Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.3e-107 391.3 200 100.0
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.8e-71 271.9 239 66.5
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 2.5e-70 269.2 239 65.7
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 5.5e-70 268.1 239 65.3
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 1.5e-67 260.0 209 69.9
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-67 259.6 232 63.8
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.2e-66 256.1 232 62.9
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 6.3e-66 254.6 233 61.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 1.1e-65 253.8 234 61.5
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.2e-64 250.4 234 61.1
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.3e-63 246.9 183 77.0
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 9.4e-62 240.7 233 59.7
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 4.0e-60 235.3 226 59.3
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.2e-58 229.6 232 59.1
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 9.4e-54 214.2 248 51.6
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.1e-53 213.0 220 55.5
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 1.2e-51 207.2 234 53.0
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 5.7e-51 204.9 216 55.6
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 7.5e-51 204.5 212 53.8
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.7e-50 202.2 207 52.7
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 4.8e-50 201.8 172 62.2
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 6.3e-50 201.4 196 57.7
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 8.3e-50 201.1 193 58.5
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.4e-49 199.5 232 49.6
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.1e-49 199.1 189 56.1
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 3.1e-49 199.1 189 56.1
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 3.1e-49 199.1 189 56.1
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.1e-49 199.1 227 50.7
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 3.1e-49 199.1 203 57.1
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 4.1e-49 198.7 198 56.6
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 4.1e-49 198.7 191 56.0
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 5.4e-49 198.4 177 60.5
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 9.1e-49 197.6 232 50.4
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 9.1e-49 197.6 194 55.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 9.1e-49 197.6 232 52.2
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.2e-48 197.2 189 55.6
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.6e-48 196.8 208 53.8
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.6e-48 196.8 189 55.6
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.6e-48 196.8 189 55.6
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.0e-48 196.4 209 54.1
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 2.7e-48 196.1 195 55.9
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.7e-48 196.1 219 51.1
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 2.7e-48 196.1 171 60.2
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 3.5e-48 195.7 196 54.1
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.5e-48 195.3 185 57.8
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.9e-48 194.9 211 51.2
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 7.7e-48 194.5 219 51.1
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 7.7e-48 194.5 212 52.8
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.7e-48 194.5 205 53.7
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.7e-48 194.5 215 53.0
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.0e-47 194.1 194 54.6
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 1.0e-47 194.1 223 50.7
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.0e-47 194.1 205 54.6
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.0e-47 194.1 204 53.4
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 1.3e-47 193.7 186 55.9
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 3.8e-47 192.2 194 54.6
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 3.8e-47 192.2 210 51.9
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.8e-47 192.2 210 51.9
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 5.0e-47 191.8 171 58.5
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 5.0e-47 191.8 197 54.3
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 5.0e-47 191.8 225 50.7
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 5.0e-47 191.8 196 53.1
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 6.5e-47 191.4 193 55.4
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.6e-47 191.0 186 55.4
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.1e-46 190.7 214 51.4
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 1.5e-46 190.3 170 57.1
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.5e-46 190.3 215 51.6
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.5e-46 190.3 193 53.4
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.5e-46 190.3 191 55.0
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 1.9e-46 189.9 221 49.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.9e-46 189.9 170 56.5
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 1.9e-46 189.9 193 54.4
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 2.5e-46 189.5 227 48.0
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 3.3e-46 189.1 186 55.9
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 3.3e-46 189.1 189 54.0
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 4.2e-46 188.7 217 53.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 4.2e-46 188.7 186 55.9
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 4.2e-46 188.7 195 52.3
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 4.2e-46 188.7 183 54.6
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 4.2e-46 188.7 208 51.4
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 4.2e-46 188.7 175 57.1
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 5.5e-46 188.3 210 50.5
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 7.2e-46 188.0 221 49.3
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 9.5e-46 187.6 196 54.1
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 1.6e-45 186.8 210 50.0
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 1.6e-45 186.8 170 57.6
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 2.1e-45 186.4 187 55.1
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 2.1e-45 186.4 188 54.8
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 2.1e-45 186.4 187 55.1
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 2.1e-45 186.4 197 53.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 2.1e-45 186.4 165 58.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.8e-45 186.0 198 55.6
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 3.6e-45 185.7 220 49.1
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 4.7e-45 185.3 213 51.2
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.0e-44 184.1 173 56.1
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 2.3e-44 183.0 215 48.8
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 3.0e-44 182.6 210 49.0
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 3.0e-44 182.6 212 50.9
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 5.2e-44 181.8 106 81.1
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 6.8e-44 181.4 106 79.2
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 8.9e-44 181.0 137 65.0
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 8.9e-44 181.0 186 54.8
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 4.4e-43 178.7 106 76.4
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 4.4e-43 178.7 106 76.4
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.4e-43 178.7 209 48.3
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 5.7e-43 178.3 212 49.5
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 1.3e-42 177.2 158 59.5
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 2.8e-42 176.0 200 52.0
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 4.9e-42 175.3 221 46.6
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 6.3e-42 174.9 106 79.2
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 3.1e-41 172.6 146 61.0
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 3.1e-41 172.6 172 54.7
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 4.1e-41 172.2 212 47.6
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 7.0e-41 171.4 187 52.9
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 9.2e-41 171.0 106 74.5
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.6e-40 170.2 155 58.1
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.5e-40 169.1 226 43.8
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 4.5e-40 168.7 191 51.8
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 5.9e-40 168.3 215 46.0
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 7.8e-40 167.9 165 52.1
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.0e-39 167.5 200 48.0
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 5.0e-39 165.2 198 52.5
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 8.6e-39 164.5 155 51.0
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.1e-38 164.1 182 50.5
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 1.1e-38 164.1 170 52.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.5e-38 163.7 177 52.0
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.9e-38 163.3 112 73.2
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 4.3e-38 162.2 95 77.9
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 4.3e-38 162.2 198 45.5
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 4.3e-38 162.2 94 80.9
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 4.7e-37 158.7 106 67.9
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 8.0e-37 157.9 211 45.5
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.8e-36 156.8 97 72.2
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.0e-36 156.0 97 74.2
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 3.0e-36 156.0 100 73.0
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 5.2e-36 155.2 160 51.9
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 2.0e-35 153.3 95 73.7
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 6.6e-31 138.3 102 60.8
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 8.6e-31 137.9 77 85.7
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.1e-29 133.3 100 62.0
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 6.2e-29 131.7 77 80.5
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 8.9e-28 127.9 74 77.0
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 1.4e-25 120.6 190 42.6
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 2.4e-25 119.8 162 46.3
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 3.2e-25 119.4 175 42.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 6.0e-24 115.2 100 54.0
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.0e-23 114.4 134 47.8
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 5.6e-22 108.6 97 50.5
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 7.3e-22 108.2 80 65.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.0e-20 102.4 79 63.3
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.6e-19 99.8 166 40.4
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.1e-17 91.7 59 78.0
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.7e-15 87.0 46 84.8
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 3.3e-14 82.8 116 44.0
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 1.2e-11 74.3 52 65.4
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-11 73.6 42 78.6
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-11 73.2 110 43.6
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 2.6e-11 73.2 42 76.2
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.8e-11 72.0 159 35.2
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-10 69.7 183 31.7
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 3.8e-10 69.3 193 32.6
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-08 63.9 32 93.8
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 2.7e-08 63.2 37 73.0
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 8.7e-07 58.2 35 74.3
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 5.6e-06 55.5 40 72.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 5.6e-06 55.5 40 72.5
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 7.3e-06 55.1 33 72.7
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 9.6e-06 54.7 56 44.6


User provided reference genes

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