Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 5.0e-123 444.5 232 100.0
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 4.5e-108 394.8 225 92.9
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 4.5e-108 394.8 225 93.3
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 7.7e-108 394.0 225 93.3
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 6.5e-107 391.0 222 94.1
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 6.1e-105 384.4 228 90.4
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.0e-103 379.4 225 90.7
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 3.7e-86 322.0 225 74.2
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 5.9e-84 314.7 225 72.0
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.3e-83 312.8 225 72.9
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 3.0e-83 312.4 225 72.4
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 3.9e-83 312.0 227 71.8
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 5.0e-83 311.6 225 74.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 5.6e-82 308.1 251 66.5
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 2.8e-81 305.8 227 71.4
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 1.4e-80 303.5 228 69.3
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.2e-79 300.4 225 71.1
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 2.0e-79 299.7 228 71.5
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 8.3e-78 294.3 225 71.1
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 8.3e-78 294.3 226 70.4
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 8.3e-78 294.3 225 70.2
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.4e-77 293.5 225 67.6
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 3.2e-77 292.4 225 69.8
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 3.2e-77 292.4 226 70.4
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 4.1e-77 292.0 226 69.0
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 7.0e-77 291.2 226 66.8
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 1.2e-76 290.4 227 68.3
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.0e-76 289.7 223 68.6
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 2.7e-76 289.3 225 66.7
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 6.0e-76 288.1 225 66.7
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.0e-75 287.3 225 66.2
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 2.3e-75 286.2 224 68.3
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 3.0e-75 285.8 227 67.8
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 8.6e-75 284.3 226 67.3
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.5e-74 283.5 226 66.8
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 1.9e-74 283.1 225 66.2
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.5e-74 282.7 222 68.0
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 4.3e-74 282.0 225 66.2
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 5.6e-74 281.6 227 66.5
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 9.5e-74 280.8 231 65.8
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 9.5e-74 280.8 227 65.6
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 9.5e-74 280.8 235 66.4
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 1.2e-73 280.4 227 67.8
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.6e-73 280.0 227 66.1
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 2.8e-73 279.3 225 64.0
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 3.6e-73 278.9 236 65.3
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.4e-72 276.9 228 65.8
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.4e-72 276.9 225 68.0
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 1.8e-72 276.6 228 62.3
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 2.3e-72 276.2 258 60.1
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 6.8e-72 274.6 227 64.8
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.2e-71 273.9 249 59.8
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.2e-71 273.9 243 62.1
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.5e-71 273.5 229 65.5
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 2.0e-71 273.1 227 65.2
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.4e-71 271.9 225 62.2
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 4.4e-71 271.9 231 62.8
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 4.4e-71 271.9 227 65.2
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.9e-71 270.8 231 62.3
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 9.9e-71 270.8 231 62.3
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-70 270.4 231 62.3
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 2.2e-70 269.6 225 62.7
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 2.9e-70 269.2 225 62.2
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 3.7e-70 268.9 227 65.6
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 3.7e-70 268.9 231 62.8
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 6.4e-70 268.1 225 61.3
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 6.4e-70 268.1 225 64.9
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 1.4e-69 266.9 225 61.3
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.4e-69 266.9 226 65.5
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 1.9e-69 266.5 228 59.6
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 1.9e-69 266.5 228 59.6
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.9e-69 266.5 251 59.4
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 1.9e-69 266.5 225 63.1
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 2.4e-69 266.2 224 61.6
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 3.2e-69 265.8 228 64.0
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 4.1e-69 265.4 225 60.9
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 4.1e-69 265.4 225 65.3
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 4.1e-69 265.4 227 63.4
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 4.1e-69 265.4 227 63.9
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 4.1e-69 265.4 253 58.5
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 9.2e-69 264.2 227 60.8
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 1.6e-68 263.5 225 60.4
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 2.1e-68 263.1 224 61.2
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 2.1e-68 263.1 224 61.2
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 4.6e-68 261.9 227 60.4
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 1.0e-67 260.8 223 61.9
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.3e-67 260.4 225 60.4
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 1.3e-67 260.4 231 59.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.3e-67 260.4 224 62.1
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 1.7e-67 260.0 224 60.7
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 1.7e-67 260.0 234 61.5
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 3.0e-67 259.2 227 62.6
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 3.0e-67 259.2 238 62.2
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 1.9e-66 256.5 226 61.1
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 3.3e-66 255.8 223 61.0
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 4.3e-66 255.4 226 62.8
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 7.3e-66 254.6 228 61.8
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 9.5e-66 254.2 228 59.2
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 9.5e-66 254.2 225 60.9
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.1e-64 250.8 225 62.2
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 1.5e-63 246.9 235 59.6
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 1.9e-61 240.0 225 57.8
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 2.3e-59 233.0 224 56.2
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 5.1e-59 231.9 228 56.1
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 5.1e-59 231.9 224 55.8
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 3.3e-58 229.2 224 57.6
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.8e-57 226.1 338 42.9
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 1.8e-56 223.4 224 54.5
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 4.4e-55 218.8 225 55.6
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 7.6e-55 218.0 198 63.6
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 1.1e-50 204.1 235 48.9
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 3.6e-49 199.1 226 50.9
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 4.2e-45 185.7 156 62.2
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.2e-37 159.5 116 69.0
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 7.1e-37 158.3 152 57.2
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 5.1e-35 152.1 222 42.8
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.3e-33 147.5 224 39.3
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 1.1e-32 144.4 98 79.6
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 3.4e-31 139.4 98 75.5
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.9e-30 136.3 138 55.1
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 2.9e-30 136.3 233 39.5
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 1.9e-26 123.6 153 47.1
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 1.8e-24 117.1 98 62.2
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 5.3e-24 115.5 174 39.7
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 3.4e-23 112.8 172 47.1
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 5.0e-22 109.0 102 55.9
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 5.0e-22 109.0 166 41.6
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 9.4e-21 104.8 91 59.3
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 4.6e-20 102.4 161 39.1
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 3.0e-19 99.8 57 86.0
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.8e-19 98.2 135 50.4
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 1.9e-18 97.1 278 30.2
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 3.3e-18 96.3 271 31.0
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.5e-15 85.9 85 54.1
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 2.2e-14 83.6 97 48.5
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 5.5e-13 79.0 96 53.1
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-12 77.0 89 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 2.3e-11 73.6 59 62.7
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 4.4e-10 69.3 108 45.4
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 4.8e-09 65.9 52 61.5
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 4.5e-07 59.3 72 51.4
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 5.9e-07 58.9 180 30.0
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 7.7e-07 58.5 58 55.2
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.0e-06 58.2 34 88.2
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.3e-06 57.8 153 28.1
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 5.0e-06 55.8 33 81.8


User provided reference genes

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