Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010302g0010 Nicotiana tabacum HOM05D002317 ORTHO05D002420 7.3e-69 263.8 140 100.0
Nitab4.5_0003274g0040 Nicotiana tabacum HOM05D002317 ORTHO05D002420 3.4e-66 255.0 140 97.1
CAN.G1193.1 Capsicum annuum HOM05D002317 ORTHO05D002420 6.0e-55 217.6 140 82.1
Cc02_g08560 Coffea canephora HOM05D002317 ORTHO05D002420 1.4e-40 169.9 140 63.6
Oeu058316.1 Olea europaea HOM05D002317 ORTHO05D002420 6.6e-38 161.0 136 62.5
Oeu058317.1 Olea europaea HOM05D002317 ORTHO05D002420 6.6e-38 161.0 136 62.5
QL08p057705 Quercus lobata HOM05D002317 ORTHO05D002420 3.3e-37 158.7 139 64.0
Peaxi162Scf00658g00638 Petunia axillaris HOM05D002317 ORTHO05D002420 8.1e-36 154.1 121 74.4
GSVIVG01032617001 Vitis vinifera HOM05D002317 ORTHO05D002420 8.1e-36 154.1 141 61.7
Actinidia02994 Actinidia chinensis HOM05D002317 ORTHO05D002420 9.0e-35 150.6 140 60.7
Dinv25944 Davidia involucrata HOM05D002317 ORTHO05D002420 7.6e-34 147.5 128 64.1
CANSAT56G2271 Cannabis sativa HOM05D002317 ORTHO05D002420 2.9e-33 145.6 135 60.0
CiPaw.02G178900 Carya illinoinensis HOM05D002317 ORTHO05D002420 4.9e-33 144.8 140 59.3
Ciclev10030880m.g Citrus clementina HOM05D002317 ORTHO05D002420 8.4e-33 144.1 141 61.7
Migut.F00787 Erythranthe guttata HOM05D002317 ORTHO05D002420 8.4e-33 144.1 136 60.3
Rhsim03G0125700 Rhododendron simsii HOM05D002317 ORTHO05D002420 8.4e-33 144.1 140 58.6
TAR623G1778 Trochodendron aralioides HOM05D002317 ORTHO05D002420 1.1e-32 143.7 143 60.8
CSS0029275 Camellia sinensis var. sinensis HOM05D002317 ORTHO05D002420 1.4e-32 143.3 140 58.6
Potri.010G212900 Populus trichocarpa HOM05D002317 ORTHO05D002420 4.2e-32 141.7 140 56.4
TAR369G0742 Trochodendron aralioides HOM05D002317 ORTHO05D002420 9.3e-32 140.6 143 58.7
Actinidia38219 Actinidia chinensis HOM05D002317 ORTHO05D002420 1.6e-31 139.8 138 58.7
Prupe.2G225300 Prunus persica HOM05D002317 ORTHO05D002420 4.6e-31 138.3 140 55.0
Potri.008G048100 Populus trichocarpa HOM05D002317 ORTHO05D002420 6.0e-31 137.9 140 55.0
ClCG02G013630 Citrullus lanatus HOM05D002317 ORTHO05D002420 1.8e-30 136.3 136 55.9
FAN10G1751 Fragaria x ananassa HOM05D002317 ORTHO05D002420 1.8e-30 136.3 140 51.4
MD07G1186500 Malus domestica HOM05D002317 ORTHO05D002420 1.8e-30 136.3 136 53.7
Haze_16977 Corylus avellana HOM05D002317 ORTHO05D002420 2.3e-30 136.0 140 55.7
Sabra08G0034300 Salix brachista HOM05D002317 ORTHO05D002420 2.3e-30 136.0 140 53.6
Cpa.g.sc1.311 Carica papaya HOM05D002317 ORTHO05D002420 3.0e-30 135.6 141 58.9
Sabra10G0164800 Salix brachista HOM05D002317 ORTHO05D002420 3.9e-30 135.2 140 55.0
RcHm_v2.0_Chr1g0365121 Rosa chinensis HOM05D002317 ORTHO05D002420 5.1e-30 134.8 143 52.4
Solyc04g010220.3 Solanum lycopersicum HOM05D002317 ORTHO05D002420 5.1e-30 134.8 178 48.3
Thecc.10G060500 Theobroma cacao HOM05D002317 ORTHO05D002420 5.1e-30 134.8 143 58.0
CsaV3_5G006560 Cucumis sativus L. HOM05D002317 ORTHO05D002420 8.7e-30 134.0 135 54.8
Duzib128G0207 Durio zibethinus HOM05D002317 ORTHO05D002420 8.7e-30 134.0 140 57.1
MELO3C023813.2 Cucumis melo HOM05D002317 ORTHO05D002420 1.1e-29 133.7 136 54.4
Aqoxy2G01951 Aquilegia oxysepala HOM05D002317 ORTHO05D002420 1.5e-29 133.3 134 56.0
FAN03G3213 Fragaria x ananassa HOM05D002317 ORTHO05D002420 1.9e-29 132.9 140 51.4
Sopen04g005400 Solanum pennellii HOM05D002317 ORTHO05D002420 1.9e-29 132.9 178 47.8
FAN06G0204 Fragaria x ananassa HOM05D002317 ORTHO05D002420 2.5e-29 132.5 140 51.4
Eucgr.G02771 Eucalyptus grandis HOM05D002317 ORTHO05D002420 4.3e-29 131.7 134 53.7
MD13G1157000 Malus domestica HOM05D002317 ORTHO05D002420 4.3e-29 131.7 136 52.9
SGA_v2.0_scaffold243G44313 Striga asiatica HOM05D002317 ORTHO05D002420 1.3e-28 130.2 136 54.4
Duzib114G1018 Durio zibethinus HOM05D002317 ORTHO05D002420 1.6e-28 129.8 140 53.6
Sed0019600 Sechium edule HOM05D002317 ORTHO05D002420 2.1e-28 129.4 136 52.2
MBI14_g35935_MAGBIO Magnolia biondii HOM05D002317 ORTHO05D002420 3.6e-28 128.6 142 53.5
Atru.chr12.581 Acer truncatum HOM05D002317 ORTHO05D002420 8.1e-28 127.5 147 53.1
arahy.Tifrunner.gnm1.ann1.QR9DU5 Arachis hypogaea HOM05D002317 ORTHO05D002420 8.1e-28 127.5 134 53.7
Glyma.20G241400 Glycine max HOM05D002317 ORTHO05D002420 1.4e-27 126.7 132 56.1
Lj1C930G3 Lonicera japonica HOM05D002317 ORTHO05D002420 2.4e-27 125.9 160 52.5
Lj5A228T46 Lonicera japonica HOM05D002317 ORTHO05D002420 3.1e-27 125.6 136 56.6
arahy.Tifrunner.gnm1.ann1.KMKI2D Arachis hypogaea HOM05D002317 ORTHO05D002420 4.0e-27 125.2 136 54.4
arahy.Tifrunner.gnm1.ann1.MSYP3Y Arachis hypogaea HOM05D002317 ORTHO05D002420 4.0e-27 125.2 136 54.4
Glyma.10G292100 Glycine max HOM05D002317 ORTHO05D002420 4.0e-27 125.2 136 54.4
PSO339G5867 Papaver somniferum HOM05D002317 ORTHO05D002420 4.0e-27 125.2 141 56.7
PSO384G0194 Papaver somniferum HOM05D002317 ORTHO05D002420 4.0e-27 125.2 141 56.7
Lj5g0002945 Lotus japonicus HOM05D002317 ORTHO05D002420 6.9e-27 124.4 150 50.7
Sc20g0002370 Simmondsia chinensis HOM05D002317 ORTHO05D002420 6.9e-27 124.4 135 51.1
FAN06G4957 Fragaria x ananassa HOM05D002317 ORTHO05D002420 2.6e-26 122.5 140 50.0
AUR62035983 Chenopodium quinoa HOM05D002317 ORTHO05D002420 3.4e-26 122.1 137 53.3
Sed0008808 Sechium edule HOM05D002317 ORTHO05D002420 3.4e-26 122.1 135 49.6
ECA238G1105 Erigeron canadensis HOM05D002317 ORTHO05D002420 4.5e-26 121.7 140 55.0
Lalb_Chr06g0164131 Lupinus albus HOM05D002317 ORTHO05D002420 4.5e-26 121.7 141 52.5
AUR62041631 Chenopodium quinoa HOM05D002317 ORTHO05D002420 5.8e-26 121.3 135 51.9
HanXRQChr14g0444611 Helianthus annuus HOM05D002317 ORTHO05D002420 7.6e-26 120.9 140 55.0
Manes.10G038600 Manihot esculenta HOM05D002317 ORTHO05D002420 7.6e-26 120.9 143 51.0
DCAR_019157 Daucus carota HOM05D002317 ORTHO05D002420 9.9e-26 120.6 153 51.0
FvH4_7g20871 Fragaria vesca HOM05D002317 ORTHO05D002420 1.3e-25 120.2 140 49.3
EL10Ac2g03481 Beta vulgaris HOM05D002317 ORTHO05D002420 3.8e-25 118.6 135 53.3
Peaxi162Scf00060g00621 Petunia axillaris HOM05D002317 ORTHO05D002420 4.9e-25 118.2 181 45.3
Lalb_Chr21g0307211 Lupinus albus HOM05D002317 ORTHO05D002420 6.4e-25 117.9 143 52.4
Psat6g238320 Pisum sativum HOM05D002317 ORTHO05D002420 1.4e-24 116.7 138 50.0
Medtr1g115610 Medicago truncatula HOM05D002317 ORTHO05D002420 2.4e-24 115.9 138 50.7
Ca_11316_v3 Cicer arietinum L. HOM05D002317 ORTHO05D002420 3.2e-24 115.5 162 45.1
Phvul.007G008700 Phaseolus vulgaris HOM05D002317 ORTHO05D002420 3.2e-24 115.5 132 50.0
HanXRQChr07g0191731 Helianthus annuus HOM05D002317 ORTHO05D002420 9.3e-24 114.0 138 49.3
Gorai.012G067500 Gossypium raimondii HOM05D002317 ORTHO05D002420 1.2e-23 113.6 149 50.3
Hund30771 Selenicereus undatus HOM05D002317 ORTHO05D002420 1.2e-23 113.6 141 48.2
ATR0759G004 Amborella trichopoda HOM05D002317 ORTHO05D002420 1.6e-23 113.2 137 52.6
THA.LOC104799368 Tarenaya hassleriana HOM05D002317 ORTHO05D002420 2.7e-23 112.5 160 48.1
CDE07G0510 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 6.0e-23 111.3 140 47.9
Gohir.D04G060600 Gossypium hirsutum HOM05D002317 ORTHO05D002420 6.0e-23 111.3 149 49.7
VMungo0720G0203 Vigna mungo HOM05D002317 ORTHO05D002420 6.0e-23 111.3 133 49.6
Nn2g12844 Nelumbo nucifera HOM05D002317 ORTHO05D002420 7.9e-23 110.9 140 46.4
Gohir.A10G209900 Gossypium hirsutum HOM05D002317 ORTHO05D002420 1.8e-22 109.8 140 48.6
CDE04G0782 Ceratophyllum demersum HOM05D002317 ORTHO05D002420 3.0e-22 109.0 140 47.1
CAN.G1557.3 Capsicum annuum HOM05D002317 ORTHO05D002420 5.1e-22 108.2 180 41.1
Gohir.D10G218200 Gossypium hirsutum HOM05D002317 ORTHO05D002420 5.1e-22 108.2 140 48.6
CARHR199880 Cardamine hirsuta HOM05D002317 ORTHO05D002420 6.7e-22 107.8 136 47.8
Gohir.A05G352300 Gossypium hirsutum HOM05D002317 ORTHO05D002420 1.5e-21 106.7 149 47.7
Manes.07G107300 Manihot esculenta HOM05D002317 ORTHO05D002420 2.5e-21 105.9 140 48.6
RcHm_v2.0_Chr7g0221351 Rosa chinensis HOM05D002317 ORTHO05D002420 2.5e-21 105.9 140 45.7
vmacro07136 Vaccinium macrocarpon HOM05D002317 ORTHO05D002420 3.3e-21 105.5 140 47.1
Thhalv10012885m.g Eutrema salsugineum HOM05D002317 ORTHO05D002420 4.3e-21 105.1 135 48.1
TWI38G1115 Tripterygium wilfordii HOM05D002317 ORTHO05D002420 4.3e-21 105.1 135 49.6
AL6G24170 Arabidopsis lyrata HOM05D002317 ORTHO05D002420 7.4e-21 104.4 145 44.1
Nitab4.5_0008987g0020 Nicotiana tabacum HOM05D002317 ORTHO05D002420 9.6e-21 104.0 171 43.3
DCAR_015242 Daucus carota HOM05D002317 ORTHO05D002420 4.8e-20 101.7 149 47.0
Gorai.011G244900 Gossypium raimondii HOM05D002317 ORTHO05D002420 4.8e-20 101.7 142 48.6
unitig_0.g1962 Utricularia gibba HOM05D002317 ORTHO05D002420 8.1e-20 100.9 134 48.5
Lsat_1_v5_gn_2_68321 Lactuca sativa HOM05D002317 ORTHO05D002420 1.1e-19 100.5 137 44.5
AT5G13560 Arabidopsis thaliana HOM05D002317 ORTHO05D002420 1.4e-19 100.1 142 43.7
PGR142G0021 Punica granatum HOM05D002317 ORTHO05D002420 1.4e-19 100.1 147 45.6
C02p06230 Brassica napus HOM05D002317 ORTHO05D002420 1.8e-19 99.8 131 45.0
A02p02020 Brassica napus HOM05D002317 ORTHO05D002420 4.0e-19 98.6 137 43.8
BcaNung06331 Brassica carinata HOM05D002317 ORTHO05D002420 6.9e-19 97.8 136 44.1
BcaNung06332 Brassica carinata HOM05D002317 ORTHO05D002420 6.9e-19 97.8 134 44.0
Aa31sc157G20 Aethionema arabicum HOM05D002317 ORTHO05D002420 9.0e-19 97.4 135 43.0
BolC2t06567H Brassica oleracea HOM05D002317 ORTHO05D002420 1.2e-18 97.1 135 44.4
Carub.0006s1172 Capsella rubella HOM05D002317 ORTHO05D002420 2.0e-18 96.3 141 44.0
BcaC04g19107 Brassica carinata HOM05D002317 ORTHO05D002420 2.6e-18 95.9 138 43.5
GSVIVG01025589001 Vitis vinifera HOM05D002317 ORTHO05D002420 7.6e-18 94.4 130 44.6
Os01g0155400 Oryza sativa ssp. japonica HOM05D002317 ORTHO05D002420 1.0e-17 94.0 137 45.3
Zm00001eb123790 Zea mays HOM05D002317 ORTHO05D002420 1.7e-17 93.2 139 41.0
BcaNung01145 Brassica carinata HOM05D002317 ORTHO05D002420 2.2e-17 92.8 134 43.3
BraA10t44534Z Brassica rapa HOM05D002317 ORTHO05D002420 2.2e-17 92.8 137 43.1
A10p24710 Brassica napus HOM05D002317 ORTHO05D002420 2.9e-17 92.4 137 42.3
C09p63540 Brassica napus HOM05D002317 ORTHO05D002420 4.9e-17 91.7 137 43.1
BraA02t05174Z Brassica rapa HOM05D002317 ORTHO05D002420 6.5e-17 91.3 135 43.0
Nitab4.5_0000426g0180 Nicotiana tabacum HOM05D002317 ORTHO05D002420 1.4e-16 90.1 175 38.9
Sp6g30470 Schrenkiella parvula HOM05D002317 ORTHO05D002420 1.9e-16 89.7 136 41.9
BolC9t59198H Brassica oleracea HOM05D002317 ORTHO05D002420 2.5e-16 89.4 137 42.3
Aqoxy4G03076 Aquilegia oxysepala HOM05D002317 ORTHO05D002420 3.2e-16 89.0 124 42.7
Dinv35666 Davidia involucrata HOM05D002317 ORTHO05D002420 7.1e-16 87.8 181 38.7
FAN01G1115 Fragaria x ananassa HOM05D003093 ORTHO05D004301 6.0e-15 84.7 77 57.1
BcaNung01891 Brassica carinata HOM05D002317 ORTHO05D002420 7.9e-15 84.3 131 42.0
Cfa017456 Carpinus fangiana HOM05D002317 ORTHO05D002420 3.0e-14 82.4 132 42.4
QL07p046169 Quercus lobata HOM05D002317 ORTHO05D002420 1.1e-13 80.5 123 43.9
PGR004G1305 Punica granatum HOM05D002317 ORTHO05D002420 1.5e-13 80.1 144 36.8
Potri.016G080900 Populus trichocarpa HOM05D002317 ORTHO05D002420 1.9e-13 79.7 131 39.7
Sabra16G0089100 Salix brachista HOM05D002317 ORTHO05D002420 7.4e-13 77.8 129 39.5
Haze_20704 Corylus avellana HOM05D002317 ORTHO05D002420 1.6e-12 76.6 133 39.1
Eucgr.A01215 Eucalyptus grandis HOM05D002317 ORTHO05D002420 2.8e-12 75.9 139 36.0
Manes.09G088332 Manihot esculenta HOM05D002317 ORTHO05D002420 4.8e-12 75.1 138 42.0
HPP92_000710 Vanilla planifolia HOM05D002317 ORTHO05D002420 4.8e-12 75.1 143 37.8
TWI53G1649 Tripterygium wilfordii HOM05D002317 ORTHO05D002420 8.2e-12 74.3 127 37.8
HPP92_000707 Vanilla planifolia HOM05D002317 ORTHO05D002420 1.1e-11 73.9 143 37.8
Lj3C974G20 Lonicera japonica HOM05D001809 ORTHO05D001802 1.4e-11 73.6 155 35.5
AL4G33740 Arabidopsis lyrata HOM05D002317 ORTHO05D002420 4.1e-11 72.0 136 36.0
AT2G37370 Arabidopsis thaliana HOM05D002317 ORTHO05D002420 4.1e-11 72.0 136 36.0
Phvul.007G160300 Phaseolus vulgaris HOM05D002317 ORTHO05D002420 5.3e-11 71.6 129 35.7
CSS0006098 Camellia sinensis var. sinensis HOM05D002317 ORTHO05D002420 2.0e-10 69.7 52 73.1
Aa31LG5G22700 Aethionema arabicum HOM05D002317 ORTHO05D002420 1.0e-09 67.4 128 39.1
Atru.chr8.2497 Acer truncatum HOM05D002317 ORTHO05D002420 1.7e-09 66.6 133 32.3
Glyma.13G134400 Glycine max HOM05D002317 ORTHO05D002420 1.7e-09 66.6 129 36.4
Os03g0281300 Oryza sativa ssp. japonica HOM05D002317 ORTHO05D002420 1.7e-09 66.6 129 36.4
A04p28530 Brassica napus HOM05D002317 ORTHO05D002420 2.2e-09 66.2 129 38.0
BraA04t18331Z Brassica rapa HOM05D002317 ORTHO05D002420 2.2e-09 66.2 129 38.0
Rhsim05G0185500 Rhododendron simsii HOM05D002317 ORTHO05D002420 2.2e-09 66.2 161 31.1
Manes.08G072951 Manihot esculenta HOM05D002317 ORTHO05D002420 2.9e-09 65.9 131 36.6
A05p08580 Brassica napus HOM05D002317 ORTHO05D002420 5.0e-09 65.1 128 35.9
Duzib093G0680 Durio zibethinus HOM05D002317 ORTHO05D002420 6.5e-09 64.7 131 34.4
C04p65850 Brassica napus HOM05D002317 ORTHO05D002420 8.5e-09 64.3 129 38.0
BolC4t28088H Brassica oleracea HOM05D002317 ORTHO05D002420 8.5e-09 64.3 129 38.0
Carub.0004s1927 Capsella rubella HOM05D002317 ORTHO05D002420 8.5e-09 64.3 139 34.5
TPR.G31960 Trifolium pratense HOM05D002317 ORTHO05D002420 1.1e-08 63.9 124 35.5
BcaB01g05349 Brassica carinata HOM05D002317 ORTHO05D002420 3.2e-08 62.4 39 71.8
CiPaw.10G140700 Carya illinoinensis HOM05D002317 ORTHO05D002420 3.2e-08 62.4 139 36.7
Ca_09590_v3 Cicer arietinum L. HOM05D002317 ORTHO05D002420 3.2e-08 62.4 129 32.6
CARHR132230 Cardamine hirsuta HOM05D002317 ORTHO05D002420 4.2e-08 62.0 130 36.2
RcHm_v2.0_Chr3g0467931 Rosa chinensis HOM05D002317 ORTHO05D002420 4.2e-08 62.0 170 30.6
BcaC02g07520 Brassica carinata HOM05D002317 ORTHO05D002420 5.5e-08 61.6 129 37.2
CANSAT80G2521 Cannabis sativa HOM05D002317 ORTHO05D002420 1.6e-07 60.1 129 37.2
CAN.G350.13 Capsicum annuum HOM05D002317 ORTHO05D002420 1.6e-07 60.1 180 31.1
Lj5g0009891 Lotus japonicus HOM05D002317 ORTHO05D002420 1.6e-07 60.1 131 33.6
Psat6g069560 Pisum sativum HOM05D002317 ORTHO05D002420 1.6e-07 60.1 128 33.6
Lalb_Chr02g0153331 Lupinus albus HOM05D002317 ORTHO05D002420 2.1e-07 59.7 129 33.3
MBI14_g41359_MAGBIO Magnolia biondii HOM05D002317 ORTHO05D002420 2.1e-07 59.7 55 54.5
Cpa.g.sc114.14 Carica papaya HOM05D002317 ORTHO05D002420 4.6e-07 58.5 131 34.4
Sc20g0004320 Simmondsia chinensis HOM05D002317 ORTHO05D002420 4.6e-07 58.5 130 36.2
Medtr1g067400 Medicago truncatula HOM05D002317 ORTHO05D002420 1.0e-06 57.4 130 33.8
BraA05t19826Z Brassica rapa HOM05D002317 ORTHO05D002420 1.3e-06 57.0 128 32.8
Prupe.6G246700 Prunus persica HOM05D002317 ORTHO05D002420 1.8e-06 56.6 121 38.0
PGSC0003DMG400023933 Solanum tuberosum HOM05D002317 ORTHO05D002420 1.8e-06 56.6 178 28.7
PSO339G4555 Papaver somniferum HOM05D002317 ORTHO05D002420 2.3e-06 56.2 105 36.2
PSO384G0295 Papaver somniferum HOM05D002317 ORTHO05D002420 2.3e-06 56.2 105 36.2
Migut.J00387 Erythranthe guttata HOM05D002317 ORTHO05D002420 3.9e-06 55.5 129 34.9
Ciclev10013477m.g Citrus clementina HOM05D002317 ORTHO05D002420 6.7e-06 54.7 91 39.6


User provided reference genes

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