.7
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.7e-107 393.7 349 62.8
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 2.2e-107 393.3 356 63.5
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 6.4e-107 391.7 416 55.3
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 8.3e-107 391.3 349 62.2
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 1.1e-106 391.0 354 62.7
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.9e-106 390.2 355 61.4
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 3.2e-106 389.4 358 61.2
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.1e-106 389.0 353 61.2
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 9.2e-106 387.9 353 65.7
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.2e-105 387.5 351 64.7
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.6e-105 387.1 364 59.1
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 2.0e-105 386.7 349 65.0
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.5e-105 386.0 369 59.3
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 4.6e-105 385.6 351 64.4
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 6.0e-105 385.2 345 65.2
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 8.6e-104 381.3 350 61.4
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 2.5e-103 379.8 369 59.1
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 4.3e-103 379.0 349 63.9
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 4.7e-102 375.6 350 63.7
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 1.1e-101 374.4 357 61.3
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 1.1e-101 374.4 354 60.7
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 2.3e-101 373.2 348 62.6
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.1e-101 372.9 354 59.9
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.0e-100 370.2 344 60.8
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 2.6e-100 369.8 353 60.9
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.4e-98 362.1 350 63.1
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.2e-97 360.9 349 61.6
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 3.9e-96 355.9 351 59.3
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.1e-95 354.4 354 60.2
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 8.1e-94 348.2 355 59.2
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.2e-92 344.4 365 59.7
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.2e-92 344.4 362 58.0
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 7.6e-92 341.7 355 60.6
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 7.6e-92 341.7 353 60.9
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 8.4e-91 338.2 349 58.2
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 9.2e-90 334.7 348 56.9
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 4.6e-89 332.4 438 51.8
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 6.0e-89 332.0 277 63.5
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.7e-88 330.5 302 60.9
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 3.9e-88 329.3 345 55.4
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 5.1e-88 328.9 350 56.0
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.3e-87 325.9 276 69.6
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 9.6e-87 324.7 344 57.6
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 8.1e-86 321.6 348 56.3
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 8.1e-86 321.6 348 56.3
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 4.0e-85 319.3 361 58.2
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 5.2e-85 318.9 349 55.9
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.5e-84 317.4 347 53.3
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.4e-84 316.2 216 85.2
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.3e-83 314.3 349 55.3
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 2.2e-83 313.5 352 54.8
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 9.3e-82 308.1 350 54.0
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.7e-80 303.9 349 55.6
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 6.6e-80 302.0 352 56.2
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 6.6e-80 302.0 352 56.2
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.6e-78 297.4 340 55.3
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 1.1e-77 294.7 379 51.2
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 1.2e-76 291.2 352 52.8
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.3e-75 287.7 371 53.4
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 9.3e-74 281.6 456 45.2
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 3.9e-72 276.2 306 53.9
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 6.7e-72 275.4 281 54.8
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.1e-69 266.5 290 53.8
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.2e-67 260.4 375 49.1
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.8e-61 240.7 166 73.5
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.2e-60 238.0 270 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 2.0e-60 237.3 398 42.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 3.3e-55 219.9 385 43.9
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 4.5e-52 209.5 164 67.1
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 2.1e-49 200.7 98 93.9
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 6.1e-49 199.1 349 40.7
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.7e-47 192.6 99 91.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.7e-47 192.6 99 91.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.7e-46 191.0 143 65.7
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 1.4e-45 188.0 226 50.0
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.2e-44 184.9 273 47.3
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 1.2e-44 184.9 273 47.3
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.6e-44 183.7 308 45.5
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 4.5e-44 183.0 153 67.3
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.7e-41 172.9 93 89.2
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 5.1e-40 169.5 683 28.1
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 9.1e-37 158.7 214 50.9
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 3.5e-28 130.2 201 46.8
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 4.5e-28 129.8 70 84.3
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.2e-25 121.7 71 80.3
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.8e-24 117.9 111 51.4
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 8.8e-24 115.5 347 30.3
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 5.7e-23 112.8 65 83.1
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 7.5e-23 112.5 71 78.9
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 9.7e-23 112.1 173 43.4
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 6.3e-22 109.4 86 52.3
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 3.8e-19 100.1 186 42.5
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.8e-14 84.0 115 47.8
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 2.9e-11 73.9 63 58.7
CAN.G270.3 Capsicum annuum HOM05D004432 ORTHO05D005427 2.5e-10 70.9 41 80.5
Sopen12g027930 Solanum pennellii HOM05D004432 ORTHO05D051027 4.7e-09 66.6 128 43.8
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 6.1e-09 66.2 99 43.4
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 8.9e-08 62.4 74 47.3


User provided reference genes

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