Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010263g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 1.2e-86 323.2 165 100.0
Nitab4.5_0000671g0070 Nicotiana tabacum HOM05D005040 ORTHO05D005984 8.5e-85 317.0 165 98.2
Peaxi162Scf00015g00334 Petunia axillaris HOM05D005040 ORTHO05D005984 1.8e-74 282.7 156 91.0
CAN.G438.63 Capsicum annuum HOM05D005040 ORTHO05D005984 2.3e-74 282.3 156 90.4
PGSC0003DMG400028614 Solanum tuberosum HOM05D005040 ORTHO05D005984 3.0e-74 282.0 155 88.4
Cc04_g03490 Coffea canephora HOM05D005040 ORTHO05D005984 4.0e-74 281.6 151 90.7
Nitab4.5_0008982g0010 Nicotiana tabacum HOM05D005040 ORTHO05D005984 6.8e-74 280.8 151 91.4
PGSC0003DMG400002565 Solanum tuberosum HOM05D005040 ORTHO05D005984 1.7e-72 276.2 150 91.3
Solyc03g120240.3 Solanum lycopersicum HOM05D005040 ORTHO05D005984 2.2e-72 275.8 150 90.7
Sopen03g039120 Solanum pennellii HOM05D005040 ORTHO05D005984 3.7e-72 275.0 150 90.7
Thecc.06G086300 Theobroma cacao HOM05D005040 ORTHO05D005984 2.7e-70 268.9 151 86.8
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea HOM05D005040 ORTHO05D005984 4.5e-70 268.1 153 85.6
Dinv38056 Davidia involucrata HOM05D005040 ORTHO05D005984 4.5e-70 268.1 151 86.8
Gorai.011G077000 Gossypium raimondii HOM05D005040 ORTHO05D005984 4.5e-70 268.1 151 86.1
Atru.chr1.3264 Acer truncatum HOM05D005040 ORTHO05D005984 5.9e-70 267.7 150 86.7
Gorai.006G098900 Gossypium raimondii HOM05D005040 ORTHO05D005984 7.7e-70 267.3 156 83.3
Lj9C507G12 Lonicera japonica HOM05D005040 ORTHO05D005984 7.7e-70 267.3 152 85.5
MD09G1213900 Malus domestica HOM05D005040 ORTHO05D005984 7.7e-70 267.3 151 86.1
MD17G1196000 Malus domestica HOM05D005040 ORTHO05D005984 1.3e-69 266.5 151 86.1
AUR62011626 Chenopodium quinoa HOM05D005040 ORTHO05D005984 1.7e-69 266.2 150 86.0
ClCG09G002180 Citrullus lanatus HOM05D005040 ORTHO05D005984 1.7e-69 266.2 156 84.0
Prupe.3G071900 Prunus persica HOM05D005040 ORTHO05D005984 1.7e-69 266.2 151 87.4
Sopen12g022320 Solanum pennellii HOM05D005040 ORTHO05D005984 2.9e-69 265.4 151 85.4
HanXRQChr09g0275291 Helianthus annuus HOM05D005040 ORTHO05D005984 5.0e-69 264.6 151 85.4
Manes.04G123000 Manihot esculenta HOM05D005040 ORTHO05D005984 6.6e-69 264.2 151 84.8
GSVIVG01017116001 Vitis vinifera HOM05D005040 ORTHO05D005984 8.6e-69 263.8 151 85.4
Gohir.A10G079800 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.5e-68 263.1 148 86.5
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea HOM05D005040 ORTHO05D005984 1.9e-68 262.7 150 85.3
Ciclev10026697m.g Citrus clementina HOM05D005040 ORTHO05D005984 1.9e-68 262.7 151 84.8
Gohir.A09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.9e-68 262.7 151 83.4
Migut.I00862 Erythranthe guttata HOM05D005040 ORTHO05D005984 2.5e-68 262.3 151 83.4
Lalb_Chr25g0279631 Lupinus albus HOM05D005040 ORTHO05D005984 2.5e-68 262.3 151 82.8
Gohir.D10G071700 Gossypium hirsutum HOM05D005040 ORTHO05D005984 4.3e-68 261.5 151 84.8
Sc21g0005090 Simmondsia chinensis HOM05D005040 ORTHO05D005984 7.3e-68 260.8 149 84.6
CSS0035607 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 9.5e-68 260.4 150 86.7
Gohir.D09G083300 Gossypium hirsutum HOM05D005040 ORTHO05D005984 9.5e-68 260.4 151 82.8
CSS0018986 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 1.6e-67 259.6 150 86.7
TWI75G0398 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.6e-67 259.6 151 83.4
MELO3C024227.2 Cucumis melo HOM05D005040 ORTHO05D005984 2.8e-67 258.8 151 83.4
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea HOM05D005040 ORTHO05D005984 3.6e-67 258.5 154 82.5
Manes.11G047900 Manihot esculenta HOM05D005040 ORTHO05D005984 3.6e-67 258.5 151 81.5
SGA_v2.0_scaffold37G14817 Striga asiatica HOM05D005040 ORTHO05D005984 3.6e-67 258.5 154 79.9
CiPaw.01G239800 Carya illinoinensis HOM05D005040 ORTHO05D005984 4.7e-67 258.1 151 82.1
Nn8g39231 Nelumbo nucifera HOM05D005040 ORTHO05D005984 6.1e-67 257.7 153 83.7
FvH4_6g31060 Fragaria vesca HOM05D005040 ORTHO05D005984 1.0e-66 256.9 155 82.6
Lalb_Chr04g0262641 Lupinus albus HOM05D005040 ORTHO05D005984 1.0e-66 256.9 151 82.1
TAR624G1120 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.0e-66 256.9 151 82.1
Rhsim08G0220800 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.8e-66 256.1 151 83.4
CANSAT56G1939 Cannabis sativa HOM05D005040 ORTHO05D005984 2.3e-66 255.8 151 79.5
Lj5C61G9 Lonicera japonica HOM05D001315 ORTHO05D005984 2.3e-66 255.8 151 83.4
Oeu033483.1 Olea europaea HOM05D005040 ORTHO05D005984 2.3e-66 255.8 154 81.2
FAN02G3733 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.0e-66 255.4 155 81.9
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea HOM05D005040 ORTHO05D005984 4.0e-66 255.0 151 82.1
Nn2g11793 Nelumbo nucifera HOM05D005040 ORTHO05D005984 4.0e-66 255.0 153 82.4
CsaV3_7G033130 Cucumis sativus L. HOM05D005040 ORTHO05D005984 5.2e-66 254.6 151 81.5
HanXRQChr16g0501001 Helianthus annuus HOM05D005040 ORTHO05D005984 5.2e-66 254.6 151 81.5
TPR.G24183 Trifolium pratense HOM05D005040 ORTHO05D005984 5.2e-66 254.6 151 81.5
Duzib235G0181 Durio zibethinus HOM05D005040 ORTHO05D005984 6.8e-66 254.2 145 84.8
Gohir.A05G129132 Gossypium hirsutum HOM05D005040 ORTHO05D005984 6.8e-66 254.2 150 81.3
Lj3g0009600 Lotus japonicus HOM05D005040 ORTHO05D005984 8.9e-66 253.8 150 81.3
Lj3g0025298 Lotus japonicus HOM05D005040 ORTHO05D005984 8.9e-66 253.8 151 80.1
PSO782G4813 Papaver somniferum HOM05D005040 ORTHO05D005984 1.2e-65 253.4 151 79.5
FAN09G4279 Fragaria x ananassa HOM05D005040 ORTHO05D005984 1.5e-65 253.1 153 82.4
Rhsim12G0197400 Rhododendron simsii HOM05D005040 ORTHO05D005984 1.5e-65 253.1 157 78.3
Eucgr.J02995 Eucalyptus grandis HOM05D005040 ORTHO05D005984 2.0e-65 252.7 147 83.7
CSS0024080 Camellia sinensis var. sinensis HOM05D005040 ORTHO05D005984 2.6e-65 252.3 151 80.8
FAN14G0270 Fragaria x ananassa HOM05D005040 ORTHO05D005984 2.6e-65 252.3 152 82.9
FAN05G0686 Fragaria x ananassa HOM05D005040 ORTHO05D005984 3.4e-65 251.9 155 81.9
Glyma.08G207000 Glycine max HOM05D005040 ORTHO05D005984 3.4e-65 251.9 151 79.5
RcHm_v2.0_Chr2g0137751 Rosa chinensis HOM05D005040 ORTHO05D005984 3.4e-65 251.9 153 81.7
PSO063G7160 Papaver somniferum HOM05D005040 ORTHO05D005984 4.4e-65 251.5 151 78.8
EL10Ac9g21995 Beta vulgaris HOM05D005040 ORTHO05D005984 5.7e-65 251.1 166 75.3
Gorai.009G133000 Gossypium raimondii HOM05D005040 ORTHO05D005984 5.7e-65 251.1 151 80.1
TAR626G1436 Trochodendron aralioides HOM05D005040 ORTHO05D005984 7.5e-65 250.8 145 82.1
Hund00613 Selenicereus undatus HOM05D005040 ORTHO05D005984 9.8e-65 250.4 149 81.2
VMungo0331G0128 Vigna mungo HOM05D005040 ORTHO05D005984 1.3e-64 250.0 152 78.9
DCAR_007558 Daucus carota HOM05D005040 ORTHO05D005984 1.7e-64 249.6 153 81.7
Medtr4g011980 Medicago truncatula HOM05D005040 ORTHO05D005984 1.7e-64 249.6 151 78.8
Oeu025385.1 Olea europaea HOM05D005040 ORTHO05D005984 1.7e-64 249.6 162 75.9
Zm00001eb161080 Zea mays HOM05D005040 ORTHO05D005984 1.7e-64 249.6 151 78.1
CiPaw.02G151500 Carya illinoinensis HOM05D005040 ORTHO05D005984 2.2e-64 249.2 150 81.3
HPP92_007677 Vanilla planifolia HOM05D005040 ORTHO05D005984 2.2e-64 249.2 151 76.2
Psat7g252720 Pisum sativum HOM05D005040 ORTHO05D005984 4.9e-64 248.1 151 78.1
Sabra03G0031500 Salix brachista HOM05D005040 ORTHO05D005984 6.4e-64 247.7 151 80.1
Sed0010677 Sechium edule HOM05D005040 ORTHO05D005984 6.4e-64 247.7 151 78.8
Glyma.07G006400 Glycine max HOM05D005040 ORTHO05D005984 8.3e-64 247.3 151 78.8
Hund06608 Selenicereus undatus HOM05D005040 ORTHO05D005984 8.3e-64 247.3 153 77.1
Phvul.010G150900 Phaseolus vulgaris HOM05D005040 ORTHO05D005984 1.1e-63 246.9 151 78.1
TWI18G1133 Tripterygium wilfordii HOM05D005040 ORTHO05D005984 1.1e-63 246.9 151 78.1
PGR102G2548 Punica granatum HOM05D005040 ORTHO05D005984 1.8e-63 246.1 151 80.8
vmacro16949 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 2.4e-63 245.7 151 77.5
QL05p024322 Quercus lobata HOM05D005040 ORTHO05D005984 5.4e-63 244.6 150 79.3
SGA_v2.0_scaffold4G01995 Striga asiatica HOM05D005040 ORTHO05D005984 5.4e-63 244.6 150 77.3
Os01g0593600 Oryza sativa ssp. japonica HOM05D005040 ORTHO05D005984 1.2e-62 243.4 151 75.5
Sabra01G0147300 Salix brachista HOM05D005040 ORTHO05D005984 1.2e-62 243.4 152 77.6
Gohir.D05G128900 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.6e-62 243.0 151 79.5
Potri.001G179500 Populus trichocarpa HOM05D005040 ORTHO05D005984 3.5e-62 241.9 151 78.1
vmacro18916 Vaccinium macrocarpon HOM05D005040 ORTHO05D005984 3.5e-62 241.9 154 79.2
Potri.003G056100 Populus trichocarpa HOM05D005040 ORTHO05D005984 4.6e-62 241.5 151 78.8
Sp5g35760 Schrenkiella parvula HOM05D005040 ORTHO05D005984 2.3e-61 239.2 150 73.3
unitig_8.g3893 Utricularia gibba HOM05D005040 ORTHO05D005984 1.5e-60 236.5 151 76.2
Aa31LG4G290 Aethionema arabicum HOM05D001315 ORTHO05D001618 2.5e-60 235.7 150 73.3
Nitab4.5_0002438g0060 Nicotiana tabacum HOM05D005040 ORTHO05D005984 2.5e-60 235.7 150 80.7
CARHR074500 Cardamine hirsuta HOM05D005040 ORTHO05D005984 1.2e-59 233.4 150 72.0
BcaC03g16009 Brassica carinata HOM05D005040 ORTHO05D005984 1.6e-59 233.0 150 73.3
AL2G41560 Arabidopsis lyrata HOM05D005040 ORTHO05D005984 2.1e-59 232.6 150 72.7
C02p37640 Brassica napus HOM05D005040 ORTHO05D005984 2.1e-59 232.6 150 72.7
A07p26430 Brassica napus HOM05D001315 ORTHO05D001618 2.8e-59 232.3 151 71.5
BolC2t09779H Brassica oleracea HOM05D005040 ORTHO05D005984 2.8e-59 232.3 150 72.7
BraA02t07378Z Brassica rapa HOM05D005040 ORTHO05D005984 4.7e-59 231.5 150 71.3
C06p28820 Brassica napus HOM05D001315 ORTHO05D001618 1.0e-58 230.3 150 71.3
BraA07t30287Z Brassica rapa HOM05D001315 ORTHO05D001618 1.0e-58 230.3 150 71.3
AT1G79985 Arabidopsis thaliana HOM05D005040 ORTHO05D005984 1.4e-58 229.9 150 72.7
Thhalv10019282m.g Eutrema salsugineum HOM05D005040 ORTHO05D005984 1.4e-58 229.9 150 71.3
Duzib192G0809 Durio zibethinus HOM05D005040 ORTHO05D005984 2.3e-58 229.2 148 77.7
SEGI_18303 Sequoiadendron giganteum HOM05D005040 ORTHO05D005984 3.1e-58 228.8 151 71.5
Carub.0002s2753 Capsella rubella HOM05D005040 ORTHO05D005984 2.0e-57 226.1 150 70.7
THA.LOC104821737 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 4.4e-57 224.9 156 70.5
THA.LOC104813561 Tarenaya hassleriana HOM05D005040 ORTHO05D005984 2.9e-56 222.2 151 71.5
A02p23850 Brassica napus HOM05D005040 ORTHO05D005984 1.9e-55 219.5 168 63.7
FvH4_6g49470 Fragaria vesca HOM05D005040 ORTHO05D005984 3.2e-55 218.8 151 72.8
Gorai.002G059200 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.2e-55 218.8 142 76.1
FAN14G2190 Fragaria x ananassa HOM05D005040 ORTHO05D005984 9.2e-55 217.2 151 71.5
BcaB05g25300 Brassica carinata HOM05D005040 ORTHO05D005984 3.6e-51 205.3 150 66.0
Mapoly0002s0050 Marchantia polymorpha HOM05D005040 ORTHO05D005984 4.7e-51 204.9 153 64.1
ECA232G2706 Erigeron canadensis HOM05D005040 ORTHO05D005984 8.1e-51 204.1 120 83.3
Lsat_1_v5_gn_4_103600 Lactuca sativa HOM05D005040 ORTHO05D005984 8.1e-51 204.1 119 84.0
Gohir.A02G121600 Gossypium hirsutum HOM05D005040 ORTHO05D005984 1.4e-50 203.4 152 68.4
Actinidia24761 Actinidia chinensis HOM05D005040 ORTHO05D005984 1.5e-49 199.9 122 81.1
CBR_g53740 Chara braunii HOM05D005040 ORTHO05D005984 2.2e-48 196.1 145 60.7
CDE02G1346 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 8.6e-45 184.1 109 78.9
BcaC08g45282 Brassica carinata HOM05D005040 ORTHO05D005984 5.6e-44 181.4 125 68.0
Pp3c14_26240 Physcomitrium patens HOM05D005040 ORTHO05D005984 7.3e-44 181.0 153 56.2
CDE04G1379 Ceratophyllum demersum HOM05D005040 ORTHO05D005984 8.1e-43 177.6 109 75.2
unitig_22.g5468 Utricularia gibba HOM05D005040 ORTHO05D005984 4.1e-39 165.2 179 53.1
Actinidia01801 Actinidia chinensis HOM05D005040 ORTHO05D005984 3.0e-37 159.1 95 83.2
Cre10.g423950 Chlamydomonas reinhardtii HOM05D005040 ORTHO05D005984 1.2e-35 153.7 149 49.7
Gohir.D03G064100 Gossypium hirsutum HOM05D005040 ORTHO05D005984 2.4e-31 139.4 99 72.7
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea HOM05D005040 ORTHO05D005984 5.4e-31 138.3 120 61.7
Lalb_Chr01g0012631 Lupinus albus HOM05D005040 ORTHO05D005984 2.1e-30 136.3 73 86.3
Zm00001eb357580 Zea mays HOM05D005040 ORTHO05D005984 7.8e-30 134.4 73 83.6
Actinidia32759 Actinidia chinensis HOM05D005040 ORTHO05D005984 5.1e-29 131.7 71 87.3
MBI01_g34903_MAGBIO Magnolia biondii HOM05D005040 ORTHO05D005984 1.5e-28 130.2 75 82.7
PRCOL_00001887 Prasinoderma coloniale HOM05D005040 ORTHO05D005984 1.9e-28 129.8 144 47.9
SalBow2G1342 Salvia bowleyana HOM05D005040 ORTHO05D005984 1.4e-26 123.6 75 80.0
DCAR_026311 Daucus carota HOM05D001315 ORTHO05D001618 2.0e-25 119.8 75 80.0
Lalb_Chr01g0012641 Lupinus albus HOM05D005040 ORTHO05D005984 2.0e-25 119.8 79 73.4
Gohir.D02G105550 Gossypium hirsutum HOM05D005040 ORTHO05D005984 3.4e-25 119.0 66 84.8
SalBow2G3126 Salvia bowleyana HOM05D005040 ORTHO05D005984 3.4e-25 119.0 89 68.5
Gorai.005G119900 Gossypium raimondii HOM05D005040 ORTHO05D005984 3.8e-24 115.5 65 83.1
Pp3c17_23510 Physcomitrium patens HOM05D005040 ORTHO05D005984 2.1e-22 109.8 153 41.8
Solyc12g043060.1 Solanum lycopersicum HOM05D005040 ORTHO05D005984 4.6e-14 82.0 48 89.6
TAR383G0869 Trochodendron aralioides HOM05D005040 ORTHO05D005984 1.0e-08 64.3 42 71.4


User provided reference genes

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