Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010354g0010 Nicotiana tabacum HOM05D000435 ORTHO05D049332 1.2e-52 209.9 130 100.0
Nitab4.5_0000932g0010 Nicotiana tabacum HOM05D000435 ORTHO05D049332 1.9e-42 176.0 125 88.0
Nitab4.5_0000030g0450 Nicotiana tabacum HOM05D000435 ORTHO05D000430 6.9e-13 77.8 47 76.6
Peaxi162Scf00193g00724 Petunia axillaris HOM05D000435 ORTHO05D000430 6.9e-13 77.8 40 87.5
CAN.G930.10 Capsicum annuum HOM05D000435 ORTHO05D000430 2.6e-12 75.9 38 89.5
Solyc08g075430.3 Solanum lycopersicum HOM05D000435 ORTHO05D000430 3.4e-12 75.5 38 86.8
Sopen08g024060 Solanum pennellii HOM05D000435 ORTHO05D000430 3.4e-12 75.5 38 86.8
PGSC0003DMG400001967 Solanum tuberosum HOM05D000435 ORTHO05D000430 3.4e-12 75.5 38 86.8
Lsat_1_v5_gn_3_20200 Lactuca sativa HOM05D000435 ORTHO05D000430 4.9e-11 71.6 47 68.1
Nitab4.5_0013109g0010 Nicotiana tabacum HOM05D000435 ORTHO05D000430 4.9e-11 71.6 47 70.2
Nitab4.5_0006410g0010 Nicotiana tabacum HOM05D000435 ORTHO05D000430 6.4e-11 71.2 38 84.2
HanXRQChr07g0198431 Helianthus annuus HOM05D000435 ORTHO05D000430 1.4e-10 70.1 46 67.4
Actinidia18168 Actinidia chinensis HOM05D000435 ORTHO05D000430 1.9e-10 69.7 41 70.7
CSS0020197 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 2.4e-10 69.3 38 76.3
HanXRQChr17g0537291 Helianthus annuus HOM05D000435 ORTHO05D000430 2.4e-10 69.3 47 68.1
vmacro14241 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 2.4e-10 69.3 38 76.3
Cc08_g05640 Coffea canephora HOM05D000435 ORTHO05D000430 3.2e-10 68.9 38 78.9
Actinidia26791 Actinidia chinensis HOM05D000435 ORTHO05D000430 4.2e-10 68.6 45 64.4
SalBow4G2663 Salvia bowleyana HOM05D000435 ORTHO05D000430 4.2e-10 68.6 38 73.7
Actinidia14733 Actinidia chinensis HOM05D000435 ORTHO05D000430 5.4e-10 68.2 41 68.3
ECA246G3535 Erigeron canadensis HOM05D000435 ORTHO05D000430 5.4e-10 68.2 47 66.0
Dinv41807 Davidia involucrata HOM05D000435 ORTHO05D000430 7.1e-10 67.8 38 78.9
Solyc08g005580.3 Solanum lycopersicum HOM05D000435 ORTHO05D000430 7.1e-10 67.8 38 81.6
PGSC0003DMG400018479 Solanum tuberosum HOM05D000435 ORTHO05D000430 7.1e-10 67.8 38 81.6
CSS0013180 Camellia sinensis var. sinensis HOM05D000435 ORTHO05D000430 9.3e-10 67.4 38 73.7
Dinv37425 Davidia involucrata HOM05D000435 ORTHO05D000430 9.3e-10 67.4 38 76.3
Migut.A00529 Erythranthe guttata HOM05D000435 ORTHO05D000430 9.3e-10 67.4 41 68.3
Thhalv10007027m.g Eutrema salsugineum HOM05D000435 ORTHO05D000430 9.3e-10 67.4 40 72.5
Aa31LG2G14330 Aethionema arabicum HOM05D000435 ORTHO05D000430 1.2e-09 67.0 38 76.3
Lalb_Chr09g0324981 Lupinus albus HOM05D000435 ORTHO05D000430 1.2e-09 67.0 38 78.9
Nitab4.5_0001175g0170 Nicotiana tabacum HOM05D000435 ORTHO05D000430 1.2e-09 67.0 38 81.6
THA.LOC104798523 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 1.2e-09 67.0 38 73.7
THA.LOC104814393 Tarenaya hassleriana HOM05D000435 ORTHO05D000430 1.2e-09 67.0 38 73.7
AL1G45840 Arabidopsis lyrata HOM05D000435 ORTHO05D000430 1.6e-09 66.6 38 73.7
AT1G31770 Arabidopsis thaliana HOM05D000435 ORTHO05D000430 1.6e-09 66.6 38 73.7
Carub.0001s3007 Capsella rubella HOM05D000435 ORTHO05D000430 1.6e-09 66.6 38 73.7
DCAR_030905 Daucus carota HOM05D000435 ORTHO05D000430 1.6e-09 66.6 38 76.3
GSVIVG01036869001 Vitis vinifera HOM05D000435 ORTHO05D000430 1.6e-09 66.6 38 71.1
Oeu014082.1 Olea europaea HOM05D000435 ORTHO05D000430 2.1e-09 66.2 38 73.7
QL12p004141 Quercus lobata HOM05D000435 ORTHO05D000430 2.1e-09 66.2 38 73.7
Rhsim07G0139900 Rhododendron simsii HOM05D000435 ORTHO05D000430 2.1e-09 66.2 38 73.7
Sopen08g001610 Solanum pennellii HOM05D000435 ORTHO05D000430 2.1e-09 66.2 38 78.9
MSTRG.11864 Avicennia marina HOM05D000435 ORTHO05D000430 2.7e-09 65.9 40 70.0
Phvul.002G121200 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 2.7e-09 65.9 38 76.3
TWI79G1012 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 2.7e-09 65.9 38 71.1
VMungo1215G2926 Vigna mungo HOM05D000435 ORTHO05D000430 2.7e-09 65.9 38 76.3
CARHR031070 Cardamine hirsuta HOM05D000435 ORTHO05D000430 3.5e-09 65.5 38 71.1
HanXRQChr06g0173501 Helianthus annuus HOM05D000435 ORTHO05D000430 3.5e-09 65.5 47 59.6
Lj8A1G38 Lonicera japonica HOM05D000435 ORTHO05D000430 3.5e-09 65.5 38 73.7
Lj8A343G23 Lonicera japonica HOM05D000435 ORTHO05D000430 3.5e-09 65.5 38 73.7
Lalb_Chr16g0380341 Lupinus albus HOM05D000435 ORTHO05D000430 3.5e-09 65.5 40 72.5
Nn1g09340 Nelumbo nucifera HOM05D000435 ORTHO05D000430 3.5e-09 65.5 38 68.4
MSTRG.1759 Avicennia marina HOM05D000435 ORTHO05D000430 4.6e-09 65.1 46 63.0
Manes.17G002900 Manihot esculenta HOM05D000435 ORTHO05D000430 4.6e-09 65.1 41 68.3
Sp1g27450 Schrenkiella parvula HOM05D000435 ORTHO05D000430 4.6e-09 65.1 38 71.1
CAN.G884.11 Capsicum annuum HOM05D000435 ORTHO05D000430 6.0e-09 64.7 38 76.3
CiPaw.11G075800 Carya illinoinensis HOM05D000435 ORTHO05D000430 6.0e-09 64.7 40 70.0
Ca_25035_v3 Cicer arietinum L. HOM05D000435 ORTHO05D000430 6.0e-09 64.7 38 73.7
ECA233G5057 Erigeron canadensis HOM05D000435 ORTHO05D000430 6.0e-09 64.7 46 58.7
Aa31LG9G15730 Aethionema arabicum HOM05D000435 ORTHO05D000430 7.8e-09 64.3 38 71.1
Manes.15G183300 Manihot esculenta HOM05D000435 ORTHO05D000430 7.8e-09 64.3 38 71.1
Potri.004G236500 Populus trichocarpa HOM05D000435 ORTHO05D000430 7.8e-09 64.3 38 71.1
Thecc.03G318800 Theobroma cacao HOM05D000435 ORTHO05D000430 7.8e-09 64.3 38 73.7
TWI75G1019 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 7.8e-09 64.3 38 68.4
Gohir.A12G201900 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.0e-08 63.9 40 70.0
Gohir.D12G204600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 1.0e-08 63.9 40 70.0
Gorai.008G219500 Gossypium raimondii HOM05D000435 ORTHO05D000430 1.0e-08 63.9 40 70.0
Medtr5g025470 Medicago truncatula HOM05D000435 ORTHO05D000430 1.0e-08 63.9 38 73.7
arahy.Tifrunner.gnm1.ann1.A0EMFP Arachis hypogaea HOM05D000435 ORTHO05D000430 1.7e-08 63.2 38 73.7
arahy.Tifrunner.gnm1.ann1.NJU12A Arachis hypogaea HOM05D000435 ORTHO05D000430 1.7e-08 63.2 38 73.7
BcaB07g32824 Brassica carinata HOM05D000435 ORTHO05D000430 1.7e-08 63.2 38 65.8
DCAR_004522 Daucus carota HOM05D000435 ORTHO05D000430 1.7e-08 63.2 38 65.8
Glyma.16G110100 Glycine max HOM05D000435 ORTHO05D000430 1.7e-08 63.2 38 71.1
unitig_747.g21919 Utricularia gibba HOM05D000435 ORTHO05D000430 1.7e-08 63.2 44 61.4
A05p25570 Brassica napus HOM05D000435 ORTHO05D000430 2.3e-08 62.8 47 55.3
BraA05t21439Z Brassica rapa HOM05D000435 ORTHO05D000430 2.3e-08 62.8 47 55.3
Duzib205G1136 Durio zibethinus HOM05D000435 ORTHO05D000430 2.3e-08 62.8 38 71.1
Glyma.01G154400 Glycine max HOM05D000435 ORTHO05D000430 2.3e-08 62.8 38 73.7
Glyma.16G076900 Glycine max HOM05D000435 ORTHO05D000430 2.3e-08 62.8 38 71.1
PSO675G0983 Papaver somniferum HOM05D000435 ORTHO05D000430 2.3e-08 62.8 38 68.4
BcaB03g13792 Brassica carinata HOM05D000435 ORTHO05D000430 3.0e-08 62.4 47 55.3
BcaC05g27190 Brassica carinata HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 65.8
BcaC05g27960 Brassica carinata HOM05D000435 ORTHO05D000430 3.0e-08 62.4 47 55.3
A09p34600 Brassica napus HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 65.8
C05p30900 Brassica napus HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 65.8
C05p39680 Brassica napus HOM05D000435 ORTHO05D000430 3.0e-08 62.4 47 55.3
BolC5t31820H Brassica oleracea HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 65.8
BolC5t32711H Brassica oleracea HOM05D000435 ORTHO05D000430 3.0e-08 62.4 47 55.3
BraA09t38997Z Brassica rapa HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 65.8
CDE01G0384 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 68.4
CDE12G0735 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 68.4
Glyma.11G090200 Glycine max HOM05D000435 ORTHO05D000430 3.0e-08 62.4 38 71.1
Duzib068G1279 Durio zibethinus HOM05D000435 ORTHO05D000430 3.9e-08 62.0 38 68.4
Prupe.1G353300 Prunus persica HOM05D000435 ORTHO05D000430 3.9e-08 62.0 38 71.1
Atru.chr8.2631 Acer truncatum HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 68.4
Actinidia01253 Actinidia chinensis HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 68.4
MSTRG.25742 Avicennia marina HOM05D000435 ORTHO05D000430 5.1e-08 61.6 40 67.5
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 68.4
Ciclev10011273m.g Citrus clementina HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 63.2
Haze_08437 Corylus avellana HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 68.4
Migut.E01372 Erythranthe guttata HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 65.8
Hma1.2p1_0211F.1_g089880 Hydrangea macrophylla HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 65.8
Lalb_Chr05g0215061 Lupinus albus HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 68.4
MD08G1001300 Malus domestica HOM05D000435 ORTHO05D000430 5.1e-08 61.6 42 61.9
Nn7g37390 Nelumbo nucifera HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 63.2
Phvul.003G278800 Phaseolus vulgaris HOM05D000435 ORTHO05D000430 5.1e-08 61.6 38 71.1
Lsat_1_v5_gn_6_16520 Lactuca sativa HOM05D000435 ORTHO05D000430 6.6e-08 61.2 47 59.6
Lj2g0002848 Lotus japonicus HOM05D000435 ORTHO05D000430 6.6e-08 61.2 38 65.8
Potri.003G046800 Populus trichocarpa HOM05D000435 ORTHO05D000430 6.6e-08 61.2 38 68.4
VMungo0251G0897 Vigna mungo HOM05D000435 ORTHO05D000430 6.6e-08 61.2 38 71.1
CsaV3_4G007160 Cucumis sativus L. HOM05D000435 ORTHO05D000430 8.7e-08 60.8 38 68.4
TPR.G8994 Trifolium pratense HOM05D000435 ORTHO05D000430 8.7e-08 60.8 38 68.4
MD15G1000600 Malus domestica HOM05D000435 ORTHO05D000430 1.1e-07 60.5 38 65.8
PGR031G1850 Punica granatum HOM05D000435 ORTHO05D000430 1.1e-07 60.5 38 63.2
Sed0003226 Sechium edule HOM05D000435 ORTHO05D000430 1.1e-07 60.5 38 68.4
CiPaw.12G054300 Carya illinoinensis HOM05D000435 ORTHO05D000430 1.5e-07 60.1 37 67.6
COL.COLO4_11283 Corchorus olitorius HOM05D000435 ORTHO05D000430 1.5e-07 60.1 38 68.4
FvH4_2g37300 Fragaria vesca HOM05D000435 ORTHO05D000430 1.5e-07 60.1 38 65.8
FAN15G3516 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.5e-07 60.1 38 65.8
FAN20G0513 Fragaria x ananassa HOM05D000435 ORTHO05D000430 1.5e-07 60.1 38 65.8
PSO502G0003 Papaver somniferum HOM05D000435 ORTHO05D000430 1.5e-07 60.1 38 63.2
RcHm_v2.0_Chr6g0304401 Rosa chinensis HOM05D000435 ORTHO05D000430 1.5e-07 60.1 38 65.8
Sed0026019 Sechium edule HOM05D000435 ORTHO05D000430 1.9e-07 59.7 38 63.2
MELO3C016221.2 Cucumis melo HOM05D000435 ORTHO05D000430 4.3e-07 58.5 38 65.8
Aqoxy3G03858 Aquilegia oxysepala HOM05D000435 ORTHO05D000430 7.3e-07 57.8 51 51.0
Cpa.g.sc90.34 Carica papaya HOM05D000435 ORTHO05D000430 7.3e-07 57.8 38 63.2
MBI16_g06574_MAGBIO Magnolia biondii HOM05D000435 ORTHO05D000430 9.6e-07 57.4 38 63.2
Sabra03G0019400 Salix brachista HOM05D000435 ORTHO05D000430 9.6e-07 57.4 40 62.5
SalBow8G2249 Salvia bowleyana HOM05D000435 ORTHO05D000430 9.6e-07 57.4 40 65.0
TWI31G0662 Tripterygium wilfordii HOM05D000435 ORTHO05D000430 9.6e-07 57.4 38 60.5
Oeu015541.1 Olea europaea HOM05D000435 ORTHO05D000430 1.3e-06 57.0 40 57.5
Sabra01G0180700 Salix brachista HOM05D000435 ORTHO05D000430 1.3e-06 57.0 39 66.7
TAR636G1064 Trochodendron aralioides HOM05D000435 ORTHO05D000430 1.3e-06 57.0 38 65.8
vmacro00090 Vaccinium macrocarpon HOM05D000435 ORTHO05D000430 1.3e-06 57.0 38 60.5
Eucgr.D02559 Eucalyptus grandis HOM05D000435 ORTHO05D000430 2.1e-06 56.2 38 60.5
Psat2g146080 Pisum sativum HOM05D000435 ORTHO05D000430 2.1e-06 56.2 38 63.2
CAN.G930.14 Capsicum annuum HOM05D000435 ORTHO05D000430 3.6e-06 55.5 24 95.8
PGR119G0916 Punica granatum HOM05D000435 ORTHO05D000430 4.8e-06 55.1 38 57.9
CDE02G3217 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 6.2e-06 54.7 38 60.5
CDE11G0595 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 6.2e-06 54.7 38 60.5
Gohir.D08G170600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 6.2e-06 54.7 38 63.2
Gorai.004G178100 Gossypium raimondii HOM05D000435 ORTHO05D000430 6.2e-06 54.7 38 63.2
Gohir.A08G149600 Gossypium hirsutum HOM05D000435 ORTHO05D000430 8.1e-06 54.3 38 60.5
TAR629G2005 Trochodendron aralioides HOM05D000435 ORTHO05D000430 8.1e-06 54.3 39 66.7


User provided reference genes

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