Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.3e-180 636.3 342 100.0
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.0e-156 555.4 332 90.4
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 1.1e-142 510.4 332 78.0
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 2.8e-138 495.7 332 82.8
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 4.1e-134 481.9 332 81.3
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 1.7e-111 406.8 332 62.3
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.2e-109 400.6 333 65.2
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 2.3e-108 396.4 339 61.7
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 7.6e-104 381.3 332 58.7
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.0e-103 380.9 330 59.7
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 4.9e-103 378.6 274 78.8
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 4.9e-103 378.6 343 57.4
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 4.9e-103 378.6 345 56.8
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 6.5e-103 378.3 265 66.8
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 4.2e-102 375.6 337 58.2
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 5.5e-102 375.2 264 70.1
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 7.1e-102 374.8 334 58.4
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 9.3e-102 374.4 305 57.7
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 1.2e-101 374.0 347 56.5
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 1.6e-101 373.6 265 67.5
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 3.0e-100 369.4 347 56.5
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 3.9e-100 369.0 269 64.7
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 5.1e-100 368.6 299 62.2
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 5.1e-100 368.6 265 67.2
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.1e-99 367.5 340 57.4
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 1.5e-99 367.1 283 64.0
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 1.9e-99 366.7 336 56.8
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.9e-99 366.7 267 64.4
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 4.3e-99 365.5 262 64.5
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 7.4e-99 364.8 334 58.1
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 7.4e-99 364.8 327 56.3
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 2.2e-98 363.2 274 62.8
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 2.2e-98 363.2 336 56.5
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 2.2e-98 363.2 333 55.6
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 2.8e-98 362.8 305 59.7
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 4.8e-98 362.1 332 56.6
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 8.2e-98 361.3 268 64.9
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 1.4e-97 360.5 269 64.3
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.8e-97 360.1 301 60.5
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 3.1e-97 359.4 289 61.2
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 4.1e-97 359.0 261 65.5
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 5.3e-97 358.6 271 63.5
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 5.3e-97 358.6 270 64.8
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 5.3e-97 358.6 265 64.9
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 6.9e-97 358.2 331 55.9
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 9.0e-97 357.8 332 55.7
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 1.2e-96 357.5 258 65.5
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 1.5e-96 357.1 336 53.3
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 2.0e-96 356.7 271 63.5
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 2.0e-96 356.7 295 61.0
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 2.0e-96 356.7 269 62.1
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 2.6e-96 356.3 334 56.0
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 2.6e-96 356.3 273 64.5
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 2.6e-96 356.3 271 63.1
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 3.4e-96 355.9 266 65.8
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 7.6e-96 354.8 310 58.7
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.0e-95 354.4 270 64.1
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 1.3e-95 354.0 281 61.6
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 1.7e-95 353.6 381 51.4
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 6.5e-95 351.7 261 65.1
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 8.5e-95 351.3 339 53.7
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 8.5e-95 351.3 340 54.4
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 2.5e-94 349.7 294 58.2
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 2.5e-94 349.7 274 60.9
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 7.2e-94 348.2 344 51.5
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 7.2e-94 348.2 344 51.5
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 7.2e-94 348.2 272 62.5
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 2.1e-93 346.7 259 62.9
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 3.6e-93 345.9 270 63.0
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 4.6e-93 345.5 343 51.6
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 7.9e-93 344.7 264 64.8
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.8e-92 343.6 277 63.2
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 2.3e-92 343.2 343 51.9
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 3.0e-92 342.8 344 51.2
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 3.0e-92 342.8 341 54.8
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 3.9e-92 342.4 343 51.9
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 1.1e-91 340.9 338 53.0
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 1.5e-91 340.5 335 53.1
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 1.5e-91 340.5 262 62.6
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 2.5e-91 339.7 269 60.6
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 4.3e-91 339.0 274 59.1
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 4.3e-91 339.0 344 51.7
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 4.3e-91 339.0 344 51.7
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 5.7e-91 338.6 260 62.3
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 5.7e-91 338.6 266 62.8
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 9.7e-91 337.8 349 49.9
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 1.3e-90 337.4 265 59.2
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 1.7e-90 337.0 337 52.8
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 4.8e-90 335.5 345 50.1
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 4.1e-89 332.4 340 50.9
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 6.9e-89 331.6 345 49.6
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 1.5e-88 330.5 346 50.6
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 1.4e-84 317.4 224 67.0
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 2.3e-84 316.6 266 59.4
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 1.1e-83 314.3 286 56.3
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 5.7e-83 312.0 269 57.2
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 4.8e-82 308.9 238 64.7
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 8.2e-82 308.1 233 63.1
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 2.4e-81 306.6 333 48.6
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 1.5e-80 303.9 227 64.8
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 2.6e-80 303.1 225 64.9
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 1.0e-79 301.2 237 61.6
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 6.7e-76 288.5 220 64.1
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.1e-73 281.2 233 59.7
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.8e-73 280.4 222 60.8
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 7.7e-72 275.0 239 57.3
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 6.3e-66 255.4 381 40.7
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 3.4e-59 233.0 274 44.2
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 2.8e-58 229.9 321 39.6
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.0e-55 221.5 179 60.9
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 1.2e-53 214.5 281 41.3
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 8.0e-53 211.8 278 40.3
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 2.3e-52 210.3 143 68.5
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 3.0e-52 209.9 269 41.3
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 1.2e-51 208.0 245 41.2
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 4.4e-51 206.1 303 42.6
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 7.5e-51 205.3 279 39.1
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 4.1e-49 199.5 157 63.1
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 7.3e-46 188.7 330 34.5
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 8.9e-44 181.8 256 41.8
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 2.6e-43 180.3 271 38.0
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 2.3e-39 167.2 163 50.9
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 5.0e-39 166.0 360 36.9
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 2.8e-37 160.2 243 35.8
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 2.3e-36 157.1 164 47.6
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 4.0e-36 156.4 170 51.2
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 1.2e-35 154.8 90 74.4
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 8.3e-34 148.7 129 56.6
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 3.5e-32 143.3 99 66.7
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 1.0e-31 141.7 285 30.5
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 1.0e-31 141.7 103 63.1
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 8.3e-26 122.1 116 50.9
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 8.9e-20 102.1 313 32.3
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 2.2e-18 97.4 192 34.9
MCO16G342 Micromonas commoda HOM05D005585 ORTHO05D006905 1.5e-14 84.7 228 27.6
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 6.4e-10 69.3 72 52.8
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 7.8e-08 62.4 241 24.9


User provided reference genes

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