Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.8e-40 166.4 87 100.0
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-35 152.9 88 93.2
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-35 152.9 88 93.2
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 7.3e-35 150.2 88 90.9
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 9.5e-35 149.8 88 90.9
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 9.5e-35 149.8 88 92.0
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 9.5e-35 149.8 88 92.0
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 2.1e-34 148.7 88 92.0
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 2.1e-34 148.7 88 92.0
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 2.1e-34 148.7 88 92.0
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 2.8e-34 148.3 88 90.9
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.8e-34 148.3 88 90.9
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 3.6e-34 147.9 88 90.9
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 3.6e-34 147.9 88 90.9
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 3.6e-34 147.9 88 90.9
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 3.6e-34 147.9 88 90.9
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 4.7e-34 147.5 88 90.9
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 8.0e-34 146.7 88 89.8
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 1.1e-33 146.4 88 90.9
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.4e-33 146.0 88 88.6
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 2.3e-33 145.2 88 89.8
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 2.3e-33 145.2 88 89.8
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 5.2e-33 144.1 88 87.5
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 1.2e-32 142.9 86 89.5
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.2e-32 142.9 88 88.6
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 1.5e-32 142.5 88 87.5
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 3.4e-32 141.4 88 86.4
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 3.4e-32 141.4 88 89.8
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 3.4e-32 141.4 88 89.8
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 3.4e-32 141.4 88 88.6
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 4.4e-32 141.0 88 88.6
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 4.4e-32 141.0 88 88.6
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 9.8e-32 139.8 88 87.5
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 9.8e-32 139.8 88 87.5
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 9.8e-32 139.8 88 87.5
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.3e-31 139.4 88 87.5
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.7e-31 139.0 85 88.2
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 6.4e-31 137.1 88 86.4
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 6.4e-31 137.1 79 92.4
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 2.4e-30 135.2 88 85.2
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 4.1e-30 134.4 81 88.9
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 4.1e-30 134.4 81 88.9
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 5.4e-30 134.0 81 88.9
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 5.4e-30 134.0 81 88.9
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 5.4e-30 134.0 88 84.1
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 5.4e-30 134.0 80 87.5
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 7.0e-30 133.7 85 84.7
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 7.0e-30 133.7 85 84.7
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 9.2e-30 133.3 88 85.2
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 9.2e-30 133.3 88 83.0
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 6.0e-29 130.6 81 86.4
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 6.0e-29 130.6 81 86.4
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 3.9e-28 127.9 88 81.8
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.5e-27 125.2 88 81.8
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.5e-27 125.2 88 81.8
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 5.6e-27 124.0 78 85.9
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 1.2e-26 122.9 88 77.3
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 6.2e-26 120.6 77 84.4
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-25 119.8 72 90.3
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 6.8e-25 117.1 75 86.7
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 2.0e-24 115.5 64 93.8
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.9e-23 111.7 76 81.6
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.5e-19 99.4 88 69.3
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.6e-18 95.9 68 80.9
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 4.0e-17 91.3 53 90.6
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 4.0e-17 91.3 53 90.6
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 5.2e-17 90.9 89 65.2
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 3.4e-16 88.2 86 61.6
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 3.4e-16 88.2 86 61.6
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 3.4e-16 88.2 86 61.6
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 4.4e-16 87.8 86 60.5
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 5.8e-16 87.4 53 86.8
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 3.5e-13 78.2 43 95.3
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 6.0e-13 77.4 96 54.2
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 6.0e-13 77.4 96 54.2
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 7.8e-13 77.0 44 90.9
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.9e-12 74.7 45 86.7
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 2.8e-10 68.6 39 89.7
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 4.8e-10 67.8 84 51.2
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.8e-09 65.9 79 50.6
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.8e-09 65.9 79 50.6
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.0e-09 64.7 46 76.1
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.9e-09 63.9 39 82.1
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 9.0e-09 63.5 40 80.0
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 2.6e-08 62.0 34 85.3
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 7.6e-08 60.5 30 93.3
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 7.6e-08 60.5 38 86.8
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 7.6e-08 60.5 30 93.3
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.3e-07 59.7 34 82.4
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-07 59.7 45 71.1
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.7e-07 59.3 40 80.0
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 2.4e-06 55.5 59 61.0


User provided reference genes

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