Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010361g0030 Nicotiana tabacum HOM05D014219 ORTHO05D283331 1.4e-257 892.5 455 100.0
Nitab4.5_0000071g0120 Nicotiana tabacum HOM05D014219 ORTHO05D283349 1.0e-151 540.8 454 67.2
Nitab4.5_0000312g0080 Nicotiana tabacum HOM05D014219 ORTHO05D001119 5.2e-140 501.9 602 51.7
Nitab4.5_0010361g0020 Nicotiana tabacum HOM05D014219 ORTHO05D283665 4.5e-112 409.1 333 67.9
Nitab4.5_0002584g0080 Nicotiana tabacum HOM05D014219 ORTHO05D001119 1.6e-109 400.6 442 54.8
Nitab4.5_0011101g0020 Nicotiana tabacum HOM05D014219 ORTHO05D282918 1.2e-99 367.9 382 56.5
Nitab4.5_0005102g0110 Nicotiana tabacum HOM05D014219 ORTHO05D284213 1.9e-78 297.4 493 41.8
Nitab4.5_0005783g0030 Nicotiana tabacum HOM05D014219 ORTHO05D282524 1.1e-30 138.7 130 63.1
Nitab4.5_0004370g0050 Nicotiana tabacum HOM05D014219 ORTHO05D283103 2.6e-22 110.9 80 65.0
Nitab4.5_0005783g0010 Nicotiana tabacum HOM05D014219 ORTHO05D283041 1.7e-21 108.2 68 79.4
Peaxi162Scf00189g00073 Petunia axillaris HOM05D001334 ORTHO05D001119 6.5e-18 96.3 80 63.8
PGSC0003DMG400012931 Solanum tuberosum HOM05D001334 ORTHO05D001119 1.9e-17 94.7 80 63.8
Nitab4.5_0000603g0060 Nicotiana tabacum HOM05D001334 ORTHO05D001119 9.4e-17 92.4 80 60.0
Nitab4.5_0003477g0010 Nicotiana tabacum HOM05D001334 ORTHO05D001119 9.4e-17 92.4 80 61.2
Solyc03g051790.3 Solanum lycopersicum HOM05D001334 ORTHO05D001119 4.7e-16 90.1 80 60.0
Sopen03g011160 Solanum pennellii HOM05D001334 ORTHO05D001119 4.7e-16 90.1 80 60.0
CiPaw.10G029800 Carya illinoinensis HOM05D001334 ORTHO05D001119 9.1e-12 75.9 80 48.8
Cfa016876 Carpinus fangiana HOM05D001334 ORTHO05D001119 2.0e-11 74.7 85 49.4
Dinv18099 Davidia involucrata HOM05D001334 ORTHO05D001119 2.0e-11 74.7 70 55.7
Dinv24115 Davidia involucrata HOM05D001334 ORTHO05D001119 5.9e-11 73.2 80 48.8
SalBow6G3510 Salvia bowleyana HOM05D001334 ORTHO05D001119 5.9e-11 73.2 94 42.6
vmacro07874 Vaccinium macrocarpon HOM05D001334 ORTHO05D001119 5.9e-11 73.2 85 50.6
Haze_19922 Corylus avellana HOM05D001334 ORTHO05D001119 7.7e-11 72.8 85 49.4
QL07p022045 Quercus lobata HOM05D001334 ORTHO05D001119 7.7e-11 72.8 69 56.5
CSS0040096 Camellia sinensis var. sinensis HOM05D001334 ORTHO05D001119 1.7e-10 71.6 80 47.5
Cc06_g16450 Coffea canephora HOM05D001334 ORTHO05D001119 2.2e-10 71.2 79 48.1
Oeu033770.2 Olea europaea HOM05D001334 ORTHO05D001119 2.9e-10 70.9 80 46.2
Rhsim03G0011200 Rhododendron simsii HOM05D001334 ORTHO05D001119 3.8e-10 70.5 80 47.5
Ca_08489_v3 Cicer arietinum L. HOM05D001334 ORTHO05D001119 6.5e-10 69.7 88 47.7
Psat3g070600 Pisum sativum HOM05D001334 ORTHO05D001119 6.5e-10 69.7 89 46.1
Lalb_Chr25g0287521 Lupinus albus HOM05D001334 ORTHO05D001119 8.5e-10 69.3 88 48.9
FAN02G2844 Fragaria x ananassa HOM05D001334 ORTHO05D001119 1.1e-09 68.9 80 47.5
Duzib128G0715 Durio zibethinus HOM05D001334 ORTHO05D001119 1.5e-09 68.6 85 45.9
Migut.J01794 Erythranthe guttata HOM05D001334 ORTHO05D001119 1.5e-09 68.6 90 42.2
FvH4_6g23000 Fragaria vesca HOM05D001334 ORTHO05D001119 1.9e-09 68.2 80 46.2
Medtr7g092460 Medicago truncatula HOM05D001334 ORTHO05D001119 2.5e-09 67.8 88 45.5
MSTRG.6459 Avicennia marina HOM05D001334 ORTHO05D001119 4.2e-09 67.0 80 43.8
Lj1g0004478 Lotus japonicus HOM05D001334 ORTHO05D001119 4.2e-09 67.0 99 44.4
PGR004G1154 Punica granatum HOM05D001334 ORTHO05D001119 4.2e-09 67.0 81 49.4
Atru.chr1.959 Acer truncatum HOM05D001334 ORTHO05D001119 5.5e-09 66.6 80 45.0
arahy.Tifrunner.gnm1.ann1.9EZ8VA Arachis hypogaea HOM05D001334 ORTHO05D001119 5.5e-09 66.6 88 46.6
arahy.Tifrunner.gnm1.ann1.C24CLM Arachis hypogaea HOM05D001334 ORTHO05D001119 5.5e-09 66.6 88 46.6
FAN09G3832 Fragaria x ananassa HOM05D001334 ORTHO05D001119 5.5e-09 66.6 80 46.2
Lj2C376G1 Lonicera japonica HOM05D001334 ORTHO05D001119 5.5e-09 66.6 85 45.9
Gohir.D09G121800 Gossypium hirsutum HOM05D001334 ORTHO05D001119 7.2e-09 66.2 86 46.5
Gorai.006G139400 Gossypium raimondii HOM05D001334 ORTHO05D001119 7.2e-09 66.2 86 46.5
MD14G1064600 Malus domestica HOM05D001334 ORTHO05D001119 7.2e-09 66.2 80 46.2
TAR633G0230 Trochodendron aralioides HOM05D001334 ORTHO05D001119 7.2e-09 66.2 80 45.0
Actinidia09368 Actinidia chinensis HOM05D001334 ORTHO05D001119 9.4e-09 65.9 80 47.5
Duzib106G1996 Durio zibethinus HOM05D001334 ORTHO05D001119 1.2e-08 65.5 80 42.5
Gohir.A09G124800 Gossypium hirsutum HOM05D001334 ORTHO05D001119 1.2e-08 65.5 85 45.9
RcHm_v2.0_Chr3g0480801 Rosa chinensis HOM05D001334 ORTHO05D001119 1.2e-08 65.5 80 46.2
Ciclev10004356m.g Citrus clementina HOM05D001334 ORTHO05D001119 1.6e-08 65.1 80 45.0
Sabra06G0040100 Salix brachista HOM05D001334 ORTHO05D001119 1.6e-08 65.1 80 45.0
Sabra16G0055200 Salix brachista HOM05D001334 ORTHO05D001119 1.6e-08 65.1 82 42.7
COL.COLO4_28719 Corchorus olitorius HOM05D001334 ORTHO05D001119 2.1e-08 64.7 75 48.0
Manes.09G030300 Manihot esculenta HOM05D001334 ORTHO05D001119 3.6e-08 63.9 80 42.5
Prupe.7G069500 Prunus persica HOM05D001334 ORTHO05D001119 4.7e-08 63.5 93 38.7
TPR.G3819 Trifolium pratense HOM05D001334 ORTHO05D001119 4.7e-08 63.5 90 43.3
Glyma.03G140900 Glycine max HOM05D001334 ORTHO05D001119 6.1e-08 63.2 83 43.4
Lju124A34T50 Lonicera japonica HOM05D001334 ORTHO05D001119 6.1e-08 63.2 69 47.8
Thecc.05G164900 Theobroma cacao HOM05D001334 ORTHO05D001119 6.1e-08 63.2 96 40.6
Hma1.2p1_0856F.1_g229155 Hydrangea macrophylla HOM05D001334 ORTHO05D001119 1.0e-07 62.4 80 45.0
Nn2g15390 Nelumbo nucifera HOM05D001334 ORTHO05D001119 1.0e-07 62.4 80 42.5
TWI32G0280 Tripterygium wilfordii HOM05D001334 ORTHO05D001119 1.0e-07 62.4 64 50.0
MD12G1064400 Malus domestica HOM05D001334 ORTHO05D001119 1.4e-07 62.0 80 43.8
TAR623G0621 Trochodendron aralioides HOM05D001334 ORTHO05D001119 1.4e-07 62.0 80 41.2
Atru.chr1.988 Acer truncatum HOM05D001334 ORTHO05D001119 2.3e-07 61.2 83 43.4
Potri.006G056800 Populus trichocarpa HOM05D001334 ORTHO05D001119 2.3e-07 61.2 80 42.5
PSO339G2873 Papaver somniferum HOM05D001334 ORTHO05D001119 3.0e-07 60.8 70 45.7
Glyma.19G143600 Glycine max HOM05D001334 ORTHO05D001119 4.0e-07 60.5 82 42.7
PSO384G3560 Papaver somniferum HOM05D001334 ORTHO05D001119 4.0e-07 60.5 70 47.1
GSVIVG01033345001 Vitis vinifera HOM05D001334 ORTHO05D001119 4.0e-07 60.5 80 47.5
MSTRG.19886 Avicennia marina HOM05D001334 ORTHO05D001119 5.2e-07 60.1 96 36.5
Lsat_1_v5_gn_8_79460 Lactuca sativa HOM05D001334 ORTHO05D001119 5.2e-07 60.1 84 40.5
SGA_v2.0_scaffold105G30460 Striga asiatica HOM05D001334 ORTHO05D001119 5.2e-07 60.1 84 40.5
MBI04_g13613_MAGBIO Magnolia biondii HOM05D001334 ORTHO05D001119 8.8e-07 59.3 70 44.3
Eucgr.A02411 Eucalyptus grandis HOM05D001334 ORTHO05D001119 1.2e-06 58.9 70 48.6
Phvul.001G137700 Phaseolus vulgaris HOM05D001334 ORTHO05D001119 1.2e-06 58.9 83 41.0
Cpa.g.sc85.127 Carica papaya HOM05D001334 ORTHO05D001119 2.0e-06 58.2 85 40.0
Hund24751 Selenicereus undatus HOM05D001334 ORTHO05D001119 2.6e-06 57.8 58 50.0
Os08g0505200 Oryza sativa ssp. japonica HOM05D001334 ORTHO05D001119 3.4e-06 57.4 89 38.2
Ah.04g152010 Amaranthus hybridus HOM05D001334 ORTHO05D001119 5.7e-06 56.6 69 46.4
DCAR_013572 Daucus carota HOM05D001334 ORTHO05D001119 5.7e-06 56.6 79 46.8
Sed0024623 Sechium edule HOM05D001334 ORTHO05D001119 5.7e-06 56.6 54 55.6
HPP92_018944 Vanilla planifolia HOM05D001334 ORTHO05D001119 5.7e-06 56.6 85 37.6
BcaB02g08294 Brassica carinata HOM05D001334 ORTHO05D001119 7.5e-06 56.2 85 38.8
MELO3C009076.2 Cucumis melo HOM05D001334 ORTHO05D001119 7.5e-06 56.2 54 55.6
HanXRQChr05g0132721 Helianthus annuus HOM05D001334 ORTHO05D001119 7.5e-06 56.2 64 42.2
Potri.016G051500 Populus trichocarpa HOM05D001334 ORTHO05D001119 7.5e-06 56.2 76 43.4
ClCG04G000530 Citrullus lanatus HOM05D001334 ORTHO05D001119 9.8e-06 55.8 54 55.6


User provided reference genes

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