Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010151g0050 Nicotiana tabacum HOM05D002648 ORTHO05D036899 2.0e-40 168.7 88 100.0
Nitab4.5_0000957g0110 Nicotiana tabacum HOM05D002648 ORTHO05D036899 4.2e-38 161.0 88 96.6
Peaxi162Scf01566g00024 Petunia axillaris HOM05D002648 ORTHO05D002899 1.1e-17 93.2 50 90.0
CAN.G1495.6 Capsicum annuum HOM05D002648 ORTHO05D002899 3.1e-17 91.7 50 90.0
PGSC0003DMG400018755 Solanum tuberosum HOM05D002648 ORTHO05D002899 5.3e-17 90.9 50 90.0
Solyc07g006910.4 Solanum lycopersicum HOM05D002648 ORTHO05D002899 9.0e-17 90.1 50 88.0
Sopen07g003010 Solanum pennellii HOM05D002648 ORTHO05D002899 9.0e-17 90.1 50 88.0
Oeu009078.1 Olea europaea HOM05D002648 ORTHO05D002899 5.5e-14 80.9 50 82.0
MSTRG.19723 Avicennia marina HOM05D002648 ORTHO05D002899 1.2e-13 79.7 50 76.0
MSTRG.6243 Avicennia marina HOM05D002648 ORTHO05D002899 7.9e-13 77.0 87 48.3
SalBow6G3459 Salvia bowleyana HOM05D002648 ORTHO05D002899 1.4e-12 76.3 50 72.0
Migut.J01507 Erythranthe guttata HOM05D002648 ORTHO05D002899 3.0e-12 75.1 50 70.0
SGA_v2.0_scaffold66G22440 Striga asiatica HOM05D002648 ORTHO05D002899 5.1e-12 74.3 50 72.0
Lj5A611G51 Lonicera japonica HOM05D002648 ORTHO05D002899 6.7e-12 73.9 50 74.0
Lj5A614G13 Lonicera japonica HOM05D002648 ORTHO05D002899 6.7e-12 73.9 50 74.0
SGA_v2.0_scaffold66G22439 Striga asiatica HOM05D000043 ORTHO05D000600 1.1e-11 73.2 52 67.3
Cc06_g12950 Coffea canephora HOM05D002648 ORTHO05D002899 4.3e-11 71.2 50 76.0
Sed0001096 Sechium edule HOM05D002648 ORTHO05D002899 1.3e-10 69.7 61 63.9
CsaV3_1G032020 Cucumis sativus L. HOM05D002648 ORTHO05D002899 2.2e-10 68.9 61 62.3
unitig_744.g24141 Utricularia gibba HOM05D002648 ORTHO05D002899 2.2e-10 68.9 50 66.0
Hma1.2p1_0726F.1_g209010 Hydrangea macrophylla HOM05D002648 ORTHO05D002899 2.8e-10 68.6 50 72.0
TAR626G1427 Trochodendron aralioides HOM05D002648 ORTHO05D002899 2.8e-10 68.6 50 68.0
vmacro20838 Vaccinium macrocarpon HOM05D002648 ORTHO05D002899 3.7e-10 68.2 50 70.0
CSS0035618 Camellia sinensis var. sinensis HOM05D002648 ORTHO05D002899 4.8e-10 67.8 50 72.0
ClCG06G013800 Citrullus lanatus HOM05D002648 ORTHO05D002899 4.8e-10 67.8 61 62.3
Sed0011080 Sechium edule HOM05D002648 ORTHO05D002899 4.8e-10 67.8 61 60.7
GSVIVG01029267001 Vitis vinifera HOM05D002648 ORTHO05D002899 1.4e-09 66.2 50 68.0
Rhsim01G0120700 Rhododendron simsii HOM05D002648 ORTHO05D002899 2.4e-09 65.5 50 68.0
MBI16_g09346_MAGBIO Magnolia biondii HOM05D002648 ORTHO05D002899 4.1e-09 64.7 50 62.0
PSO063G5866 Papaver somniferum HOM05D002648 ORTHO05D002899 4.1e-09 64.7 50 64.0
PSO170G2221 Papaver somniferum HOM05D002648 ORTHO05D002899 4.1e-09 64.7 50 64.0
VMungo1309G2942 Vigna mungo HOM05D002648 ORTHO05D002899 4.1e-09 64.7 61 55.7
Dinv41201 Davidia involucrata HOM05D002648 ORTHO05D002899 5.3e-09 64.3 52 71.2
Nn8g40640 Nelumbo nucifera HOM05D002648 ORTHO05D002899 6.9e-09 63.9 50 62.0
Aqoxy23s012 Aquilegia oxysepala HOM05D002648 ORTHO05D002899 9.1e-09 63.5 50 60.0
Aqoxy7G02911 Aquilegia oxysepala HOM05D002648 ORTHO05D002899 9.1e-09 63.5 50 60.0
Glyma.15G168000 Glycine max HOM05D002648 ORTHO05D002899 1.2e-08 63.2 61 52.5
HPP92_017130 Vanilla planifolia HOM05D002648 ORTHO05D002899 1.5e-08 62.8 61 57.4
Cpa.g.sc115.57 Carica papaya HOM05D002648 ORTHO05D002899 2.0e-08 62.4 61 55.7
HanXRQChr06g0179351 Helianthus annuus HOM05D002648 ORTHO05D002899 2.0e-08 62.4 50 70.0
Lsat_1_v5_gn_8_68460 Lactuca sativa HOM05D002648 ORTHO05D002899 2.0e-08 62.4 50 70.0
Lj6g0004640 Lotus japonicus HOM05D002648 ORTHO05D002899 2.0e-08 62.4 61 52.5
SEGI_12861 Sequoiadendron giganteum HOM05D002648 ORTHO05D002899 2.0e-08 62.4 50 66.0
arahy.Tifrunner.gnm1.ann1.40AFZ3 Arachis hypogaea HOM05D002648 ORTHO05D002899 2.6e-08 62.0 61 54.1
Cfa013474 Carpinus fangiana HOM05D002648 ORTHO05D002899 3.4e-08 61.6 61 57.4
Medtr2g038410 Medicago truncatula HOM05D002648 ORTHO05D002899 4.5e-08 61.2 61 50.8
unitig_21.g20653 Utricularia gibba HOM05D002648 ORTHO05D002899 4.5e-08 61.2 50 62.0
Glyma.17G057400 Glycine max HOM05D002648 ORTHO05D002899 5.9e-08 60.8 61 49.2
Psat1g142320 Pisum sativum HOM05D002648 ORTHO05D002899 5.9e-08 60.8 61 50.8
RcHm_v2.0_Chr4g0398791 Rosa chinensis HOM05D002648 ORTHO05D002899 5.9e-08 60.8 87 42.5
TPR.G2542 Trifolium pratense HOM05D002648 ORTHO05D002899 5.9e-08 60.8 61 50.8
FvH4_4g06880 Fragaria vesca HOM05D002648 ORTHO05D002899 7.7e-08 60.5 87 42.5
FAN07G2161 Fragaria x ananassa HOM05D002648 ORTHO05D002899 7.7e-08 60.5 87 42.5
FAN12G0722 Fragaria x ananassa HOM05D002648 ORTHO05D002899 7.7e-08 60.5 87 42.5
FAN17G0178 Fragaria x ananassa HOM05D002648 ORTHO05D002899 7.7e-08 60.5 87 42.5
FAN21G1517 Fragaria x ananassa HOM05D002648 ORTHO05D002899 7.7e-08 60.5 61 54.1
FAN22G1602 Fragaria x ananassa HOM05D002648 ORTHO05D002899 7.7e-08 60.5 87 42.5
ATR0787G212 Amborella trichopoda HOM05D002648 ORTHO05D002899 1.0e-07 60.1 61 54.1
ECA236G3796 Erigeron canadensis HOM05D002648 ORTHO05D002899 1.0e-07 60.1 50 68.0
Glyma.09G061700 Glycine max HOM05D002648 ORTHO05D002899 1.0e-07 60.1 61 50.8
HanXRQChr05g0139881 Helianthus annuus HOM05D002648 ORTHO05D002899 1.0e-07 60.1 50 68.0
Lj4g0010154 Lotus japonicus HOM05D002648 ORTHO05D002899 1.0e-07 60.1 61 50.8
PSO541G0441 Papaver somniferum HOM05D002648 ORTHO05D002899 1.0e-07 60.1 50 60.0
PSO675G1903 Papaver somniferum HOM05D002648 ORTHO05D002899 1.0e-07 60.1 50 60.0
CANSAT11G1102 Cannabis sativa HOM05D002648 ORTHO05D002899 1.3e-07 59.7 61 52.5
CiPaw.07G199400 Carya illinoinensis HOM05D002648 ORTHO05D002899 1.3e-07 59.7 61 54.1
TAR624G0939 Trochodendron aralioides HOM05D002648 ORTHO05D002899 1.3e-07 59.7 50 56.0
AUR62027429 Chenopodium quinoa HOM05D002648 ORTHO05D002899 1.7e-07 59.3 50 60.0
AUR62031266 Chenopodium quinoa HOM05D002648 ORTHO05D002899 1.7e-07 59.3 50 60.0
MD13G1241400 Malus domestica HOM05D002648 ORTHO05D002899 1.7e-07 59.3 61 49.2
MD16G1244800 Malus domestica HOM05D002648 ORTHO05D002899 1.7e-07 59.3 61 49.2
Os06g0297600 Oryza sativa ssp. japonica HOM05D002648 ORTHO05D002899 1.7e-07 59.3 61 50.8
THA.LOC104811762 Tarenaya hassleriana HOM05D002648 ORTHO05D002899 1.7e-07 59.3 87 42.5
Aa31LG3G13000 Aethionema arabicum HOM05D002648 ORTHO05D002899 2.2e-07 58.9 88 43.2
Ciclev10008581m.g Citrus clementina HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
Gohir.A04G005600 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
Gohir.A05G001600 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
Gohir.D05G001900 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
Gohir.D05G384100 Gossypium hirsutum HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
Gorai.009G001800 Gossypium raimondii HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
Gorai.009G450900 Gossypium raimondii HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
LjContig00081g0022712 Lotus japonicus HOM05D002648 ORTHO05D002899 2.2e-07 58.9 61 52.5
MSTRG.14499 Avicennia marina HOM05D002648 ORTHO05D002899 2.9e-07 58.5 61 54.1
HanXRQChr11g0334401 Helianthus annuus HOM05D002648 ORTHO05D002899 2.9e-07 58.5 50 58.0
Nn1g07558 Nelumbo nucifera HOM05D002648 ORTHO05D002899 2.9e-07 58.5 79 46.8
EL10Ac8g19293 Beta vulgaris HOM05D002648 ORTHO05D002899 3.8e-07 58.2 50 58.0
CSS0003730 Camellia sinensis var. sinensis HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
CSS0014501 Camellia sinensis var. sinensis HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
Ciclev10008616m.g Citrus clementina HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
Eucgr.C00079 Eucalyptus grandis HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 54.1
Prupe.6G026800 Prunus persica HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 50.8
QL02p064689 Quercus lobata HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 55.7
RcHm_v2.0_Chr5g0076161 Rosa chinensis HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 52.5
THA.LOC104817768 Tarenaya hassleriana HOM05D002648 ORTHO05D002899 3.8e-07 58.2 87 42.5
TWI32G0862 Tripterygium wilfordii HOM05D002648 ORTHO05D002899 3.8e-07 58.2 61 55.7
vmacro11610 Vaccinium macrocarpon HOM05D002648 ORTHO05D002899 3.8e-07 58.2 49 57.1
CiPaw.12G140200 Carya illinoinensis HOM05D002648 ORTHO05D002899 5.0e-07 57.8 61 52.5
Cc05_g15170 Coffea canephora HOM05D002648 ORTHO05D002899 5.0e-07 57.8 50 56.0
Phvul.003G139700 Phaseolus vulgaris HOM05D002648 ORTHO05D002899 5.0e-07 57.8 61 50.8
Potri.006G072500 Populus trichocarpa HOM05D002648 ORTHO05D002899 5.0e-07 57.8 61 52.5
Potri.018G139500 Populus trichocarpa HOM05D002648 ORTHO05D002899 5.0e-07 57.8 61 50.8
Duzib170G0860 Durio zibethinus HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 52.5
Migut.H01741 Erythranthe guttata HOM05D002648 ORTHO05D002899 6.5e-07 57.4 50 56.0
Thhalv10013779m.g Eutrema salsugineum HOM05D002648 ORTHO05D002899 6.5e-07 57.4 89 44.9
Lj8A180T99 Lonicera japonica HOM05D002648 ORTHO05D002899 6.5e-07 57.4 50 54.0
Lalb_Chr07g0180751 Lupinus albus HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 54.1
Manes.15G057700 Manihot esculenta HOM05D002648 ORTHO05D002899 6.5e-07 57.4 50 52.0
PGR142G2228 Punica granatum HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 52.5
VMungo1215G2688 Vigna mungo HOM05D002648 ORTHO05D002899 6.5e-07 57.4 61 49.2
GSVIVG01014731001 Vitis vinifera HOM05D002648 ORTHO05D002899 6.5e-07 57.4 50 56.0
FvH4_3g42500 Fragaria vesca HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 52.5
FAN11G2461 Fragaria x ananassa HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 52.5
FAN16G1801 Fragaria x ananassa HOM05D007278 ORTHO05D009280 8.5e-07 57.0 61 52.5
FAN25G1768 Fragaria x ananassa HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 52.5
QL08p003281 Quercus lobata HOM05D002648 ORTHO05D002899 8.5e-07 57.0 61 50.8
Actinidia30381 Actinidia chinensis HOM05D002648 ORTHO05D002899 1.1e-06 56.6 86 40.7
arahy.Tifrunner.gnm1.ann1.YX70Z8 Arachis hypogaea HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 50.8
ClCG10G004350 Citrullus lanatus HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 49.2
MELO3C014109.2 Cucumis melo HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 49.2
CsaV3_3G004130 Cucumis sativus L. HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 49.2
Dinv40881 Davidia involucrata HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 49.2
Psat0s4904g0040 Pisum sativum HOM05D002648 ORTHO05D002899 1.1e-06 56.6 61 49.2
Sed0005179 Sechium edule HOM05D007278 ORTHO05D009280 1.1e-06 56.6 61 49.2
CDE04G2437 Ceratophyllum demersum HOM05D002648 ORTHO05D002899 1.4e-06 56.2 50 54.0
Ca_02130_v3 Cicer arietinum L. HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 47.5
Glyma.02G302100 Glycine max HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 50.8
Manes.06G000200 Manihot esculenta HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 52.5
Phvul.008G280700 Phaseolus vulgaris HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 50.8
Rhsim06G0232200 Rhododendron simsii HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 50.8
Sp6g18830 Schrenkiella parvula HOM05D002648 ORTHO05D002899 1.4e-06 56.2 89 43.8
Thecc.09G190700 Theobroma cacao HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 52.5
VMungo0647G0192 Vigna mungo HOM05D002648 ORTHO05D002899 1.4e-06 56.2 61 50.8
Atru.chr7.900_Atru.chr7.901 Acer truncatum HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 50.8
ATR0724G084 Amborella trichopoda HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 52.5
Duzib150G1305 Durio zibethinus HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 52.5
Nitab4.5_0000163g0090 Nicotiana tabacum HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 50.8
Peaxi162Scf00006g00534 Petunia axillaris HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 50.8
SMO146G0277 Selaginella moellendorffii HOM05D002648 ORTHO05D002899 1.9e-06 55.8 63 50.8
HPP92_015788 Vanilla planifolia HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 50.8
HPP92_015791 Vanilla planifolia HOM05D002648 ORTHO05D002899 1.9e-06 55.8 61 50.8
Atru.chr2.3747 Acer truncatum HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 49.2
Atru.chr2.3761 Acer truncatum HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 49.2
BcaC01g06466 Brassica carinata HOM05D002648 ORTHO05D002899 2.5e-06 55.5 89 42.7
A03p12980 Brassica napus HOM05D002648 ORTHO05D002899 2.5e-06 55.5 89 42.7
C03p15150 Brassica napus HOM05D002648 ORTHO05D002899 2.5e-06 55.5 89 42.7
BraA03t10606Z Brassica rapa HOM05D002648 ORTHO05D002899 2.5e-06 55.5 89 42.7
Duzib213G0538 Durio zibethinus HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 49.2
Zm00001eb281030 Zea mays HOM05D002648 ORTHO05D002899 2.5e-06 55.5 61 49.2
arahy.Tifrunner.gnm1.ann1.G1W5H1 Arachis hypogaea HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 49.2
BolC3t13956H Brassica oleracea HOM05D002648 ORTHO05D002899 3.2e-06 55.1 90 42.2
Cpa.g.sc12.133 Carica papaya HOM05D002648 ORTHO05D002899 3.2e-06 55.1 50 52.0
Ca_06411_v3 Cicer arietinum L. HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 49.2
Haze_09855 Corylus avellana HOM05D002648 ORTHO05D002899 3.2e-06 55.1 50 52.0
Lalb_Chr12g0199681 Lupinus albus HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 49.2
Medtr5g096310 Medicago truncatula HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 49.2
Nitab4.5_0000756g0050 Nicotiana tabacum HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 49.2
Solyc12g015850.1 Solanum lycopersicum HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 49.2
Sopen12g007730 Solanum pennellii HOM05D002648 ORTHO05D002899 3.2e-06 55.1 61 49.2
AL8G31510 Arabidopsis lyrata HOM05D002648 ORTHO05D002899 4.2e-06 54.7 87 39.1
ECA236G3448 Erigeron canadensis HOM05D002648 ORTHO05D002899 4.2e-06 54.7 50 54.0
Lalb_Chr17g0349001 Lupinus albus HOM05D002648 ORTHO05D002899 4.2e-06 54.7 61 50.8
Lalb_Chr23g0276621 Lupinus albus HOM05D002648 ORTHO05D002899 4.2e-06 54.7 61 45.9
MD11G1035900 Malus domestica HOM05D002648 ORTHO05D002899 4.2e-06 54.7 61 50.8
Thecc.07G008700 Theobroma cacao HOM05D002648 ORTHO05D002899 4.2e-06 54.7 61 49.2
TPR.G1265 Trifolium pratense HOM05D002648 ORTHO05D002899 4.2e-06 54.7 61 49.2
Oeu017992.1 Olea europaea HOM05D002648 ORTHO05D002899 5.5e-06 54.3 50 54.0
Os02g0724500 Oryza sativa ssp. japonica HOM05D002648 ORTHO05D002899 5.5e-06 54.3 63 46.0
Sc03g0011600 Simmondsia chinensis HOM05D002648 ORTHO05D002899 5.5e-06 54.3 61 50.8
TWI39G0766 Tripterygium wilfordii HOM05D002648 ORTHO05D002899 5.5e-06 54.3 61 47.5
MELO3C029733.2 Cucumis melo HOM05D002648 ORTHO05D002899 7.2e-06 53.9 42 61.9
Duzib168G1754 Durio zibethinus HOM05D002648 ORTHO05D002899 7.2e-06 53.9 61 47.5
Gohir.A01G093350 Gossypium hirsutum HOM05D002648 ORTHO05D002899 7.2e-06 53.9 61 49.2
Potri.001G370800 Populus trichocarpa HOM05D002648 ORTHO05D002899 7.2e-06 53.9 61 45.9
PGR083G0660 Punica granatum HOM05D002648 ORTHO05D002899 7.2e-06 53.9 61 49.2
Sabra16G0243400 Salix brachista HOM05D002648 ORTHO05D002899 7.2e-06 53.9 61 45.9
Ca_26141_v3 Cicer arietinum L. HOM05D001813 ORTHO05D003830 9.4e-06 53.5 61 47.5


User provided reference genes

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