Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 2.6e-136 488.8 262 100.0
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.7e-135 486.1 262 99.2
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 1.6e-130 469.5 262 95.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.1e-130 469.2 262 95.4
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 6.2e-130 467.6 262 93.9
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.8e-129 466.1 262 93.5
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 1.3e-127 459.9 262 92.7
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 6.4e-127 457.6 262 93.1
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.1e-126 456.8 262 92.7
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 1.9e-126 456.1 262 92.4
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 1.9e-126 456.1 262 92.4
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 86.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 85.9
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 85.1
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 86.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 5.8e-120 434.5 262 85.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 84.7
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 84.4
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 84.4
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 84.4
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 84.4
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 85.1
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 85.9
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 84.4
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 84.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 84.7
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.3
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 84.7
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 86.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 84.4
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 84.0
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 83.2
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 84.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 5.4e-118 427.9 262 84.4
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 84.4
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.0
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 84.7
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 83.6
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 84.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 84.0
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.7
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.4
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 82.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.7
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 82.8
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 83.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 83.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 83.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.0e-116 423.7 262 82.4
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 84.0
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 83.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 83.6
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 82.1
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 82.8
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.0e-116 422.2 261 83.1
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 83.2
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 82.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.6
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.2
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-115 420.2 263 83.3
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 82.4
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.0
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 82.4
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 83.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-115 418.7 263 82.9
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 81.3
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 80.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 82.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 83.6
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.6e-114 416.4 264 85.2
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 2.8e-114 415.6 263 82.1
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 81.3
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 82.8
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 6.2e-114 414.5 259 83.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 82.1
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 82.4
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 81.7
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 81.7
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 3.1e-113 412.1 262 80.2
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.3e-113 411.4 262 82.8
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.2e-112 410.2 264 81.1
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 80.9
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 2.0e-112 409.5 264 84.1
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 80.2
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.8e-111 405.2 263 81.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 4.9e-111 404.8 262 79.0
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 4.9e-111 404.8 263 79.5
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.5e-110 402.5 262 79.4
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 2.7e-109 399.1 262 79.8
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.5e-109 398.7 263 79.1
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 6.0e-109 397.9 262 78.6
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 6.0e-109 397.9 247 84.6
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.8e-108 396.4 262 78.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.8e-108 396.4 247 84.2
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 3.0e-108 395.6 262 79.0
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 6.7e-108 394.4 262 79.0
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 6.7e-108 394.4 250 80.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 80.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 6.7e-108 394.4 255 80.0
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.0
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.0
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.0
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 79.0
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.0
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.0
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.0
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.4
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 78.6
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.5e-107 392.5 262 79.0
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 2.5e-107 392.5 263 79.5
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 78.6
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 77.5
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 78.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 78.6
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 8.2e-106 387.5 263 78.3
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 8.2e-106 387.5 263 78.3
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 8.2e-106 387.5 263 78.3
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 2.4e-105 386.0 246 81.7
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 9.0e-105 384.0 270 74.8
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 2.9e-103 379.0 263 76.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 3.8e-103 378.6 263 77.6
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 77.9
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 3.2e-102 375.6 270 73.0
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.1e-102 374.4 264 76.9
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 6.0e-101 371.3 264 75.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 6.7e-100 367.9 248 77.0
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 6.7e-100 367.9 262 74.4
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.7e-100 367.5 249 76.3
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 4.3e-99 365.2 262 76.0
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.8e-97 359.8 218 86.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 5.9e-96 354.8 234 78.2
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.8e-95 352.1 263 71.5
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.9e-94 349.7 210 86.7
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.5e-94 349.4 241 77.2
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 4.2e-94 348.6 231 76.2
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 4.2e-94 348.6 221 80.1
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.1e-93 344.7 263 68.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.7e-90 336.7 214 82.2
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 1.8e-89 333.2 262 69.5
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 6.9e-89 331.3 218 78.0
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.7e-85 319.3 267 64.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 7.4e-83 311.2 253 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 1.1e-81 307.4 228 70.2
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.3e-81 305.1 231 66.7
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.4e-78 297.0 250 67.6
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.8e-74 282.7 208 69.2
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.7e-74 282.3 247 62.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 1.8e-73 280.0 204 72.1
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.2e-70 269.2 262 61.8
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 4.2e-70 268.9 263 60.1
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 3.0e-68 262.7 274 54.7
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 1.3e-66 257.3 211 64.9
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.7e-61 239.6 235 61.3
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.5e-54 217.2 244 48.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.5e-54 215.3 130 81.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.3e-50 201.4 247 49.0
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 1.8e-49 200.3 120 83.3
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.3e-47 194.1 138 76.1
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.5e-46 190.7 179 59.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 6.8e-44 181.8 118 79.7
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.6e-35 153.3 96 82.3
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.4e-35 152.5 141 62.4
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.7e-34 150.6 191 47.1
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.5e-24 116.3 69 85.5


User provided reference genes

Program Settings