Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 8.1e-74 280.4 152 100.0
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.4e-65 252.3 152 91.4
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.3e-63 246.5 152 88.2
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.9e-63 245.4 152 87.5
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 6.5e-63 244.2 151 86.8
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.4e-62 243.0 152 86.8
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.1e-54 216.9 156 76.9
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 3.2e-46 188.7 152 71.1
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 7.2e-46 187.6 150 69.3
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.7e-45 185.7 152 71.1
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 2.7e-45 185.7 152 70.4
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 7.9e-45 184.1 152 69.7
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 3.0e-44 182.2 152 68.4
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.0e-44 182.2 152 69.1
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 3.9e-44 181.8 152 68.4
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 6.7e-44 181.0 152 69.1
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 6.7e-44 181.0 152 67.8
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.4e-43 178.3 152 67.8
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 7.4e-43 177.6 152 63.8
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 9.7e-43 177.2 152 65.8
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 9.7e-43 177.2 152 67.8
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 1.3e-42 176.8 152 67.1
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.3e-42 176.8 152 67.1
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.7e-42 176.4 152 68.4
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 2.2e-42 176.0 152 65.8
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 4.8e-42 174.9 152 65.1
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.3e-42 174.5 152 65.8
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 6.3e-42 174.5 133 72.9
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 8.2e-42 174.1 152 65.1
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 8.2e-42 174.1 152 66.4
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.4e-41 173.3 152 64.5
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.4e-41 172.6 152 65.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.4e-41 172.6 152 65.1
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.4e-41 172.6 152 65.1
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 4.1e-41 171.8 152 64.5
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 7.0e-41 171.0 151 64.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 9.1e-41 170.6 153 64.7
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.2e-40 170.2 152 63.8
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.6e-40 169.9 152 64.5
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 2.6e-40 169.1 152 67.1
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 2.6e-40 169.1 152 65.1
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.5e-40 168.7 143 65.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.5e-40 168.7 144 64.6
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 4.5e-40 168.3 152 63.8
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 5.9e-40 167.9 152 62.5
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 7.7e-40 167.5 152 64.5
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 1.0e-39 167.2 152 63.8
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 1.3e-39 166.8 142 66.2
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.2e-39 166.0 142 66.2
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.2e-39 166.0 152 65.1
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 2.9e-39 165.6 143 64.3
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 6.5e-39 164.5 146 63.7
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 8.5e-39 164.1 152 62.5
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.1e-38 163.7 152 65.1
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.9e-38 162.9 152 61.2
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 2.5e-38 162.5 152 62.5
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 4.2e-38 161.8 138 64.5
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 9.4e-38 160.6 152 61.8
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.7e-37 158.3 141 60.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 4.7e-37 158.3 142 62.7
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.7e-37 158.3 152 63.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.8e-36 156.4 145 64.1
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.7e-35 151.4 152 56.6
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.7e-34 149.8 138 60.9
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-34 149.4 122 65.6
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.4e-33 146.7 152 59.2
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.4e-33 146.0 138 60.9
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 3.1e-33 145.6 120 65.0
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.0e-32 142.9 128 65.6
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-32 142.9 128 64.8
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-31 139.8 122 66.4
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-31 139.8 122 66.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.2e-31 139.4 153 54.9
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.2e-31 139.4 153 54.9
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.9e-31 139.0 152 51.3
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 6.5e-31 137.9 152 57.9
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-30 137.1 153 54.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.1e-30 137.1 152 59.9
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.5e-30 136.7 152 55.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.5e-30 136.7 121 62.8
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.9e-30 136.3 119 60.5
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.5e-30 136.0 152 55.9
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.2e-30 135.6 131 58.8
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 3.2e-30 135.6 152 57.9
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 5.5e-30 134.8 112 67.0
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.5e-30 134.8 115 63.5
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 5.5e-30 134.8 152 57.2
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 7.2e-30 134.4 152 53.3
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 9.4e-30 134.0 152 55.3
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 2.1e-29 132.9 152 53.9
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.6e-29 132.1 152 52.6
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 3.6e-29 132.1 152 52.6
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 6.1e-29 131.3 118 63.6
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 8.0e-29 131.0 120 60.8
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 1.4e-28 130.2 152 52.0
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 4.0e-28 128.6 152 53.3
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 6.8e-28 127.9 153 54.9
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.3
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.3
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.3
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.3
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.3
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 8.8e-28 127.5 152 53.3
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 1.2e-27 127.1 152 53.9
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 2.6e-27 125.9 152 53.3
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 4.4e-27 125.2 153 55.6
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.7e-27 124.8 152 52.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 7.5e-27 124.4 152 52.6
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 9.8e-27 124.0 112 62.5
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.3e-26 123.6 126 56.3
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.3e-26 123.6 152 52.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 2.2e-26 122.9 113 61.9
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.4e-25 120.2 145 49.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 9.1e-25 117.5 152 51.3
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 6.1e-21 104.8 62 87.1
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 2.3e-20 102.8 152 40.8
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 7.5e-19 97.8 122 52.5
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.4e-17 93.6 80 63.8
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 1.4e-17 93.6 93 60.2
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 7.0e-17 91.3 96 58.3
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.7e-16 89.4 91 56.0
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 1.0e-15 87.4 89 53.9
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 3.8e-15 85.5 78 65.4
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 7.3e-14 81.3 77 61.0
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.8e-12 76.6 104 46.2
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.0e-12 75.5 104 44.2
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 6.8e-12 74.7 59 64.4
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 8.3e-10 67.8 93 50.5
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.9e-08 61.6 95 41.1
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.9e-08 61.6 101 45.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 5.9e-08 61.6 101 45.5
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 5.6e-06 55.1 67 47.8


User provided reference genes

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