Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010023g0010 Nicotiana tabacum HOM05D003443 ORTHO05D009887 2.2e-296 1021.5 508 100.0
Nitab4.5_0002816g0090 Nicotiana tabacum HOM05D003443 ORTHO05D009887 1.2e-217 760.0 509 79.0
Solyc03g093210.3 Solanum lycopersicum HOM05D003443 ORTHO05D009887 2.5e-188 662.5 506 69.8
CAN.G48.26 Capsicum annuum HOM05D003443 ORTHO05D009887 1.1e-186 657.1 506 67.2
PGSC0003DMG400014817 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.3e-184 650.2 507 68.4
Peaxi162Scf00241g00037 Petunia axillaris HOM05D003443 ORTHO05D009887 5.2e-149 531.9 511 58.9
Sopen03g024010 Solanum pennellii HOM05D003443 ORTHO05D009887 2.3e-120 436.8 380 63.7
GSVIVG01008903001 Vitis vinifera HOM05D003443 ORTHO05D009887 1.5e-108 397.5 509 45.0
RhsimUnG0094800 Rhododendron simsii HOM05D003443 ORTHO05D009887 8.4e-107 391.7 536 43.1
Cfa015987 Carpinus fangiana HOM05D003443 ORTHO05D009887 1.2e-105 387.9 494 44.5
Prupe.1G501800 Prunus persica HOM05D003443 ORTHO05D009887 1.9e-103 380.6 515 43.3
QL09p035320 Quercus lobata HOM05D003443 ORTHO05D009887 1.3e-102 377.9 510 42.2
TWI56G0082 Tripterygium wilfordii HOM05D003443 ORTHO05D009887 2.1e-102 377.1 503 44.1
TAR628G0851 Trochodendron aralioides HOM05D003443 ORTHO05D009887 2.1e-102 377.1 511 42.7
Thecc.08G121100 Theobroma cacao HOM05D003443 ORTHO05D009887 2.4e-101 373.6 503 43.1
Atru.chr13.1406 Acer truncatum HOM05D003443 ORTHO05D009887 4.0e-101 372.9 502 43.4
MD08G1168100 Malus domestica HOM05D003443 ORTHO05D009887 2.6e-100 370.2 509 43.0
Gohir.A05G233300 Gossypium hirsutum HOM05D003443 ORTHO05D009887 8.4e-99 365.2 502 42.0
Manes.02G161000 Manihot esculenta HOM05D003443 ORTHO05D009887 2.4e-98 363.6 496 41.1
CANSAT25G3703 Cannabis sativa HOM05D003443 ORTHO05D009887 7.1e-98 362.1 500 42.0
FvH4_2g26511 Fragaria vesca HOM05D003443 ORTHO05D009887 7.1e-98 362.1 505 42.0
FAN15G1193 Fragaria x ananassa HOM05D002169 ORTHO05D006927 9.3e-98 361.7 502 41.6
Gorai.009G244000 Gossypium raimondii HOM05D003443 ORTHO05D009887 7.9e-97 358.6 502 41.8
RcHm_v2.0_Chr6g0295331 Rosa chinensis HOM05D003443 ORTHO05D009887 8.7e-96 355.1 506 41.9
MSTRG.1462 Avicennia marina HOM05D003443 ORTHO05D009887 1.1e-95 354.8 506 41.1
Migut.C01151 Erythranthe guttata HOM05D003443 ORTHO05D009887 7.4e-95 352.1 505 40.4
Sed0010337 Sechium edule HOM05D003443 ORTHO05D009887 6.2e-94 349.0 514 39.5
DCAR_003542 Daucus carota HOM05D003443 ORTHO05D009887 1.4e-93 347.8 504 40.5
SalBow7G0745 Salvia bowleyana HOM05D003443 ORTHO05D009887 4.0e-93 346.3 510 40.8
Eucgr.F03767 Eucalyptus grandis HOM05D003443 ORTHO05D009887 5.3e-93 345.9 503 41.4
Sabra05G0132100 Salix brachista HOM05D003443 ORTHO05D009887 5.3e-93 345.9 511 39.5
Nn5g28161 Nelumbo nucifera HOM05D003443 ORTHO05D009887 3.4e-92 343.2 511 40.7
QL09p036517 Quercus lobata HOM05D003443 ORTHO05D009887 7.6e-92 342.0 481 41.0
Lsat_1_v5_gn_1_8320 Lactuca sativa HOM05D003443 ORTHO05D009887 6.5e-91 339.0 509 39.5
SalBow7G1610 Salvia bowleyana HOM05D003443 ORTHO05D009887 1.1e-90 338.2 510 40.4
Hund16841 Selenicereus undatus HOM05D003443 ORTHO05D009887 1.9e-90 337.4 511 41.5
CsaV3_4G028430 Cucumis sativus L. HOM05D003443 ORTHO05D009887 1.2e-89 334.7 505 39.6
ClCG11G015590 Citrullus lanatus HOM05D003443 ORTHO05D009887 2.1e-89 334.0 509 39.3
arahy.Tifrunner.gnm1.ann1.5F0RSX Arachis hypogaea HOM05D003443 ORTHO05D009887 1.3e-88 331.3 505 39.2
HanXRQChr04g0111631 Helianthus annuus HOM05D003443 ORTHO05D009887 3.3e-87 326.6 503 40.0
arahy.Tifrunner.gnm1.ann1.JR3K98 Arachis hypogaea HOM05D003443 ORTHO05D009887 4.3e-87 326.2 505 38.8
MELO3C010459.2 Cucumis melo HOM05D003443 ORTHO05D009887 4.3e-87 326.2 508 40.2
VMungo0647G1328 Vigna mungo HOM05D003443 ORTHO05D009887 4.3e-87 326.2 502 37.6
Lj7C333G3 Lonicera japonica HOM05D003443 ORTHO05D009887 2.0e-84 317.4 444 43.9
Psat2g078480 Pisum sativum HOM05D003443 ORTHO05D009887 1.0e-83 315.1 502 37.3
Phvul.008G165600 Phaseolus vulgaris HOM05D003443 ORTHO05D009887 6.5e-83 312.4 502 36.3
Ca_03725_v3 Cicer arietinum L. HOM05D003443 ORTHO05D009887 1.4e-82 311.2 501 36.5
Medtr5g059070 Medicago truncatula HOM05D003443 ORTHO05D009887 1.4e-82 311.2 500 36.6
FAN27G2831 Fragaria x ananassa HOM05D003443 ORTHO05D009887 9.3e-82 308.5 470 38.9
Lalb_Chr10g0101921 Lupinus albus HOM05D003443 ORTHO05D009887 2.1e-81 307.4 501 36.3
Lj1g0008620 Lotus japonicus HOM05D003443 ORTHO05D009887 6.1e-81 305.8 500 36.8
SGA_v2.0_scaffold52G18985 Striga asiatica HOM05D003443 ORTHO05D009887 7.4e-79 298.9 506 37.4
vmacro00815 Vaccinium macrocarpon HOM05D003443 ORTHO05D009887 1.8e-77 294.3 503 40.2
ECA247G0446 Erigeron canadensis HOM05D003443 ORTHO05D009887 6.9e-77 292.4 470 37.9
Actinidia25684 Actinidia chinensis HOM05D003443 ORTHO05D009887 4.5e-76 289.7 305 49.8
Duzib093G0763 Durio zibethinus HOM05D003443 ORTHO05D009887 2.7e-73 280.4 430 39.5
TPR.G8502 Trifolium pratense HOM05D003443 ORTHO05D009887 7.4e-71 272.3 468 35.7
Haze_00482 Corylus avellana HOM05D003443 ORTHO05D009887 2.2e-70 270.8 506 35.0
Oeu050896.1 Olea europaea HOM05D003443 ORTHO05D009887 2.8e-70 270.4 538 37.2
Sc01g0001370 Simmondsia chinensis HOM05D003443 ORTHO05D009887 6.9e-69 265.8 456 35.3
Glyma.14G162900 Glycine max HOM05D003443 ORTHO05D009887 9.1e-69 265.4 447 34.9
EL10Ac1g00011 Beta vulgaris HOM05D003443 ORTHO05D009887 2.6e-68 263.8 501 34.9
AUR62004719 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.9e-66 257.7 463 35.2
AUR62023638 Chenopodium quinoa HOM05D003443 ORTHO05D009887 1.4e-61 241.5 450 34.0
MBI06_g02575_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 1.9e-58 231.1 501 35.3
Cc10_g11010 Coffea canephora HOM05D003443 ORTHO05D009887 3.6e-57 226.9 342 40.6
Aqoxy5G02443 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 1.1e-55 221.9 254 46.5
Medtr5g459020 Medicago truncatula HOM05D003443 ORTHO05D009887 8.2e-54 215.7 418 32.1
Potri.005G174900 Populus trichocarpa HOM05D003443 ORTHO05D009887 1.8e-53 214.5 497 30.8
ATR0684G011 Amborella trichopoda HOM05D003443 ORTHO05D009887 9.8e-47 192.2 260 39.2
Cc10_g11020 Coffea canephora HOM05D003443 ORTHO05D009887 8.3e-46 189.1 165 57.6
MBI06_g35594_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 6.5e-43 179.5 194 50.0
Actinidia29454 Actinidia chinensis HOM05D003443 ORTHO05D009887 6.6e-35 152.9 289 35.6
Gohir.D05G235701 Gossypium hirsutum HOM05D003443 ORTHO05D009887 1.2e-33 148.7 283 35.0
PGSC0003DMG400021471 Solanum tuberosum HOM05D003443 ORTHO05D009887 1.6e-33 148.3 93 78.5
Lj7E334T0 Lonicera japonica HOM05D003443 ORTHO05D009887 1.6e-25 121.7 87 70.1
MBI06_g44274_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.6e-25 120.6 393 29.3
Os04g0450500 Oryza sativa ssp. japonica HOM05D003443 ORTHO05D009887 9.2e-21 105.9 334 25.4
Aqoxy5G02442 Aquilegia oxysepala HOM05D003443 ORTHO05D009887 3.5e-20 104.0 153 43.8
MBI06_g35595_MAGBIO Magnolia biondii HOM05D003443 ORTHO05D009887 3.9e-19 100.5 135 45.2
COL.COLO4_12190 Corchorus olitorius HOM05D003443 ORTHO05D009887 1.6e-17 95.1 77 55.8
Migut.K01194 Erythranthe guttata HOM05D003443 ORTHO05D009887 9.5e-10 69.3 48 64.6
Zm00001eb081310 Zea mays HOM05D003443 ORTHO05D009887 1.2e-07 62.4 120 29.2
Lsat_1_v5_gn_1_21640 Lactuca sativa HOM05D001068 ORTHO05D002190 2.9e-06 57.8 43 58.1
Hma1.2p1_0248F.1_g102080 Hydrangea macrophylla HOM05D003443 ORTHO05D009887 4.9e-06 57.0 37 75.7


User provided reference genes

Program Settings