Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.7e-61 238.0 122 100.0
Nitab4.5_0001134g0060 Nicotiana tabacum HOM05D007156 ORTHO05D003871 3.3e-33 145.2 117 73.5
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 4.3e-33 144.8 132 68.9
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.1e-27 125.9 130 64.6
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 6.6e-26 120.9 119 61.3
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.5e-25 119.8 132 59.1
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 3.3e-25 118.6 128 59.4
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 3.9e-18 95.1 85 67.1
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.9e-17 92.8 115 48.7
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 3.3e-17 92.0 115 52.2
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 1.3e-16 90.1 113 53.1
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 3.6e-16 88.6 126 49.2
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 6.2e-16 87.8 133 44.4
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 1.1e-15 87.0 75 73.3
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 1.2e-14 83.6 124 45.2
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.5e-14 83.2 126 50.8
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 2.0e-14 82.8 109 46.8
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.6e-14 82.4 118 50.0
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 4.5e-14 81.6 107 46.7
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 9.9e-14 80.5 122 48.4
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 9.9e-14 80.5 123 43.1
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 9.9e-14 80.5 117 50.4
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.3e-13 80.1 114 48.2
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.3e-13 80.1 114 48.2
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 1.7e-13 79.7 66 62.1
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 2.2e-13 79.3 111 51.4
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.9e-13 79.0 114 47.4
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 2.9e-13 79.0 117 46.2
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 4.9e-13 78.2 53 73.6
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 8.4e-13 77.4 112 45.5
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 1.1e-12 77.0 114 46.5
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 1.1e-12 77.0 114 46.5
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.1e-12 77.0 73 63.0
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.4e-12 76.6 123 45.5
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 1.9e-12 76.3 83 55.4
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.9e-12 76.3 71 63.4
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.9e-12 76.3 121 46.3
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 1.9e-12 76.3 68 67.6
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.9e-12 76.3 117 43.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.4e-12 75.9 93 52.7
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 2.4e-12 75.9 66 68.2
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 4.2e-12 75.1 64 68.8
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 4.2e-12 75.1 122 44.3
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 5.4e-12 74.7 69 66.7
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 7.1e-12 74.3 77 57.1
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 9.3e-12 73.9 48 75.0
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 9.3e-12 73.9 60 66.7
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.2e-11 73.6 72 62.5
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.2e-11 73.6 72 62.5
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 1.2e-11 73.6 121 43.8
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 1.6e-11 73.2 117 48.7
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 2.1e-11 72.8 66 65.2
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 3.5e-11 72.0 49 75.5
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 4.6e-11 71.6 88 51.1
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 4.6e-11 71.6 131 41.2
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 6.0e-11 71.2 74 56.8
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 1.0e-10 70.5 83 57.8
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 1.0e-10 70.5 66 68.2
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.0e-10 70.5 77 53.2
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.3e-10 70.1 67 55.2
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 1.3e-10 70.1 62 62.9
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 2.3e-10 69.3 65 61.5
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 5.1e-10 68.2 54 64.8
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 5.1e-10 68.2 120 41.7
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 8.7e-10 67.4 71 59.2
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 8.7e-10 67.4 81 44.4
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 1.5e-09 66.6 51 68.6
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 2.5e-09 65.9 75 53.3
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 3.3e-09 65.5 84 42.9
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 3.3e-09 65.5 36 83.3
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 3.3e-09 65.5 59 61.0
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 4.3e-09 65.1 116 40.5
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 5.6e-09 64.7 72 52.8
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 5.6e-09 64.7 54 61.1
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 5.6e-09 64.7 120 39.2
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 5.6e-09 64.7 54 63.0
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 7.4e-09 64.3 82 41.5
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 9.6e-09 63.9 85 42.4
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.3e-08 63.5 118 39.8
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.3e-08 63.5 112 36.6
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 1.3e-08 63.5 85 41.2
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 1.3e-08 63.5 51 58.8
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.1e-08 62.8 123 41.5
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 2.8e-08 62.4 84 41.7
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 2.8e-08 62.4 77 46.8
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.8e-08 62.4 125 32.0
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 2.8e-08 62.4 131 36.6
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 3.7e-08 62.0 85 40.0
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 3.7e-08 62.0 127 33.9
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 4.8e-08 61.6 71 50.7
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 4.8e-08 61.6 70 48.6
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 6.2e-08 61.2 85 40.0
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 6.2e-08 61.2 127 33.9
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 6.2e-08 61.2 123 40.7
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 6.2e-08 61.2 64 45.3
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 1.1e-07 60.5 78 44.9
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 1.1e-07 60.5 124 41.1
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 1.1e-07 60.5 113 42.5
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 1.8e-07 59.7 53 58.5
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 2.4e-07 59.3 84 38.1
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 2.4e-07 59.3 84 38.1
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 3.1e-07 58.9 66 45.5
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.1e-07 58.9 87 40.2
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 4.0e-07 58.5 115 37.4
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 4.0e-07 58.5 72 45.8
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 5.3e-07 58.2 111 42.3
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 5.3e-07 58.2 65 55.4
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 6.9e-07 57.8 78 44.9
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 6.9e-07 57.8 125 32.0
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 9.0e-07 57.4 129 28.7
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 9.0e-07 57.4 70 40.0
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 9.0e-07 57.4 53 54.7
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.2e-06 57.0 77 44.2
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 1.2e-06 57.0 118 30.5
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.2e-06 57.0 118 30.5
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 1.5e-06 56.6 51 52.9
Potri.004G029700 Populus trichocarpa HOM05D012748 ORTHO05D014783 1.5e-06 56.6 79 43.0
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.0e-06 56.2 116 31.0
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.0e-06 56.2 44 52.3
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 2.0e-06 56.2 45 51.1
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 2.0e-06 56.2 71 40.8
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.6e-06 55.8 116 30.2
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 2.6e-06 55.8 86 37.2
Thecc.05G029400 Theobroma cacao HOM05D007866 ORTHO05D003871 2.6e-06 55.8 99 37.4
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 3.4e-06 55.5 44 54.5
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 3.4e-06 55.5 53 47.2
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 3.4e-06 55.5 58 46.6
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.5e-06 55.1 35 68.6
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 4.5e-06 55.1 61 44.3
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 5.8e-06 54.7 41 58.5
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 5.8e-06 54.7 40 57.5
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 5.8e-06 54.7 40 57.5
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 5.8e-06 54.7 61 45.9
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 5.8e-06 54.7 61 45.9
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 7.6e-06 54.3 111 34.2
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 7.6e-06 54.3 93 36.6
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 1.0e-05 53.9 41 58.5


User provided reference genes

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