Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.5e-101 372.9 194 100.0
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 2.6e-77 292.4 269 62.8
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 5.2e-73 278.1 187 79.7
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.5e-72 276.6 150 94.0
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.5e-72 276.6 150 94.0
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 7.5e-72 274.2 150 93.3
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.7e-71 271.9 215 70.2
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 6.3e-71 271.2 150 92.7
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 6.3e-71 271.2 150 92.7
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 8.2e-71 270.8 150 92.7
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 1.4e-70 270.0 150 92.0
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.0e-65 253.8 150 86.7
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.4e-65 253.4 256 60.2
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 9.8e-64 247.3 178 75.3
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 1.3e-63 246.9 148 83.8
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 1.3e-63 246.9 148 83.8
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 4.8e-63 245.0 146 84.2
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 4.8e-63 245.0 146 84.2
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 8.3e-63 244.2 138 89.9
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.4e-62 242.7 178 74.7
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 2.4e-62 242.7 146 83.6
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 5.9e-61 238.0 150 82.7
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 5.9e-61 238.0 150 82.7
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 2.2e-60 236.1 143 83.9
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.9e-59 233.0 133 90.2
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 2.5e-59 232.6 150 80.7
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 4.2e-59 231.9 176 72.2
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 4.2e-59 231.9 176 72.2
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 9.4e-59 230.7 223 60.5
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 1.2e-58 230.3 152 78.9
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 2.1e-58 229.6 147 80.3
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.6e-58 228.8 214 62.1
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 3.6e-58 228.8 214 62.1
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 4.7e-58 228.4 140 82.9
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 8.0e-58 227.6 149 77.9
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.0e-57 227.3 140 82.1
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.0e-57 227.3 140 82.1
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.0e-57 227.3 140 82.9
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.0e-57 227.3 140 82.9
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.0e-57 227.3 140 82.9
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.4e-57 226.9 146 80.1
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.3e-57 226.1 149 77.2
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 5.2e-57 224.9 150 80.0
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 6.8e-57 224.6 140 82.1
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.2e-56 223.8 140 82.1
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 2.0e-56 223.0 148 78.4
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 4.4e-56 221.9 140 80.7
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.3e-55 220.3 146 78.8
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.8e-55 219.2 150 78.7
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.8e-55 219.2 150 78.7
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 4.9e-55 218.4 132 81.8
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 4.9e-55 218.4 132 81.8
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 5.4e-54 214.9 140 80.7
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.2e-53 213.8 140 80.0
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.2e-53 213.8 140 80.0
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 3.5e-53 212.2 138 79.7
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 5.9e-53 211.5 134 80.6
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 5.9e-53 211.5 134 80.6
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 5.9e-53 211.5 134 80.6
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 5.9e-53 211.5 133 80.5
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.0e-52 210.7 140 79.3
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.3e-52 209.5 187 63.6
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 3.3e-51 205.7 134 77.6
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.0e-49 198.7 154 70.1
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 1.2e-48 197.2 148 70.9
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 2.0e-48 196.4 113 85.8
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 9.8e-48 194.1 119 82.4
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 2.2e-47 193.0 117 82.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 4.9e-47 191.8 116 83.6
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 4.9e-47 191.8 116 83.6
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 1.8e-46 189.9 129 76.0
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 3.2e-46 189.1 109 85.3
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.7e-45 186.0 103 88.3
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 7.8e-45 184.5 117 79.5
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.1e-43 180.6 108 84.3
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 4.3e-43 178.7 121 76.9
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 7.3e-43 177.9 118 77.1
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 2.4e-38 162.9 99 82.8
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 2.7e-37 159.5 143 62.2
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.9e-31 138.7 79 89.9
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-30 137.5 75 90.7
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 2.1e-26 123.2 159 50.3
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 3.8e-23 112.5 75 76.0
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 3.8e-23 112.5 75 76.0
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 1.1e-22 110.9 81 74.1
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 2.1e-21 106.7 64 84.4
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 4.6e-21 105.5 87 64.4
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 1.3e-20 104.0 66 78.8
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.9e-20 102.4 58 84.5
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 8.6e-20 101.3 76 71.1
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.5e-19 100.5 83 69.9
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 1.2e-18 97.4 73 69.9
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.6e-18 97.1 60 85.0
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 2.4e-17 93.2 62 74.2
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 3.1e-17 92.8 172 40.7
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 4.0e-17 92.4 68 69.1
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 1.7e-15 87.0 50 82.0
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 6.4e-15 85.1 47 87.2
Nitab4.5_0012599g0060 Nicotiana tabacum HOM05D008204 ORTHO05D010378 5.4e-14 82.0 63 69.8
Aqoxy12s023 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.2e-13 80.9 54 79.6
Aqoxy1G02968 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.2e-13 80.9 54 79.6
Aqoxy23s009 Aquilegia oxysepala HOM05D008204 ORTHO05D010378 1.2e-13 80.9 54 79.6
CDE02G0407 Ceratophyllum demersum HOM05D008466 ORTHO05D010817 1.2e-13 80.9 54 79.6
Dinv06665 Davidia involucrata HOM05D008204 ORTHO05D010378 1.2e-13 80.9 54 79.6
CAN.G2446.2 Capsicum annuum HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
CAN.G2792.2 Capsicum annuum HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
DCAR_032454 Daucus carota HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
HanXRQChr16g0504421 Helianthus annuus HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
HanXRQMTg0579141 Helianthus annuus HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
Lsat_1_v5_gn_0_35040 Lactuca sativa HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
Lsat_1_v5_gn_5_43061 Lactuca sativa HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
Nn1g09977 Nelumbo nucifera HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
Nn1g10041 Nelumbo nucifera HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
Nitab4.5_0010333g0030 Nicotiana tabacum HOM05D008204 ORTHO05D010378 1.6e-13 80.5 63 68.3
RcHm_v2.0_MTg0498341 Rosa chinensis HOM05D008204 ORTHO05D010378 1.6e-13 80.5 54 79.6
SHI54418 Sapria himalayana HOM05D008204 ORTHO05D010378 2.1e-13 80.1 63 71.4
SHI51809 Sapria himalayana HOM05D008204 ORTHO05D010378 3.5e-13 79.3 45 91.1
ATMG00650 Arabidopsis thaliana HOM05D008204 ORTHO05D010378 7.8e-13 78.2 54 77.8
BraSC48t46233Z Brassica rapa HOM05D008204 ORTHO05D010378 7.8e-13 78.2 54 77.8
BraSC48t46321Z Brassica rapa HOM05D008204 ORTHO05D010378 7.8e-13 78.2 54 77.8
CARHR283010 Cardamine hirsuta HOM05D008204 ORTHO05D010378 7.8e-13 78.2 54 77.8
Thhalv10023053m.g Eutrema salsugineum HOM05D008204 ORTHO05D010378 7.8e-13 78.2 54 77.8
Gorai.001G160700 Gossypium raimondii HOM05D008204 ORTHO05D010378 7.8e-13 78.2 54 77.8
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 7.8e-13 78.2 48 81.2
arahy.Tifrunner.gnm1.ann1.13YUNC Arachis hypogaea HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
arahy.Tifrunner.gnm1.ann1.4CE1ET Arachis hypogaea HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
arahy.Tifrunner.gnm1.ann1.CN6S56 Arachis hypogaea HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
arahy.Tifrunner.gnm1.ann1.TNUC9A Arachis hypogaea HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
HanXRQChr07g0189011 Helianthus annuus HOM05D008204 ORTHO05D010378 1.3e-12 77.4 44 90.9
LjContig00439g0017375 Lotus japonicus HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
Lalb_Chr00c21g0405851 Lupinus albus HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
Lalb_Chr00c24g0407001 Lupinus albus HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
TPR.G39971 Trifolium pratense HOM05D008204 ORTHO05D010378 1.3e-12 77.4 54 77.8
Glyma.17G186100 Glycine max HOM05D008204 ORTHO05D010378 1.7e-12 77.0 54 77.8
HanXRQChr11g0327851 Helianthus annuus HOM05D008204 ORTHO05D010378 2.3e-12 76.6 44 90.9
C01p34800 Brassica napus HOM05D008204 ORTHO05D010378 3.0e-12 76.3 54 75.9
BolC1t03448H Brassica oleracea HOM05D008204 ORTHO05D010378 3.0e-12 76.3 54 75.9
HanXRQChr07g0188981 Helianthus annuus HOM05D008204 ORTHO05D010378 3.0e-12 76.3 54 77.8
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 1.1e-11 74.3 80 58.8
Ah.10g028140 Amaranthus hybridus HOM05D008204 ORTHO05D010378 1.6e-10 70.5 54 72.2
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 2.1e-10 70.1 37 89.2
Potri.007G061661 Populus trichocarpa HOM05D008204 ORTHO05D010378 4.8e-10 68.9 54 70.4
Potri.007G062622 Populus trichocarpa HOM05D008204 ORTHO05D010378 4.8e-10 68.9 54 70.4
Aa31csc1168G40 Aethionema arabicum HOM05D008204 ORTHO05D010378 6.2e-10 68.6 49 75.5
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 1.4e-09 67.4 39 84.6
SHI41393 Sapria himalayana HOM05D008204 ORTHO05D010378 1.8e-09 67.0 49 75.5
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.2e-08 64.3 39 82.1
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.4e-08 62.8 31 93.5
CANSAT16G0035 Cannabis sativa HOM05D008204 ORTHO05D010378 5.8e-08 62.0 54 66.7
Sed0011989 Sechium edule HOM05D008204 ORTHO05D010378 5.8e-08 62.0 54 66.7
Sed0024014 Sechium edule HOM05D008204 ORTHO05D010378 5.8e-08 62.0 54 66.7
SHI07475 Sapria himalayana HOM05D008204 ORTHO05D010378 2.9e-07 59.7 41 78.0
Nitab4.5_0001152g0280 Nicotiana tabacum HOM05D008204 ORTHO05D016167 3.2e-06 56.2 45 66.7
SEGI_24171 Sequoiadendron giganteum HOM05D008204 ORTHO05D010378 9.3e-06 54.7 44 72.7


User provided reference genes

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