Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010066g0010 Nicotiana tabacum HOM05D004779 ORTHO05D005737 7.8e-58 226.9 111 100.0
Nitab4.5_0008410g0030 Nicotiana tabacum HOM05D004779 ORTHO05D005737 9.0e-22 107.1 71 78.9
Solyc11g071680.2 Solanum lycopersicum HOM05D004779 ORTHO05D005737 3.4e-13 78.6 67 67.2
Sopen11g029350 Solanum pennellii HOM05D004779 ORTHO05D005737 3.4e-13 78.6 67 67.2
CAN.G439.1 Capsicum annuum HOM05D004779 ORTHO05D005737 5.0e-12 74.7 67 62.7
Peaxi162Scf01091g00011 Petunia axillaris HOM05D004779 ORTHO05D005737 1.4e-11 73.2 72 63.9
Ca_06128_v3 Cicer arietinum L. HOM05D004779 ORTHO05D005737 2.5e-11 72.4 70 55.7
Glyma.14G044700 Glycine max HOM05D004779 ORTHO05D005737 2.1e-10 69.3 73 57.5
Glyma.02G271700 Glycine max HOM05D004779 ORTHO05D005737 2.7e-10 68.9 75 54.7
Phvul.008G210200 Phaseolus vulgaris HOM05D004779 ORTHO05D005737 2.7e-10 68.9 74 55.4
Psat2g023720 Pisum sativum HOM05D004779 ORTHO05D005737 2.7e-10 68.9 67 56.7
Lj2g0019509 Lotus japonicus HOM05D004779 ORTHO05D005737 3.6e-10 68.6 70 48.6
arahy.Tifrunner.gnm1.ann1.GQ8P42 Arachis hypogaea HOM05D004779 ORTHO05D005737 6.1e-10 67.8 70 54.3
TPR.G13298 Trifolium pratense HOM05D004779 ORTHO05D005737 6.1e-10 67.8 70 52.9
arahy.Tifrunner.gnm1.ann1.3IJ79N Arachis hypogaea HOM05D004779 ORTHO05D005737 7.9e-10 67.4 70 54.3
Lalb_Chr04g0249841 Lupinus albus HOM05D004779 ORTHO05D005737 1.0e-09 67.0 71 52.1
FAN21G0778 Fragaria x ananassa HOM05D011291 ORTHO05D005737 1.8e-09 66.2 73 56.2
Cc01_g08160 Coffea canephora HOM05D004779 ORTHO05D005737 3.0e-09 65.5 75 50.7
Hund20969 Selenicereus undatus HOM05D004779 ORTHO05D005737 6.7e-09 64.3 79 49.4
MSTRG.21000 Avicennia marina HOM05D004779 ORTHO05D005737 8.8e-09 63.9 62 61.3
Medtr5g086790 Medicago truncatula HOM05D004779 ORTHO05D005737 8.8e-09 63.9 71 52.1
MD11G1177500 Malus domestica HOM05D004779 ORTHO05D005737 1.1e-08 63.5 78 52.6
Oeu051492.1 Olea europaea HOM05D004779 ORTHO05D005737 1.1e-08 63.5 59 62.7
RcHm_v2.0_Chr5g0049381 Rosa chinensis HOM05D004779 ORTHO05D005737 1.1e-08 63.5 73 53.4
Sc06g0008600 Simmondsia chinensis HOM05D004779 ORTHO05D005737 1.1e-08 63.5 75 50.7
VMungo0647G2327 Vigna mungo HOM05D004779 ORTHO05D005737 1.1e-08 63.5 49 69.4
Manes.11G104300 Manihot esculenta HOM05D004779 ORTHO05D005737 1.5e-08 63.2 42 73.8
CANSAT54G2495 Cannabis sativa HOM05D004779 ORTHO05D005737 1.9e-08 62.8 56 62.5
CiPaw.13G125400 Carya illinoinensis HOM05D004779 ORTHO05D005737 1.9e-08 62.8 38 81.6
FvH4_3g26940 Fragaria vesca HOM05D004779 ORTHO05D005737 1.9e-08 62.8 38 81.6
FAN11G2927 Fragaria x ananassa HOM05D004779 ORTHO05D005737 1.9e-08 62.8 38 81.6
FAN16G1882 Fragaria x ananassa HOM05D004779 ORTHO05D005737 1.9e-08 62.8 38 81.6
FAN25G2723 Fragaria x ananassa HOM05D004779 ORTHO05D005737 1.9e-08 62.8 38 81.6
CSS0005993 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 2.5e-08 62.4 59 59.3
CSS0044664 Camellia sinensis var. sinensis HOM05D004779 ORTHO05D005737 2.5e-08 62.4 59 59.3
Cfa005492 Carpinus fangiana HOM05D004779 ORTHO05D005737 3.3e-08 62.0 38 78.9
Hma1.2p1_0218F.1_g092300 Hydrangea macrophylla HOM05D004779 ORTHO05D005737 3.3e-08 62.0 70 54.3
Lalb_Chr10g0105761 Lupinus albus HOM05D004779 ORTHO05D005737 3.3e-08 62.0 70 47.1
vmacro04059 Vaccinium macrocarpon HOM05D004779 ORTHO05D005737 3.3e-08 62.0 51 60.8
COL.COLO4_25354 Corchorus olitorius HOM05D004779 ORTHO05D005737 5.7e-08 61.2 42 71.4
TAR369G0205 Trochodendron aralioides HOM05D004779 ORTHO05D005737 5.7e-08 61.2 92 41.3
MD03G1161400 Malus domestica HOM05D004779 ORTHO05D005737 7.4e-08 60.8 38 78.9
Duzib170G1005 Durio zibethinus HOM05D004779 ORTHO05D005737 9.7e-08 60.5 42 69.0
Thecc.09G267300 Theobroma cacao HOM05D004779 ORTHO05D005737 9.7e-08 60.5 42 69.0
Atru.chr3.3301 Acer truncatum HOM05D004779 ORTHO05D005737 1.3e-07 60.1 36 80.6
Actinidia12899 Actinidia chinensis HOM05D004779 ORTHO05D005737 1.3e-07 60.1 52 57.7
AUR62001587 Chenopodium quinoa HOM05D004779 ORTHO05D005737 1.3e-07 60.1 70 52.9
AUR62020193 Chenopodium quinoa HOM05D004779 ORTHO05D005737 1.3e-07 60.1 70 52.9
CsaV3_1G004540 Cucumis sativus L. HOM05D004779 ORTHO05D005737 1.3e-07 60.1 75 49.3
Duzib168G2107 Durio zibethinus HOM05D004779 ORTHO05D005737 1.3e-07 60.1 42 69.0
Prupe.6G149600 Prunus persica HOM05D004779 ORTHO05D005737 1.3e-07 60.1 36 80.6
QL01p018814 Quercus lobata HOM05D004779 ORTHO05D005737 1.3e-07 60.1 38 73.7
GSVIVG01037513001 Vitis vinifera HOM05D004779 ORTHO05D005737 1.3e-07 60.1 76 51.3
Migut.D02461 Erythranthe guttata HOM05D004779 ORTHO05D005737 2.2e-07 59.3 63 57.1
FAN22G0927 Fragaria x ananassa HOM05D004779 ORTHO05D013607 2.2e-07 59.3 34 85.3
Rhsim13G0199300 Rhododendron simsii HOM05D004779 ORTHO05D005737 2.2e-07 59.3 36 77.8
Cpa.g.sc103.54 Carica papaya HOM05D004779 ORTHO05D005737 2.8e-07 58.9 42 66.7
ClCG06G014140 Citrullus lanatus HOM05D004779 ORTHO05D005737 2.8e-07 58.9 58 58.6
Ciclev10027942m.g Citrus clementina HOM05D004779 ORTHO05D005737 2.8e-07 58.9 35 80.0
MELO3C017381.2 Cucumis melo HOM05D004779 ORTHO05D005737 2.8e-07 58.9 58 58.6
Gohir.A07G114480 Gossypium hirsutum HOM05D004779 ORTHO05D005737 2.8e-07 58.9 38 73.7
Gohir.D07G118400 Gossypium hirsutum HOM05D004779 ORTHO05D005737 2.8e-07 58.9 38 73.7
Gorai.001G127300 Gossypium raimondii HOM05D004779 ORTHO05D005737 2.8e-07 58.9 38 73.7
HanXRQChr03g0091061 Helianthus annuus HOM05D004779 ORTHO05D005737 3.7e-07 58.5 54 61.1
Potri.004G193300 Populus trichocarpa HOM05D004779 ORTHO05D005737 3.7e-07 58.5 38 73.7
PGR119G0691 Punica granatum HOM05D004779 ORTHO05D005737 4.8e-07 58.2 40 70.0
Lsat_1_v5_gn_3_114561 Lactuca sativa HOM05D004779 ORTHO05D005737 6.3e-07 57.8 67 50.7
Sed0027738 Sechium edule HOM05D004779 ORTHO05D005737 6.3e-07 57.8 38 71.1
Gohir.A13G221700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 1.1e-06 57.0 42 64.3
Gohir.D13G225700 Gossypium hirsutum HOM05D004779 ORTHO05D005737 1.1e-06 57.0 42 64.3
Gorai.013G256500 Gossypium raimondii HOM05D004779 ORTHO05D005737 1.1e-06 57.0 42 64.3
Potri.009G155400 Populus trichocarpa HOM05D004779 ORTHO05D005737 1.1e-06 57.0 40 67.5
Sabra09G0121800 Salix brachista HOM05D004779 ORTHO05D005737 1.1e-06 57.0 40 67.5
THA.LOC104799595 Tarenaya hassleriana HOM05D004779 ORTHO05D005737 1.4e-06 56.6 84 42.9
Dinv32142 Davidia involucrata HOM05D004779 ORTHO05D005737 2.4e-06 55.8 38 68.4
Nn2g14463 Nelumbo nucifera HOM05D004779 ORTHO05D005737 2.4e-06 55.8 72 50.0
SHI25305 Sapria himalayana HOM05D004779 ORTHO05D005737 2.4e-06 55.8 37 70.3
Sed0007784 Sechium edule HOM05D004779 ORTHO05D005737 2.4e-06 55.8 42 64.3
Ah.08g222510 Amaranthus hybridus HOM05D004779 ORTHO05D005737 3.1e-06 55.5 37 70.3
HanXRQChr13g0420201 Helianthus annuus HOM05D004779 ORTHO05D005737 3.1e-06 55.5 45 60.0
Sp6g23590 Schrenkiella parvula HOM05D004779 ORTHO05D005737 3.1e-06 55.5 94 37.2
DCAR_012261 Daucus carota HOM05D004779 ORTHO05D005737 5.3e-06 54.7 45 64.4
FAN02G4109 Fragaria x ananassa HOM05D004779 ORTHO05D005737 5.3e-06 54.7 70 54.3
PSO339G0772 Papaver somniferum HOM05D004779 ORTHO05D005737 5.3e-06 54.7 54 53.7
PSO384G0479 Papaver somniferum HOM05D004779 ORTHO05D005737 5.3e-06 54.7 54 53.7
Oeu026350.1 Olea europaea HOM05D004779 ORTHO05D005737 6.9e-06 54.3 60 56.7
C02p10520 Brassica napus HOM05D004779 ORTHO05D005737 9.1e-06 53.9 40 62.5
BraA02t05604Z Brassica rapa HOM05D004779 ORTHO05D005737 9.1e-06 53.9 40 62.5


User provided reference genes

Program Settings